Publications by authors named "Matthew D Schultz"

17Publications

Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation.

Plant J 2017 Feb 11;89(4):805-824. Epub 2017 Feb 11.

Department of Animal, Plant and Soil Science, ARC Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Melbourne, Vic, 3086, Australia.

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http://dx.doi.org/10.1111/tpj.13418DOI Listing
February 2017

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.

Elife 2015 Jul 21;4. Epub 2015 Jul 21.

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, Australia.

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http://dx.doi.org/10.7554/eLife.09343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4534844PMC
July 2015

Human body epigenome maps reveal noncanonical DNA methylation variation.

Nature 2015 Jul 1;523(7559):212-6. Epub 2015 Jun 1.

1] Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA [2] Howard Hughes Medical Institute, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1038/nature14465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499021PMC
July 2015

Integrative analysis of 111 reference human epigenomes.

Nature 2015 Feb;518(7539):317-30

1] Computer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology, 32 Vassar St, Cambridge, Massachusetts 02139, USA. [2] The Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature14248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4530010PMC
February 2015

The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.

Cell Stem Cell 2014 Sep;15(3):295-309

Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Skolkovo Institute of Science and Technology (Skoltech), Novaya strazha 100, Skolkovo Moscow Region 143025, Russia. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2014.07.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4170792PMC
September 2014

Abnormalities in human pluripotent cells due to reprogramming mechanisms.

Nature 2014 Jul 2;511(7508):177-83. Epub 2014 Jul 2.

1] Center for Embryonic Cell and Gene Therapy, Oregon Health & Science University, 3303 Southwest Bond Avenue, Portland, Oregon 97239, USA [2] Division of Reproductive and Developmental Sciences, Oregon National Primate Research Center, Oregon Health & Science University, 505 Northwest 185th Avenue, Beaverton, Oregon 97006, USA [3] Division of Reproductive Endocrinology, Department of Obstetrics and Gynecology, Oregon Health & Science University, 3181 Southwest Sam Jackson Park Road, Portland, Oregon 97239, USA.

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http://dx.doi.org/10.1038/nature13551DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898064PMC
July 2014

Patterns of population epigenomic diversity.

Nature 2013 Mar 6;495(7440):193-8. Epub 2013 Mar 6.

Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1038/nature11968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3798000PMC
March 2013

Release factor one is nonessential in Escherichia coli.

ACS Chem Biol 2012 Aug 13;7(8):1337-44. Epub 2012 Jun 13.

The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1021/cb300229qDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3423824PMC
August 2012

RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

Nat Chem Biol 2011 Sep 18;7(11):779-86. Epub 2011 Sep 18.

The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nchembio.657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3201715PMC
September 2011

Transgenerational epigenetic instability is a source of novel methylation variants.

Science 2011 Oct 15;334(6054):369-73. Epub 2011 Sep 15.

Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1126/science.1212959DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210014PMC
October 2011