Masafumi Nozawa

Masafumi Nozawa

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Masafumi Nozawa

Masafumi Nozawa

Publications by authors named "Masafumi Nozawa"

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33Publications

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Elucidating the functional evolution of heat sensors among Xenopus species adapted to different thermal niches by ancestral sequence reconstruction.

Mol Ecol 2019 Aug 2;28(15):3561-3571. Epub 2019 Aug 2.

Division of Cell Signaling, National Institute for Physiological Sciences, National Institutes of Natural Sciences, Okazaki, Japan.

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http://dx.doi.org/10.1111/mec.15170DOI Listing
August 2019

Transcriptomic changes with increasing algal symbiont reveal the detailed process underlying establishment of coral-algal symbiosis.

Sci Rep 2018 11 14;8(1):16802. Epub 2018 Nov 14.

Center for Information Biology, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka, 411-8540, Japan.

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http://www.nature.com/articles/s41598-018-34575-5
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http://dx.doi.org/10.1038/s41598-018-34575-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6235891PMC
November 2018

Molecular phylogeny of ten intertidal hermit crabs of the genus Pagurus inferred from multiple mitochondrial genes, with special emphasis on the evolutionary relationship of Pagurus lanuginosus and Pagurus maculosus.

Genetica 2018 Oct 10;146(4-5):369-381. Epub 2018 Jul 10.

Laboratory for DNA Data Analysis, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka, 411-8540, Japan.

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http://dx.doi.org/10.1007/s10709-018-0029-8DOI Listing
October 2018

Gene-by-Gene or Localized Dosage Compensation on the Neo-X Chromosome in Drosophila miranda.

Genome Biol Evol 2018 08;10(8):1875-1881

King Abdullah University of Science and Technology (KAUST), Biological and Environmental Science and Engineering, Computational Bioscience Research Center, Thuwal, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1093/gbe/evy148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071650PMC
August 2018

Evolutionary history of the extant amphioxus lineage with shallow-branching diversification.

Sci Rep 2017 04 25;7(1):1157. Epub 2017 Apr 25.

Department of Biological Science, Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-hiroshima, Hiroshima, 739-8526, Japan.

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http://www.nature.com/articles/s41598-017-00786-5
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http://dx.doi.org/10.1038/s41598-017-00786-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430900PMC
April 2017

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

Insect Biochem Mol Biol 2017 03 20;82:11-20. Epub 2017 Jan 20.

Department of Agricultural and Environmental Biology, The University of Tokyo, Tokyo, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.ibmb.2017.01.006DOI Listing
March 2017

Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda.

Nat Commun 2016 11 29;7:13659. Epub 2016 Nov 29.

Center for Information Biology, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1038/ncomms13659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5141340PMC
November 2016

Two-step evolution of endosymbiosis between hydra and algae.

Mol Phylogenet Evol 2016 10 9;103:19-25. Epub 2016 Jul 9.

King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center, Thuwal 23955-6900, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2016.07.010DOI Listing
October 2016

Different Endosymbiotic Interactions in Two Hydra Species Reflect the Evolutionary History of Endosymbiosis.

Genome Biol Evol 2016 08 3;8(7):2155-63. Epub 2016 Aug 3.

King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center, Thuwal, Kingdom of Saudi Arabia

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http://dx.doi.org/10.1093/gbe/evw142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987108PMC
August 2016

Evolutionary Transitions of MicroRNA-Target Pairs.

Genome Biol Evol 2016 06 4;8(5):1621-33. Epub 2016 Jun 4.

Center for Information Biology, National Institute of Genetics, Shizuoka, Japan King Abdullah University of Science and Technology, Computational Bioscience Research Center, Biological and Environmental Science and Engineering, Thuwal, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1093/gbe/evw092DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898806PMC
June 2016

Microsatellite marker development by multiplex ion torrent PGM sequencing: a case study of the endangered Odorrana narina complex of frogs.

J Hered 2015 Jan-Feb;106(1):131-7. Epub 2014 Nov 25.

From the Institute for Amphibian Biology, Graduate School of Science, Hiroshima University, Higashi-Hiroshima, Hiroshima 739-8526, Japan (Igawa, Komaki, and Sumida); the Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka, Japan (Nozawa); the Department of Genetics, The Graduate University of Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan (Nozawa); the Department of Health Sciences, Hiroshima Prefectural University, Hiroshima, Japan (Nagaoka and Fujii); and the Section of Agriculture and Forest, Amami City Government, Amami, Kagoshima, Japan (Oumi). Takeshi Igawa is now at the Division of Development Science, Department of Developmental Science, Graduate School of International Development and Cooperation, Hiroshima University, Higashi-Hiroshima 739-8529, Japan.

