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Mats Nilsson | PubFacts

Publications by authors named "Mats Nilsson"

100Publications

Chronic Atmospheric Reactive Nitrogen Deposition Suppresses Biological Nitrogen Fixation in Peatlands.

Environ Sci Technol 2021 Jan 4;55(2):1310-1318. Epub 2021 Jan 4.

School of Geography, Earth, and Environmental Sciences, and Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, United Kingdom.

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January 2021

Automated identification of the mouse brain's spatial compartments from in situ sequencing data.

BMC Biol 2020 10 19;18(1):144. Epub 2020 Oct 19.

Centre for Image Analysis, Department of Information Technology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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October 2020

COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data.

Glob Chang Biol 2020 Dec 7;26(12):7268-7283. Epub 2020 Oct 7.

Beijing Research & Development Centre for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.

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December 2020

Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue.

Nucleic Acids Res 2020 11;48(19):e112

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 171 65 Solna, Sweden.

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November 2020

Single Cell RNA Expression Analysis Using Flow Cytometry Based on Specific Probe Ligation and Rolling Circle Amplification.

ACS Sens 2020 10 24;5(10):3031-3036. Epub 2020 Sep 24.

School of Biomedical Sciences and School of Medicine, Huaqiao University, Quanzhou 362021, China.

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October 2020

Sex and Age Influence the Associated Risk of Depression in Patients with Psoriasis: A Retrospective Population Study Based on Diagnosis and Drug-Use.

Dermatology 2020 Sep 14:1-8. Epub 2020 Sep 14.

Department of Clinical and Experimental Medicine, Faculty of Medicine and Health Sciences, Linköping University, Linköping, Sweden,

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September 2020

Altered energy partitioning across terrestrial ecosystems in the European drought year 2018.

Philos Trans R Soc Lond B Biol Sci 2020 10 7;375(1810):20190524. Epub 2020 Sep 7.

Institute of Bio- and Geosciences: Agrosphere (IBG3), Forschungszentrum Jülich, Wilhelm-Johnen-Straße, 52428 Jülich, Germany.

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October 2020

Psoriasis is Associated with a High Comedication Burden: A Population Based Register Study.

Dermatol Ther (Heidelb) 2020 Dec 4;10(6):1285-1298. Epub 2020 Sep 4.

Department of Clinical and Experimental Medicine, Faculty of Medicine and Health Sciences, Linköping University, Linköping, Sweden.

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December 2020

Bimodal diel pattern in peatland ecosystem respiration rebuts uniform temperature response.

Nat Commun 2020 08 26;11(1):4255. Epub 2020 Aug 26.

Department of Forest Ecology & Management, Swedish University of Agricultural Sciences, Umeå, Sweden.

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August 2020

Sub-attomole detection of HIV-1 using padlock probes and rolling circle amplification combined with microfluidic affinity chromatography.

Biosens Bioelectron 2020 Oct 26;166:112442. Epub 2020 Jul 26.

Division of Nanobiotechnology, Department of Protein Science, Science for Life Laboratory, KTH Royal Institute of Technology, Solna, Sweden. Electronic address:

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October 2020

Bone marrow-derived mitochondrial DNA has limited capacity for inter-tissue transfer in vivo.

FASEB J 2020 Jul 22;34(7):9297-9306. Epub 2020 May 22.

Molecular Genetics Laboratory, Molecular Diagnostics Division, London Health Sciences Centre, Children's Health Research Institute, London, ON, Canada.

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July 2020

In Situ Sequencing: A High-Throughput, Multi-Targeted Gene Expression Profiling Technique for Cell Typing in Tissue Sections.

Methods Mol Biol 2020 ;2148:313-329

Molecular Diagnostics, Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden.

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January 2020

Evaluation of a low-dose protocol for cone beam computed tomography of the temporomandibular joint.

Dentomaxillofac Radiol 2020 Sep 9;49(6):20190495. Epub 2020 Apr 9.

Department of Oral and Maxillofacial Radiology, Faculty of Odontology, Malmö University, Malmö, Sweden.

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September 2020

Formation and mobilization of methylmercury across natural and experimental sulfur deposition gradients.

Environ Pollut 2020 Aug 17;263(Pt A):114398. Epub 2020 Mar 17.

Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Lennart Hjelms väg 9, SE-756 51, Uppsala, Sweden.

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August 2020

Dose distributions in adult and child head phantoms for panoramic and cone beam computed tomography imaging of the temporomandibular joint.

Oral Surg Oral Med Oral Pathol Oral Radiol 2020 Aug 21;130(2):200-208. Epub 2020 Feb 21.

Department of Oral and Maxillofacial Radiology, Faculty of Odontology, Malmö University, Malmö, Sweden. Electronic address:

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August 2020

Opposing spatial trends in methylmercury and total mercury along a peatland chronosequence trophic gradient.

