Maryann E Martone

Maryann E Martone

UNVERIFIED PROFILE

Are you Maryann E Martone?   Register this Author

Register author
Maryann E Martone

Maryann E Martone

Publications by authors named "Maryann E Martone"

Are you Maryann E Martone?   Register this Author

72Publications

1040Reads

36Profile Views

FAIR SCI Ahead: the evolution of the Open Data Commons for preclinical spinal cord injury research (ODC-SCI.org).

J Neurotrauma 2019 Oct 14. Epub 2019 Oct 14.

University of California San Francisco, 8785, Brain and Spinal Injury Center, Dept Neurosurgery, San Francisco, California, United States;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/neu.2019.6674DOI Listing
October 2019

Data sharing in psychology.

Am Psychol 2018 Feb-Mar;73(2):111-125

American Psychological Association.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1037/amp0000242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5920518PMC
April 2019

Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines.

Elife 2019 Jan 29;8. Epub 2019 Jan 29.

Center for Research in Biological Systems, University of California, San Diego, San Diego, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7554/eLife.41676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6351100PMC
January 2019

The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases.

PLoS One 2015 22;10(9):e0136206. Epub 2015 Sep 22.

Center for Research in Biological Systems, University of California, San Diego, San Diego, California, United States of America; Dept of Neurosciences, University of California, San Diego, San Diego, California, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136206PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578941PMC
June 2016

The Resource Identification Initiative: A Cultural Shift in Publishing.

J Comp Neurol 2016 Jan;524(1):8-22

Oregon Health & Science University (OHSU) Library, Department of Medical Informatics & Clinical Epidemiology, Portland, Oregon, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cne.23913DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684178PMC
January 2016

The Resource Identification Initiative: a cultural shift in publishing.

Brain Behav 2016 01 8;6(1):e00417. Epub 2015 Dec 8.

Department of Medical Informatics & Clinical Epidemiology OHSU Library Oregon Health and Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/brb3.417DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834942PMC
January 2016

Big data from small data: data-sharing in the 'long tail' of neuroscience.

Nat Neurosci 2014 Nov;17(11):1442-7

1] Center for Research in Biological Structure, University of California at San Diego, San Diego, California, USA. [2] Department of Neuroscience, University of California at San Diego, San Diego, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nn.3838DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4728080PMC
November 2014

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments.

J Biomed Semantics 2013 Oct 7;4(1):20. Epub 2013 Oct 7.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-4-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852282PMC
October 2013

Connecting connectomes.

Neuroinformatics 2013 Oct;11(4):389-92

Department of Neuroscience, University of California, San Diego, CA, USA,

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s12021-013-9207-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3858843PMC
October 2013

NeuroLex.org: an online framework for neuroscience knowledge.

Front Neuroinform 2013 30;7:18. Epub 2013 Aug 30.

Department of Neurosciences, University of California San Diego La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fninf.2013.00018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3757470PMC
September 2013

A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.

Int Rev Neurobiol 2012 ;103:39-68

Department of Neurosciences and Center for Research in Biological Systems, University of California, San Diego, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/B978-0-12-388408-4.00003-4DOI Listing
May 2013

A knowledge based approach to matching human neurodegenerative disease and animal models.

Front Neuroinform 2013 14;7. Epub 2013 May 14.

Department of Neurosciences, Center for Research in Biological Systems, University of California San Diego, San Diego, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fninf.2013.00007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3653101PMC
May 2013

A comparative antibody analysis of pannexin1 expression in four rat brain regions reveals varying subcellular localizations.

Front Pharmacol 2013 6;4. Epub 2013 Feb 6.

National Center for Microscopy and Imaging Research, Center for Research in Biological Systems, University of California San Diego, La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fphar.2013.00006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3565217PMC
February 2013

The cell: an image library-CCDB: a curated repository of microscopy data.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D1241-50. Epub 2012 Nov 29.

Center for Research in Biological Systems, Basic Science Building, Room 1000, University of California, San Diego, 9500 Gilman Drive, Department Code 0608, La Jolla, CA 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gks1257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531121PMC
January 2013

An ontological approach to describing neurons and their relationships.

Front Neuroinform 2012 27;6:15. Epub 2012 Apr 27.

Center for Neural Informatics, Structures, & Plasticity and Molecular Neuroscience Department, Krasnow Institute for Advanced Study, George Mason University, Fairfax VA, USA.