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http://jhered.oxfordjournals.org/content/early/2014/11/24/jh
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http://jhered.oxfordjournals.org/cgi/doi/10.1093/jhered/esu0
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http://dx.doi.org/10.1093/jhered/esu071DOI Listing
July 2015

Development and characterization of 14 microsatellite markers for Buergeria japonica (Amphibia, Anura, Rhacophoridae).

Genes Genet Syst 2014 ;89(1):35-9

Institute for Amphibian Biology, Graduate School of Science, Hiroshima University.

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http://dx.doi.org/10.1266/ggs.89.35DOI Listing
December 2014

Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura.

Mol Biol Evol 2014 Mar 3;31(3):614-24. Epub 2013 Dec 3.

Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka, Japan.

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http://dx.doi.org/10.1093/molbev/mst239DOI Listing
March 2014

Origins and evolution of microRNA genes in plant species.

Genome Biol Evol 2012 4;4(3):230-9. Epub 2012 Jan 4.

Department of Biology, Institute of Molecular Evolutionary Genetics, Pennsylvania State University, PA, USA.

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http://dx.doi.org/10.1093/gbe/evs002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3318440PMC
July 2012

Roles of mutation and selection in speciation: from Hugo de Vries to the modern genomic era.

Genome Biol Evol 2011 ;3:812-29

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University.

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http://dx.doi.org/10.1093/gbe/evr028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227404PMC
December 2011

Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species.

Genome Biol Evol 2011 27;3:129-39. Epub 2010 Dec 27.

Institute of Molecular Evolutionary Genetics, Department of Biology, Pennsylvania State University, USA.

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https://academic.oup.com/gbe/article/doi/10.1093/gbe/evq088/
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http://dx.doi.org/10.1093/gbe/evq088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041157PMC
May 2011

The neutral theory of molecular evolution in the genomic era.

Annu Rev Genomics Hum Genet 2010 ;11:265-89

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1146/annurev-genom-082908-150129DOI Listing
September 2010

Origins and evolution of microRNA genes in Drosophila species.

Genome Biol Evol 2010 Jul 12;2:180-9. Epub 2010 Jul 12.

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, University Park, USA.

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http://dx.doi.org/10.1093/gbe/evq009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2942034PMC
July 2010

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods.

Proc Natl Acad Sci U S A 2009 Apr 1;106(16):6700-5. Epub 2009 Apr 1.

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, USA.

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http://dx.doi.org/10.1073/pnas.0901855106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2672471PMC
April 2009

The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity.

Nat Rev Genet 2008 Dec;9(12):951-63

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, 328 Mueller Laboratory, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1038/nrg2480DOI Listing
December 2008

Evolutionary dynamics of the immunoglobulin heavy chain variable region genes in vertebrates.

Immunogenetics 2008 Jan 10;60(1):47-55. Epub 2008 Jan 10.

Department of Biology, Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1007/s00251-007-0270-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386433PMC
January 2008

Genomic drift and copy number variation of sensory receptor genes in humans.

Proc Natl Acad Sci U S A 2007 Dec 5;104(51):20421-6. Epub 2007 Dec 5.

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, 328 Mueller Laboratory, University Park, PA 16802, USA.

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http://dx.doi.org/10.1073/pnas.0709956104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2154446PMC
December 2007

Evolutionary dynamics of olfactory receptor genes in Drosophila species.

Proc Natl Acad Sci U S A 2007 Apr 16;104(17):7122-7. Epub 2007 Apr 16.

Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University, 328 Mueller Laboratory, University Park, PA 16802, USA.

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http://dx.doi.org/10.1073/pnas.0702133104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855360PMC
April 2007

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Unusual evolution of interspersed repeat sequences in the Drosophila ananassae subgroup.

Mol Biol Evol 2006 May 8;23(5):981-7. Epub 2006 Feb 8.

Department of Biological Sciences, Graduate School of Science, Tokyo Metropolitan University, Tokyo, Japan.

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http://dx.doi.org/10.1093/molbev/msj105DOI Listing
May 2006

A novel chimeric gene, siren, with retroposed promoter sequence in the Drosophila bipectinata complex.

Genetics 2005 Dec 2;171(4):1719-27. Epub 2005 Sep 2.

Department of Biological Sciences, Graduate School of Science, Tokyo Metropolitan University, 1-1 Minami-ohsawa, Hachioji-shi, Tokyo 192-0397, Japan.

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http://dx.doi.org/10.1534/genetics.105.041699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456098PMC
December 2005

Comparative sequence analysis of a gene-dense region among closely related species of Drosophila melanogaster.

Genes Genet Syst 2004 Dec;79(6):351-9

Department of Biological Sciences, Tokyo Metropolitan University, 1-1 Minami-osawa, Hachioji-shi, Tokyo 192-0397, Japan.

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http://dx.doi.org/10.1266/ggs.79.351DOI Listing
December 2004