Masataka Tsuda

Masataka Tsuda

UNVERIFIED PROFILE

Are you Masataka Tsuda?   Register this Author

Register author
Masataka Tsuda

Masataka Tsuda

Publications by authors named "Masataka Tsuda"

Are you Masataka Tsuda?   Register this Author

100Publications

1322Reads

49Profile Views

Lessons from the genomes of lindane-degrading sphingomonads.

Environ Microbiol Rep 2019 Oct 21;11(5):630-644. Epub 2019 May 21.

Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1758-2229.12762DOI Listing
October 2019

Conjugative Transfer of IncP-9 Catabolic Plasmids Requires a Previously Uncharacterized Gene, , Whose Homologs Are Conserved in Various MPF-Type Plasmids.

Appl Environ Microbiol 2019 Oct 11. Epub 2019 Oct 11.

Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.01850-19DOI Listing
October 2019

Repair of trapped topoisomerase II covalent cleavage complexes: Novel proteasome-independent mechanisms.

Nucleosides Nucleotides Nucleic Acids 2019 Oct 12:1-15. Epub 2019 Oct 12.

Program of Mathematical and Life Sciences, Department of Integrated Sciences for Life, Graduate School of Integrated Sciences for Life, Hiroshima University , Higashi-Hiroshima , Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/15257770.2019.1674332DOI Listing
October 2019

Processing of a single ribonucleotide embedded into DNA by human nucleotide excision repair and DNA polymerase η.

Sci Rep 2019 Sep 26;9(1):13910. Epub 2019 Sep 26.

Department of Biology, Graduate School of Science, Chiba University, Chiba, 263-8522, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-019-50421-8DOI Listing
September 2019

Complete Genome Sequence of sp. Strain S3, a Marine Clade Member Capable of Degrading Carbazole.

Microbiol Resour Announc 2019 Jul 11;8(28). Epub 2019 Jul 11.

Biotechnology Research Center, The University of Tokyo, Tokyo, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/MRA.00231-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624753PMC
July 2019

Suppression of substrate inhibition in phenanthrene-degrading Mycobacterium by co-cultivation with a non-degrading Burkholderia strain.

Microbiology 2019 Jun 17;165(6):625-637. Epub 2019 Apr 17.

1 Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mic.0.000801DOI Listing
June 2019

SUMOylation of PCNA by PIAS1 and PIAS4 promotes template switch in the chicken and human B cell lines.

Proc Natl Acad Sci U S A 2018 12 28;115(50):12793-12798. Epub 2018 Nov 28.

Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, 606-8501 Kyoto, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1716349115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6294928PMC
December 2018

Optimization of single strand DNA incorporation reaction by Moloney murine leukaemia virus reverse transcriptase.

DNA Res 2018 Oct;25(5):477-487

Department of Molecular and Chemical Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/dnares/dsy018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191310PMC
October 2018

Establishment of plasmid vector and allelic exchange mutagenesis systems in a mycobacterial strain that is able to degrade polycyclic aromatic hydrocarbon.

Biosci Biotechnol Biochem 2018 Jul 9;82(7):1169-1171. Epub 2018 Mar 9.

a Graduate School of Life Sciences , Tohoku University , Sendai , Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/09168451.2018.1445522DOI Listing
July 2018

Complementation of aprataxin deficiency by base excision repair enzymes in mitochondrial extracts.

Nucleic Acids Res 2017 Sep;45(17):10079-10088

Genome Integrity and Structural Biology Laboratory, DNA Repair and Nucleic Acid Enzymology Group, National Institutes of Health, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkx654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622373PMC
September 2017

Compounds that enhance the tailing activity of Moloney murine leukemia virus reverse transcriptase.

Sci Rep 2017 07 26;7(1):6520. Epub 2017 Jul 26.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-017-04765-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5529421PMC
July 2017

Efficient N-tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase.

Sci Rep 2017 02 2;7:41769. Epub 2017 Feb 2.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/srep41769
Publisher Site
http://dx.doi.org/10.1038/srep41769DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288710PMC
February 2017

Host Range of the Conjugative Transfer System of IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Characterization of Its oriT Region and Relaxase.

Appl Environ Microbiol 2017 01 15;83(1). Epub 2016 Dec 15.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan

View Article

Download full-text PDF

Source
http://aem.asm.org/lookup/doi/10.1128/AEM.02359-16
Publisher Site
http://dx.doi.org/10.1128/AEM.02359-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5165122PMC
January 2017

Mre11 Is Essential for the Removal of Lethal Topoisomerase 2 Covalent Cleavage Complexes.