Sci Total Environ 2020 May 13;718:137306. Epub 2020 Feb 13.

Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden.

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May 2020

OPENchip: an on-chip in situ molecular profiling platform for gene expression analysis and oncogenic mutation detection in single circulating tumour cells.

Lab Chip 2020 03;20(5):912-922

Interdisciplinary Program in Bioengineering, Seoul National University, Seoul, 08826, South Korea. and Department of Electrical and Computer Engineering, Seoul National University, Seoul, 08826, South Korea and BK21+ Creative Research Engineer Development for IT, Seoul National University, Seoul, 08826, South Korea and Biomedical Research Institute, Seoul National University Hospital, Seoul, 03080, Republic of Korea and Institutes of Entrepreneurial BioConvergence, Seoul National University, Seoul, 08826, Republic of Korea.

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March 2020

The sweet detection of rolling circle amplification: Glucose-based electrochemical genosensor for the detection of viral nucleic acid.

Biosens Bioelectron 2020 Mar 30;151:112002. Epub 2019 Dec 30.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Sweden. Electronic address:

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March 2020

Spatiotemporal mapping of RNA editing in the developing mouse brain using in situ sequencing reveals regional and cell-type-specific regulation.

BMC Biol 2020 01 14;18(1). Epub 2020 Jan 14.

Department of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, SE-171 21, Solna, Sweden.

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January 2020

The reminiscence bump is blind to blindness: Evidence from sound- and odor-evoked autobiographical memory.

Conscious Cogn 2020 02 7;78:102876. Epub 2020 Jan 7.

Gösta Ekman Laboratory, Department of Psychology, Stockholm University, Stockholm, Sweden.

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February 2020

Shifts in mercury methylation across a peatland chronosequence: From sulfate reduction to methanogenesis and syntrophy.

J Hazard Mater 2020 04 23;387:121967. Epub 2019 Dec 23.

Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University, SE-75236 Uppsala, Sweden; Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden.

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April 2020

Digital Rolling Circle Amplification-Based Detection of Ebola and Other Tropical Viruses.

J Mol Diagn 2020 02 16;22(2):272-283. Epub 2019 Dec 16.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden. Electronic address:

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February 2020

Probabilistic cell typing enables fine mapping of closely related cell types in situ.

Nat Methods 2020 01 18;17(1):101-106. Epub 2019 Nov 18.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

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January 2020

Expanding the Clinical Spectrum of -Related Mitochondrial Cytopathy.

Front Neurol 2019 4;10:981. Epub 2019 Oct 4.

Department of Pediatrics, McMaster University, Hamilton, ON, Canada.

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October 2019

The Echobot: An automated system for stimulus presentation in studies of human echolocation.

PLoS One 2019 4;14(10):e0223327. Epub 2019 Oct 4.

Gösta Ekman Laboratory, Department of Psychology, Stockholm University, Stockholm, Sweden.

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March 2020

Generation of in situ sequencing based OncoMaps to spatially resolve gene expression profiles of diagnostic and prognostic markers in breast cancer.

EBioMedicine 2019 Oct 13;48:212-223. Epub 2019 Sep 13.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden. Electronic address:

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October 2019

Profiling surface proteins on individual exosomes using a proximity barcoding assay.

Nat Commun 2019 08 26;10(1):3854. Epub 2019 Aug 26.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, SE-75 185, Uppsala, Sweden.

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August 2019

Impact of Cigarette Smoking and Head and Neck Squamous Cell Carcinoma on Circulating Inflammatory Biomarkers.

Oncology 2020 22;98(1):42-47. Epub 2019 Aug 22.

Department of Laboratory Medicine, Region Jönköping County, and Department of Medical and Health Sciences, Linköping University, Linköping, Sweden.

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January 2020

Homogeneous Differential Magnetic Assay.

ACS Sens 2019 09 22;4(9):2381-2388. Epub 2019 Aug 22.

The Ångström Laboratory, Department of Engineering Sciences , Uppsala University , Box 534, SE-751 21 Uppsala , Sweden.

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September 2019

Nutrition and exercise in Pompe disease.

Ann Transl Med 2019 Jul;7(13):282

Department of Pediatrics, McMaster University, Hamilton, Ontario, Canada.

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July 2019

CBCT of Swedish children and adolescents at an oral and maxillofacial radiology department. A survey of requests and indications.

Acta Odontol Scand 2020 Jan 6;78(1):38-44. Epub 2019 Aug 6.

Department of Oral and Maxillofacial Radiology, Faculty of Odontology, Malmö University, Malmö, Sweden.

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January 2020

Mitochondria and Aging-The Role of Exercise as a Countermeasure.

Biology (Basel) 2019 May 11;8(2). Epub 2019 May 11.

