Matthew A Field

Matthew A Field

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Matthew A Field

Matthew A Field

Publications by authors named "Matthew A Field"

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18Publications

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consensusDE: an R package for assessing consensus of multiple RNA-seq algorithms with RUV correction.

PeerJ 2019 13;7:e8206. Epub 2019 Dec 13.

Australian Institute for Tropical Health and Medicine, Centre for Tropical Bioinformatics and Molecular Biology, Centre for Molecular Therapeutics, James Cook University, Smithfield, Australia.

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http://dx.doi.org/10.7717/peerj.8206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913255PMC
December 2019

Recurrent miscalling of missense variation from short-read genome sequence data.

BMC Genomics 2019 Jul 16;20(Suppl 8):546. Epub 2019 Jul 16.

Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australian Capital Territory, Australia.

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http://dx.doi.org/10.1186/s12864-019-5863-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6631443PMC
July 2019

Characterization of secreted proteins and extracellular vesicles provides new insights into host-parasite communication.

J Extracell Vesicles 2018 21;7(1):1428004. Epub 2018 Jan 21.

Centre for Biodiscovery and Molecular Development of Therapeutics, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, QLD, Australia.

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http://dx.doi.org/10.1080/20013078.2018.1428004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5795766PMC
January 2018

Reliably Detecting Clinically Important Variants Requires Both Combined Variant Calls and Optimized Filtering Strategies.

PLoS One 2015 23;10(11):e0143199. Epub 2015 Nov 23.

Department of Immunology, John Curtin School of Medical Research, Australian National University, Canberra, ACT, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143199PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4658170PMC
June 2016

DeepSNVMiner: a sequence analysis tool to detect emergent, rare mutations in subsets of cell populations.

PeerJ 2016 24;4:e2074. Epub 2016 May 24.

Department of Immunology, John Curtin School of Medical Research, Australian National University , Canberra ACT , Australia.

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http://dx.doi.org/10.7717/peerj.2074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4888318PMC
June 2016

Tumour procurement, DNA extraction, coverage analysis and optimisation of mutation-detection algorithms for human melanoma genomes.

Pathology 2015 Dec;47(7):683-93

1Melanoma Institute Australia, North Sydney, NSW 2Sydney Medical School, The University of Sydney, Camperdown, NSW 3Immunogenomics Laboratory, Australian National University, Canberra, ACT 4Oncogenomics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane, Qld 5Centre for Cancer Research, The University of Sydney at Westmead Millennium Institute, Westmead, NSW 6Bioplatforms Australia, Macquarie University, North Ryde, NSW 7Ludwig Institute for Cancer Research, Olivia Newton-John Cancer and Wellness Centre, Austin Health, Heidelberg, Vic 8The Cancer Development and Treatment Laboratory, Peter MacCallum Cancer Centre and Sir Peter MacCallum Department of Oncology, The University of Melbourne, Vic 9Departments of Melanoma and Surgical Oncology 10Tissue Pathology and Diagnostic Oncology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia; these authors contributed equally.

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http://dx.doi.org/10.1097/PAT.0000000000000324DOI Listing
December 2015

Reducing the search space for causal genetic variants with VASP.

Bioinformatics 2015 Jul 8;31(14):2377-9. Epub 2015 Mar 8.

Department of Immunology, John Curtin School of Medical Research, Australian National University, Canberra City, ACT 2601, Australia, Immunogenomics Group, Immunology Research Program, Garvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btv135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495293PMC
July 2015

Zinc-finger protein ZFP318 is essential for expression of IgD, the alternatively spliced Igh product made by mature B lymphocytes.

Proc Natl Acad Sci U S A 2014 Mar 10;111(12):4513-8. Epub 2014 Mar 10.

Department of Immunology and Australian Phenomics Facility, John Curtin School of Medical Research, Australian National University, Canberra, ACT 2601, Australia.

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http://dx.doi.org/10.1073/pnas.1402739111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970522PMC
March 2014

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Genome Res 2007 Jun;17(6):760-74

Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://mendel.stanford.edu/sidowlab/pdfs/2007EncodeGR.pdf
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http://www.genome.org/cgi/doi/10.1101/gr.6034307
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http://dx.doi.org/10.1101/gr.6034307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891336PMC
June 2007

Plastid-targeting peptides from the chlorarachniophyte Bigelowiella natans.

J Eukaryot Microbiol 2004 Sep-Oct;51(5):529-35

Canadian Institute for Advanced Research, Department of Botany, University of British Columbia, 3529-6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada.

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http://dx.doi.org/10.1111/j.1550-7408.2004.tb00288.xDOI Listing
March 2005