Mol Cell 2016 11;64(3):580-592

Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, Yoshida Konoe, Sakyo-ku, Kyoto 606-8501, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.molcel.2016.10.011DOI Listing
November 2016

In vivo evidence for translesion synthesis by the replicative DNA polymerase δ.

Nucleic Acids Res 2016 09 16;44(15):7242-50. Epub 2016 May 16.

Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, Yoshidakonoe, Sakyo-ku, Kyoto 606-8501, Japan

View Article

Download full-text PDF

Source
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkw439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009730PMC
September 2016

Biodegradation of γ-hexachlorocyclohexane by transgenic hairy root cultures of Cucurbita moschata that accumulate recombinant bacterial LinA.

Plant Cell Rep 2016 Sep 13;35(9):1963-74. Epub 2016 Jun 13.

Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00299-016-2011-1DOI Listing
September 2016

Repriming by PrimPol is critical for DNA replication restart downstream of lesions and chain-terminating nucleosides.

Cell Cycle 2016 Aug 26;15(15):1997-2008. Epub 2016 May 26.

a Department of Chemistry , Graduate School of Science and Engineering, Tokyo Metropolitan University , Hachioji-shi, Tokyo , Japan.

View Article

Download full-text PDF

Source
https://www.tandfonline.com/doi/full/10.1080/15384101.2016.1
Publisher Site
http://dx.doi.org/10.1080/15384101.2016.1191711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968974PMC
August 2016

Complete genome sequence of Burkholderia caribensis Bcrs1W (NBRC110739), a strain co-residing with phenanthrene degrader Mycobacterium sp. EPa45.

J Biotechnol 2016 Jun 26;228:67-68. Epub 2016 Apr 26.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jbiotec.2016.04.042DOI Listing
June 2016

Properties and biotechnological applications of natural and engineered haloalkane dehalogenases.

Appl Microbiol Biotechnol 2015 Dec 16;99(23):9865-81. Epub 2015 Sep 16.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/content/pdf/10.1007%2Fs00253-015-69
Web Search
http://link.springer.com/10.1007/s00253-015-6954-x
Publisher Site
http://dx.doi.org/10.1007/s00253-015-6954-xDOI Listing
December 2015

Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome.

Proc Natl Acad Sci U S A 2015 Nov 3;112(46):14343-7. Epub 2015 Nov 3.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Katahira, Aoba-ku, Sendai 980-8577, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1514326112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4655564PMC
November 2015

Complete Genome Sequence of a Phenanthrene Degrader, Burkholderia sp. HB-1 (NBRC 110738).

Genome Announc 2015 Nov 5;3(6). Epub 2015 Nov 5.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://genomea.asm.org/lookup/doi/10.1128/genomeA.01283-15
Publisher Site
http://dx.doi.org/10.1128/genomeA.01283-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4645203PMC
November 2015

Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts.

Appl Microbiol Biotechnol 2015 May 10;99(10):4453-70. Epub 2015 Jan 10.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00253-014-6322-2DOI Listing
May 2015

Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.

DNA Res 2014 25;21(2):217-27. Epub 2013 Nov 25.

1Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 B-36, Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.

View Article

Download full-text PDF

Source
https://academic.oup.com/dnaresearch/article-lookup/doi/10.1
Publisher Site
http://dx.doi.org/10.1093/dnares/dst052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989492PMC
April 2015

SUMO-targeted ubiquitin ligase RNF4 plays a critical role in preventing chromosome loss.

Genes Cells 2014 Oct 10;19(10):743-54. Epub 2014 Sep 10.

Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, Yoshidakonoe, Sakyo-ku, Kyoto, 606-8501, Japan; Department of Chemistry, Graduate School of Science and Engineering, Tokyo Metropolitan University, Minamiosawa 1-1, Hachioji-shi, Tokyo, 192-0397, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/gtc.12173DOI Listing
October 2014

Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis.

Microbiology 2014 May 14;160(Pt 5):883-91. Epub 2014 Feb 14.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mic.0.077057-0DOI Listing
May 2014

Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937).

Genome Announc 2014 Jan 23;2(1). Epub 2014 Jan 23.

Department of Applied Chemistry and Biochemical Engineering, Graduate School of Engineering, Shizuoka University, Hamamatsu, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.01213-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3900906PMC
January 2014

Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a γ-Hexachlorocyclohexane-Degrading Mixed Culture.