Department of Pediatrics and Medicine, McMaster University Medical Center, Hamilton, ON L8S 4L8, Canada.

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May 2019

Using machine learning to generate high-resolution wet area maps for planning forest management: A study in a boreal forest landscape.

Ambio 2020 Feb 9;49(2):475-486. Epub 2019 May 9.

Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden.

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February 2020

Correction to: Efficient DNA-assisted synthesis of trans-membrane gold nanowires.

Microsyst Nanoeng 2018 4;4. Epub 2018 Jun 4.

1Department of Micro and Nanosystems, KTH Royal Institute of Technology, Osquldas väg 10, Stockholm, 100 44 Sweden.

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June 2018

Spatial and temporal localization of immune transcripts defines hallmarks and diversity in the tuberculosis granuloma.

Nat Commun 2019 04 23;10(1):1823. Epub 2019 Apr 23.

Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, 171 77, Stockholm, Sweden.

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April 2019

Causes of Death in Implant Patients Treated in the Edentulous Jaw: A Comparison between 2098 Deceased Patients and the Swedish National Cause of Death Register.

Int J Dent 2019 11;2019:7315081. Epub 2019 Mar 11.

Prosthodontist, Brånemark Clinic, Public Dental Health Care Service, Gothenburg, Västra Götaland, Sweden.

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March 2019

A novel mutation tolerant padlock probe design for multiplexed detection of hypervariable RNA viruses.

Sci Rep 2019 02 27;9(1):2872. Epub 2019 Feb 27.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, SE- 171 65, Solna, Sweden.

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February 2019

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.

Commun Biol 2018 28;1:209. Epub 2018 Nov 28.

1Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Tomtebodavägen 23a, 17165 Solna, Stockholm Sweden.

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November 2018

Expression profiling and in situ screening of circular RNAs in human tissues.

Sci Rep 2018 11 16;8(1):16953. Epub 2018 Nov 16.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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November 2018

Patients' self-reported nausea: Validation of the Numerical Rating Scale and of a daily summary of repeated Numerical Rating Scale scores.

J Clin Nurs 2019 Mar 8;28(5-6):959-968. Epub 2018 Nov 8.

School of Health and Welfare, Jönköping University, Jönköping, Sweden.

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March 2019

Distribution of non-motor symptoms in idiopathic Parkinson's disease and secondary Parkinsonism.

J Multidiscip Healthc 2018 4;11:525-534. Epub 2018 Oct 4.

FUTURUM, Academy for Health and Care, Region Jönköping County, Jönköping, Sweden,

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October 2018

Chimeric padlock and iLock probes for increased efficiency of targeted RNA detection.

RNA 2019 01 11;25(1):82-89. Epub 2018 Oct 11.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, SE 171 65, Solna, Sweden.

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January 2019

Padlock Probe Assay for Detection and Subtyping of Seasonal Influenza.

Clin Chem 2018 12 26;64(12):1704-1712. Epub 2018 Sep 26.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden;

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December 2018

In Situ Detection of Adenovirus DNA and mRNA in Individual Cells.

Curr Protoc Microbiol 2018 05 27;49(1):e54. Epub 2018 Apr 27.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

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May 2018

The Effect of Blindness on Long-Term Episodic Memory for Odors and Sounds.

Front Psychol 2018 20;9:1003. Epub 2018 Jun 20.

Gösta Ekman Laboratory, Department of Psychology, Stockholm University, Stockholm, Sweden.

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June 2018

Learning to extract a large inter-aural level difference in lag clicks.

Authors:
Mats E Nilsson

J Acoust Soc Am 2018 06;143(6):EL456

Department of Psychology, Gösta Ekman Laboratory, Stockholm University, SE-106 91, Stockholm, Sweden

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June 2018

Performing Contrast Analysis in Factorial Designs: From NHST to Confidence Intervals and Beyond.

Educ Psychol Meas 2017 Aug 6;77(4):690-715. Epub 2016 Oct 6.

Department of Psychology, Stockholm University, Stockholm, Sweden.

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August 2017

Peatland vegetation composition and phenology drive the seasonal trajectory of maximum gross primary production.

Sci Rep 2018 05 22;8(1):8012. Epub 2018 May 22.

Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.

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May 2018

Network Visualization and Analysis of Spatially Aware Gene Expression Data with InsituNet.

Cell Syst 2018 05 9;6(5):626-630.e3. Epub 2018 May 9.

EMBL Australia Group, Infection and Immunity Theme, South Australian Health and Medical Research Institute, North Terrace, Adelaide, SA 5000, Australia; School of Medicine, Flinders University, Bedford Park, SA 5042, Australia. Electronic address:

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May 2018

Partitioning of the net CO exchange using an automated chamber system reveals plant phenology as key control of production and respiration fluxes in a boreal peatland.

