Publications by authors named "Mathias Walzer"

22Publications

ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.

J Proteome Res 2020 01 6;19(1):537-542. Epub 2019 Dec 6.

European Molecular Biology Laboratory , European Bioinformatics Institute (EMBL-EBI) , Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD , United Kingdom.

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http://dx.doi.org/10.1021/acs.jproteome.9b00328DOI Listing
January 2020

Review of Issues and Solutions to Data Analysis Reproducibility and Data Quality in Clinical Proteomics.

Methods Mol Biol 2020 ;2051:345-371

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.

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http://dx.doi.org/10.1007/978-1-4939-9744-2_15DOI Listing
October 2020

OpenMS - A platform for reproducible analysis of mass spectrometry data.

J Biotechnol 2017 Nov 27;261:142-148. Epub 2017 May 27.

Applied Bioinformatics, Department for Computer Science, University of Tuebingen, Sand 14, 72076 Tuebingen, Germany; Center for Bioinformatics, University of Tuebingen, Sand 14, 72076 Tuebingen, Germany; Center for Quantitative Biology, University of Tuebingen, Sand 14, 72076 Tuebingen, Germany; Biomolecular Interactions, Max Planck Institute for Developmental Biology, Spemannstr. 35, 72076 Tuebingen, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jbiotec.2017.05.016DOI Listing
November 2017

ImmunoNodes - graphical development of complex immunoinformatics workflows.

BMC Bioinformatics 2017 May 8;18(1):242. Epub 2017 May 8.

Center for Bioinformatics, University of Tübingen, Tübingen, 72076, Germany.

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http://dx.doi.org/10.1186/s12859-017-1667-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5422934PMC
May 2017

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

Anal Chem 2017 04 30;89(8):4474-4479. Epub 2017 Mar 30.

Division of Molecular Biology and Human Genetics, Stellenbosch University Faculty of Medicine and Health Sciences , Tygerberg Hospital, Francie Van Zijl Drive, Cape Town 7505, South Africa.

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http://dx.doi.org/10.1021/acs.analchem.6b04310DOI Listing
April 2017

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.

Nat Methods 2016 Aug 27;13(8):651-656. Epub 2016 Jun 27.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1038/nmeth.3902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968634PMC
August 2016

FRED 2: an immunoinformatics framework for Python.

Bioinformatics 2016 07 26;32(13):2044-6. Epub 2016 Feb 26.

Center for Bioinformatics, University of Tübingen, Tübingen 72076, Germany Department of Computer Science, Applied Bioinformatics, Tübingen 72076, Germany Quantitative Biology Center, Tübingen 72076, Germany Faculty of Medicine, University of Tübingen, Tübingen 72076, Germany Max Planck Institute for Developmental Biology, Biomolecular Interactions, Tübingen 72076, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btw113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920123PMC
July 2016

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Mol Cell Proteomics 2013 Aug 18;12(8):2332-40. Epub 2013 Apr 18.

Quantitative Biology Center and Department of Computer Science, Center for Bioinformatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1074/mcp.O113.028506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734589PMC
August 2013

Mouse urinary peptides provide a molecular basis for genotype discrimination by nasal sensory neurons.

Nat Commun 2013 ;4:1616

Department of Immunology, Institute for Cell Biology, University of Tübingen, Tübingen, Germany.

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http://dx.doi.org/10.1038/ncomms2610DOI Listing
October 2013