Genome Announc 2014 Jan 30;2(1). Epub 2014 Jan 30.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.01241-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907731PMC
January 2014

Complete Genome Sequence of Ralstonia pickettii DTP0602, a 2,4,6-Trichlorophenol Degrader.

Genome Announc 2013 Oct 31;1(6). Epub 2013 Oct 31.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00903-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814637PMC
October 2013

Inhibitory effect of Pseudomonas putida nitrogen-related phosphotransferase system on conjugative transfer of IncP-9 plasmid from Escherichia coli.

FEMS Microbiol Lett 2013 Aug 19;345(2):102-9. Epub 2013 Jun 19.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1574-6968.12188DOI Listing
August 2013

Analysis of extracellular alginate lyase (alyA) expression and its regulatory region in a marine bacterial strain, Pseudoalteromonas atlantica AR06, using a gfp gene reporter system.

Mar Biotechnol (NY) 2013 Jun 20;15(3):349-56. Epub 2012 Nov 20.

National Research Institute of Fisheries Science, Fisheries Research Agency, 2-12-4 Fukuura, Kanazawa, Yokohama, Kanagawa, 236-8648, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/content/pdf/10.1007/s10126-012-9488
Web Search
http://link.springer.com/10.1007/s10126-012-9488-6
Publisher Site
http://dx.doi.org/10.1007/s10126-012-9488-6DOI Listing
June 2013

Crystal structure and site-directed mutagenesis analyses of haloalkane dehalogenase LinB from Sphingobium sp. strain MI1205.

J Bacteriol 2013 Jun 5;195(11):2642-51. Epub 2013 Apr 5.

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://jb.asm.org/cgi/doi/10.1128/JB.02020-12
Publisher Site
http://dx.doi.org/10.1128/JB.02020-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676048PMC
June 2013

Cointegrate-resolution of toluene-catabolic transposon Tn4651: determination of crossover site and the segment required for full resolution activity.

Plasmid 2013 Jan 1;69(1):24-35. Epub 2012 Aug 1.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.plasmid.2012.07.004DOI Listing
January 2013

Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.

J Bacteriol 2012 Dec;194(24):6970-1

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.01848-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510582PMC
December 2012

ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids.

Environ Microbiol 2012 Nov 28;14(11):2946-59. Epub 2012 Aug 28.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1462-2920.2012.02861.xDOI Listing
November 2012

Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element.

J Bacteriol 2012 Aug 8;194(16):4237-48. Epub 2012 Jun 8.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Katahira, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.00352-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3416211PMC
August 2012

Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil.

FEMS Microbiol Lett 2012 May 12;330(1):46-55. Epub 2012 Mar 12.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1574-6968.2012.02532.xDOI Listing
May 2012

Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation.

Microbiology 2012 May 23;158(Pt 5):1284-93. Epub 2012 Feb 23.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1099/mic.0.057372-0DOI Listing
May 2012

Novel pathway of centrosome amplification that does not require DNA lesions.

Cancer Sci 2012 Feb 15;103(2):191-6. Epub 2011 Dec 15.

Faculty of Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1349-7006.2011.02152.xDOI Listing
February 2012

The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids.

Biosci Biotechnol Biochem 2011 7;75(3):466-72. Epub 2011 Mar 7.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1271/bbb.100652DOI Listing
August 2011

Involvement of SLX4 in interstrand cross-link repair is regulated by the Fanconi anemia pathway.

Proc Natl Acad Sci U S A 2011 Apr 4;108(16):6492-6. Epub 2011 Apr 4.

Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1018487108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3080998PMC
April 2011

Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology.

Environ Microbiol 2010 Sep 19;12(9):2539-58. Epub 2010 Apr 19.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1462-2920.2010.02227.xDOI Listing
September 2010

Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR06.

Appl Microbiol Biotechnol 2010 Mar 21;86(2):567-76. Epub 2009 Oct 21.

National Research Institute of Fisheries Science, Fisheries Research Agency, 2-12-4 Fukuura, Yokohama, 236-8648, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00253-009-2278-zDOI Listing
March 2010

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis.

ISME J 2009 Dec 9;3(12):1335-48. Epub 2009 Jul 9.

Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology, Tsukuba Central 6, Tsukuba, Ibaraki, Japan.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/ismej200976
Publisher Site
http://dx.doi.org/10.1038/ismej.2009.76DOI Listing
December 2009

Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate.

Nat Chem Biol 2009 Oct 23;5(10):727-33. Epub 2009 Aug 23.