Glob Chang Biol 2018 08 24;24(8):3436-3451. Epub 2018 May 24.

Department of Forest Ecology & Management, Swedish University of Agricultural Sciences, Umeå, Sweden.

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August 2018

Late cutaneous effects of a local potent steroid during adjuvant radiotherapy for breast cancer.

Clin Transl Radiat Oncol 2017 Dec 7;7:9-12. Epub 2017 Oct 7.

Dept. of Oncology, County Hospital Ryhov, Jönköping, Sweden.

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December 2017

Limited reverse transcriptase activity of phi29 DNA polymerase.

Nucleic Acids Res 2018 04;46(7):3625-3632

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, SE-171 65, Sweden.

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April 2018

Placing RNA in context and space - methods for spatially resolved transcriptomics.

FEBS J 2019 04 31;286(8):1468-1481. Epub 2018 Mar 31.

Science for Life Laboratory, Department of Biophysics and biochemistry, Stockholm University, Solna, Sweden.

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April 2019

The effect of an active steering system on city bus drivers' muscle activity.

Int J Occup Saf Ergon 2019 Sep 26;25(3):377-385. Epub 2018 Mar 26.

a The Swedish National Road and Transport Research Institute (VTI) , Sweden.

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September 2019

Radiation dose from X-ray examinations of impacted canines: cone beam CT vs two-dimensional imaging.

Dentomaxillofac Radiol 2018 Feb 16;47(3):20170305. Epub 2018 Jan 16.

1 Department of Dental medicine, Karolinska Institutet , Stockholm , Sweden.

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February 2018

Microfluidic magnetic fluidized bed for DNA analysis in continuous flow mode.

Biosens Bioelectron 2018 Apr 26;102:531-539. Epub 2017 Nov 26.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Tomtebodavägen 23B, SE-171 65 Solna, Stockholm, Sweden. Electronic address:

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April 2018

Mercury evasion from a boreal peatland shortens the timeline for recovery from legacy pollution.

Sci Rep 2017 11 22;7(1):16022. Epub 2017 Nov 22.

Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden.

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November 2017

Padlock Probes to Detect Single Nucleotide Polymorphisms.

Methods Mol Biol 2018 ;1649:209-229

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Box 1031, 171 21, Solna, Sweden.

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June 2018

Microbial mineralization of cellulose in frozen soils.

Nat Commun 2017 10 27;8(1):1154. Epub 2017 Oct 27.

Department of Forest Ecology & Management, Swedish University of Agricultural Sciences (SLU), Skogsmarksgränd, Umeå, SE-901 83, Sweden.

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October 2017

Fidelity of RNA templated end-joining by chlorella virus DNA ligase and a novel iLock assay with improved direct RNA detection accuracy.

Nucleic Acids Res 2017 Oct;45(18):e161

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, SE-171 65 Solna, Sweden.

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October 2017

Evaluation of image quality and radiation dose of abdominal dual-energy CT.

Acta Radiol 2018 Jul 19;59(7):845-852. Epub 2017 Sep 19.

1 Department of Translational Medicine - Medical Radiology, Lund University, Lund, Sweden.

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July 2018

Rapid Antibiotic Susceptibility Testing for Urinary Tract Infections.

Methods Mol Biol 2017 ;1616:147-153

Department of Medical Biochemistry and Microbiology, Uppsala University, Box 256, Uppsala, 751 05, Sweden.

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March 2018

The clinical applicability of a daily summary of patients' self-reported postoperative pain-A repeated measure analysis.

J Clin Nurs 2017 Dec 18;26(23-24):4675-4684. Epub 2017 May 18.

School of Health and Welfare, Jönköping University, Jönköping, Sweden.

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December 2017

Simultaneous Single-Cell Analysis of Human Adenovirus Type 5 DNA and mRNA Expression Patterns in Lytic and Persistent Infection.

J Virol 2017 06 12;91(11). Epub 2017 May 12.

Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden

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June 2017

Data on the auditory duration mismatch negativity for different sound pressure levels and visual perceptual loads.

Data Brief 2017 Apr 8;11:159-164. Epub 2017 Feb 8.

Gösta Ekman Laboratory, Department of Psychology, Stockholm University, Frescati Hagväg 9A, Stockholm, Sweden.

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April 2017

When Perception Trumps Reality.

Psychol Sci 2017 03 1;28(3):346-355. Epub 2017 Jan 1.

Gösta Ekman Laboratory, Department of Psychology, Stockholm University.

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March 2017

Targeted DNA sequencing and in situ mutation analysis using mobile phone microscopy.

Nat Commun 2017 01 17;8:13913. Epub 2017 Jan 17.

Science for Life Laboratory, Department of Immunology, genetics and pathology, Uppsala University, Box 815, 751 08 Uppsala, Sweden.

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January 2017