Publications by authors named "Matthew D Whiteside"

22Publications

Rapid nitrogen loss from ectomycorrhizal pine germinants signaled by their fungal symbiont.

Mycorrhiza 2020 Jul 3;30(4):407-417. Epub 2020 May 3.

Biology Department and Okanagan Institute of Biodiversity Resilience and Ecosystem Services, University of British Columbia, Okanagan campus, Kelowna, British Columbia, V1V 1V7, Canada.

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http://dx.doi.org/10.1007/s00572-020-00959-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7314718PMC
July 2020

Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses.

Database (Oxford) 2018 01 1;2018:1-10. Epub 2018 Jan 1.

National Microbiology Laboratory at Lethbridge, Public Health Agency of Canada, Lethbridge, Canada.

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http://dx.doi.org/10.1093/database/bay086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6146121PMC
January 2018

Phylotyper: in silico predictor of gene subtypes.

Bioinformatics 2017 Nov;33(22):3638-3641

National Microbiology Laboratory, Public Health Agency of Canada, Lethbridge, AB T1J 3Z4, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btx459DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870578PMC
November 2017

Signals and cues in the evolution of plant-microbe communication.

Curr Opin Plant Biol 2016 08 24;32:47-52. Epub 2016 Jun 24.

Institute of Ecological Science, Vrije Universiteit, 1081 HV Amsterdam, Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2016.06.006DOI Listing
August 2016

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli.

BMC Microbiol 2016 Apr 12;16:65. Epub 2016 Apr 12.

National Microbiology Laboratory @ Lethbridge, Public Health Agency of Canada, Lethbridge, AB, T1J 3Z4, Canada.

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http://dx.doi.org/10.1186/s12866-016-0680-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828761PMC
April 2016

Development and use of a quantum dot probe to track multiple yeast strains in mixed culture.

Sci Rep 2014 Nov 10;4:6971. Epub 2014 Nov 10.

Biology Department, The University of British Columbia Okanagan, 3333 University Way, Kelowna, BC V1V 1V7, Canada.

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http://dx.doi.org/10.1038/srep06971DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4225547PMC
November 2014

Novel symbiotic protoplasts formed by endophytic fungi explain their hidden existence, lifestyle switching, and diversity within the plant kingdom.

PLoS One 2014 28;9(4):e95266. Epub 2014 Apr 28.

Department of Biology and Institute for Species at Risk and Habitat Studies, University of British Columbia Okanagan, Kelowna, BC, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0095266PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4002429PMC
June 2015

Organic nitrogen uptake by arbuscular mycorrhizal fungi in a boreal forest.

Soil Biol Biochem 2012 Dec;55

Department of Ecology and Evolutionary Biology, University of California, 321 Steinhaus, Irvine, CA 92697-2525, USA.

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http://dx.doi.org/10.1016/j.soilbio.2012.06.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871874PMC
December 2012

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D366-76. Epub 2012 Nov 29.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gks1241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531125PMC
January 2013

Amino acid uptake in arbuscular mycorrhizal plants.

PLoS One 2012 17;7(10):e47643. Epub 2012 Oct 17.

Biology Department and Institute for Species at Risk and Habitat Studies, University of British Columbia Okanagan, Kelowna, British Columbia, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0047643PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3475604PMC
April 2013

Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.

Nucleic Acids Res 2011 Jan 6;39(Database issue):D596-600. Epub 2010 Oct 6.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq869DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013766PMC
January 2011

Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system.

PLoS Genet 2010 Mar 12;6(3):e1000875. Epub 2010 Mar 12.

Michael G. DeGroote Institute for Infectious Disease Research and the Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada.

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http://dx.plos.org/10.1371/journal.pgen.1000875
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http://dx.doi.org/10.1371/journal.pgen.1000875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2837388PMC
March 2010

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

The brighter side of soils: quantum dots track organic nitrogen through fungi and plants.

Ecology 2009 Jan;90(1):100-8

Department of Ecology and Evolutionary Biology, University of California, Irvine, California 92697, USA.

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http://dx.doi.org/10.1890/07-2115.1DOI Listing
January 2009

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.

Nucleic Acids Res 2009 Jan 31;37(Database issue):D483-8. Epub 2008 Oct 31.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.

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http://dx.doi.org/10.1093/nar/gkn861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686508PMC
January 2009

The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.

Bioinformatics 2008 Dec 7;24(23):2803-4. Epub 2008 Oct 7.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.

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http://dx.doi.org/10.1093/bioinformatics/btn524DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639269PMC
December 2008