Loschmidt Laboratories, Institute of Experimental Biology and National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nchembio.205DOI Listing
October 2009

Revised nomenclature for transposable genetic elements.

Plasmid 2008 Nov 26;60(3):167-73. Epub 2008 Sep 26.

Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London WC1X 8LD, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.plasmid.2008.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836210PMC
November 2008

Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifier in conjugative transfer.

J Bacteriol 2008 Oct 1;190(19):6281-9. Epub 2008 Aug 1.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.00709-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2566000PMC
October 2008

GenomeMatcher: a graphical user interface for DNA sequence comparison.

BMC Bioinformatics 2008 Sep 16;9:376. Epub 2008 Sep 16.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-9-376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553346PMC
September 2008

Insertion sequence-based cassette PCR: cultivation-independent isolation of gamma-hexachlorocyclohexane-degrading genes from soil DNA.

Appl Microbiol Biotechnol 2008 Jun 19;79(4):627-32. Epub 2008 Apr 19.

Department of Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00253-008-1463-9DOI Listing
June 2008

Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans.

Microbiology 2008 Jun;154(Pt 6):1763-74

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://mic.microbiologyresearch.org/content/journal/micro/10
Publisher Site
http://dx.doi.org/10.1099/mic.0.2007/015537-0DOI Listing
June 2008

Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.

Arch Microbiol 2007 Oct 22;188(4):313-25. Epub 2007 May 22.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00203-007-0251-8
Publisher Site
http://dx.doi.org/10.1007/s00203-007-0251-8DOI Listing
October 2007

Aerobic degradation of lindane (gamma-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.

Appl Microbiol Biotechnol 2007 Sep 19;76(4):741-52. Epub 2007 Jul 19.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai, 980-8577, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00253-007-1066-x
Publisher Site
http://dx.doi.org/10.1007/s00253-007-1066-xDOI Listing
September 2007

Identification and characterization of genes encoding a putative ABC-type transporter essential for utilization of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.

J Bacteriol 2007 May 16;189(10):3712-20. Epub 2007 Mar 16.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.01883-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1913331PMC
May 2007

Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 Apr 12;63(Pt 4):294-6. Epub 2007 Mar 12.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://scripts.iucr.org/cgi-bin/paper?S1744309107008652
Publisher Site
http://dx.doi.org/10.1107/S1744309107008652DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2330215PMC
April 2007

Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches.

Appl Microbiol Biotechnol 2007 Feb 10;74(2):501-10. Epub 2006 Nov 10.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00253-006-0671-4
Publisher Site
http://dx.doi.org/10.1007/s00253-006-0671-4DOI Listing
February 2007

Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.

Appl Environ Microbiol 2006 Nov 8;72(11):6923-33. Epub 2006 Sep 8.

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://aem.asm.org/cgi/doi/10.1128/AEM.01531-06
Publisher Site
http://dx.doi.org/10.1128/AEM.01531-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636184PMC
November 2006

Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102.

Mol Microbiol 2006 Jun;60(6):1563-75

Department of Environmental Life Sciences, Graduate School of Life Sciences, 2-1-1 Katahira, Sendai 980-8577, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1365-2958.2006.05197.xDOI Listing
June 2006

Growth inhibition by metabolites of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.

Biosci Biotechnol Biochem 2006 Apr;70(4):1029-32

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://www.tandfonline.com/doi/full/10.1271/bbb.70.1029
Publisher Site
http://dx.doi.org/10.1271/bbb.70.1029DOI Listing
April 2006

Distribution of gamma-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26.

FEMS Microbiol Lett 2006 Mar;256(1):112-8

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1574-6968.2005.00096.xDOI Listing
March 2006

Functional analysis of unique class II insertion sequence IS1071.

Appl Environ Microbiol 2006 Jan;72(1):291-7

Department of Biological Sciences, 222 Life Sciences North, University of Idaho, Moscow, ID 83844-3051, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.72.1.291-297.2006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1352228PMC
January 2006

Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains.

Biotechnol Lett 2005 Dec;27(23-24):1847-53

Biotechnology Research Center, The University of Tokyo, 1-1-1 Yayoi, 113-8657, Bunkyo-ku, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s10529-005-3892-1
Publisher Site
http://dx.doi.org/10.1007/s10529-005-3892-1DOI Listing
December 2005

[Functional evolution of bacteria in degradation of environmental pollutants].

Tanpakushitsu Kakusan Koso 2005 Oct;50(12):1505-9

View Article

Download full-text PDF

Source
October 2005