View Article

Download full-text PDF

Source
http://journal.frontiersin.org/article/10.3389/fninf.2012.00
Publisher Site
http://dx.doi.org/10.3389/fninf.2012.00015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338117PMC
October 2012

Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.

Front Genet 2012 22;3:111. Epub 2012 Jun 22.

Neuroscience Information Framework, Center for Research in Biological Systems, University of California San Diego La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2012.00111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381282PMC
October 2012

Biological imaging software tools.

Nat Methods 2012 Jun 28;9(7):697-710. Epub 2012 Jun 28.

Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/nmeth.2084
Publisher Site
http://dx.doi.org/10.1038/nmeth.2084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659807PMC
June 2012

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets.

BMC Bioinformatics 2012 Feb 9;13:29. Epub 2012 Feb 9.

Center for Research in Biological Systems, University of California, 9500 Gilman Dr., La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-13-29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3293777PMC
February 2012

A formal ontology of subcellular neuroanatomy.

Front Neuroinform 2007 2;1. Epub 2007 Nov 2.

National Center for Microscopy and Imaging Research, University of California USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/neuro.11.003.2007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2525993PMC
July 2011

Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics.

Front Neuroanat 2011 7;5:17. Epub 2011 Mar 7.

Center for Research in Biological Systems, National Center for Microscopy and Imaging Research, University of California San Diego La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fnana.2011.00017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096995PMC
July 2011

Challenges and opportunities in mining neuroscience data.

Science 2011 Feb;331(6018):708-12

The Molecular and Behavioral Neuroscience Institute, University of Michigan, Ann Arbor, MI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1199305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102049PMC
February 2011

Dimensionality Reduction on Multi-Dimensional Transfer Functions for Multi-Channel Volume Data Sets.

Inf Vis 2010 Sep;9(3):167-180

Department of Computer Science and Engineering, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1057/ivs.2010.6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3153355PMC
September 2010

Multi-Channel Transfer Function with Dimensionality Reduction.

Proc SPIE Int Soc Opt Eng 2010 Jan;7530:75300A

Department of Computer Science and Engineering, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://proceedings.spiedigitallibrary.org/proceeding.aspx?do
Publisher Site
http://dx.doi.org/10.1117/12.839526DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2891081PMC
January 2010

Ontologies for Neuroscience: What are they and What are they Good for?

Front Neurosci 2009 May 1;3(1):60-7. Epub 2009 May 1.

Department of Neurosciences, University of California San Diego, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/neuro.01.007.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2695392PMC
May 2009

Three-dimensional electron microscopy reveals new details of membrane systems for Ca2+ signaling in the heart.

J Cell Sci 2009 Apr;122(Pt 7):1005-13

The Center for Research in Biological Systems, University of California San Diego, La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/jcs.028175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720931PMC
April 2009

Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework.

Neuroinformatics 2008 Sep 25;6(3):229-39. Epub 2008 Oct 25.

Department of Anesthesiology, Center for Medical Informatics, Yale University School of Medicine, P.O. Box 208009, New Haven, CT, 06520-8009, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s12021-008-9035-9
Publisher Site
http://dx.doi.org/10.1007/s12021-008-9035-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664632PMC
September 2008

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Neuroinformatics 2008 Sep 31;6(3):175-94. Epub 2008 Oct 31.

Center for Research in Biological Systems, University of California, San Diego, San Diego, CA 92093-0446, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s12021-008-9032-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2743139PMC
September 2008

The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers.

Neuroinformatics 2008 Sep 31;6(3):219-27. Epub 2008 Oct 31.

Department of Anesthesiology, Center for Medical Informatics, Yale University School of Medicine, New Haven, CT, 06520-8009, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s12021-008-9025-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704600PMC
September 2008

The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications.

J Struct Biol 2008 Mar 14;161(3):359-71. Epub 2007 Sep 14.

National Center for Microscopy and Imaging Research, Department of Neurosciences, University of California, San Diego, 1070 Basic Science Building MC 0608, 9500 Gilman Drive, La Jolla, CA 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jsb.2007.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459253PMC
March 2008

The cell centered database project: an update on building community resources for managing and sharing 3D imaging data.

J Struct Biol 2008 Mar 16;161(3):220-31. Epub 2007 Oct 16.

Department of Neurosciences, University of California at San Diego, San Diego, CA 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jsb.2007.10.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367257PMC
March 2008

Light and electron microscopic localization of multiple proteins using quantum dots.

Methods Mol Biol 2007 ;374:43-53

Department of Neurosciences, The National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1385/1-59745-369-2:43DOI Listing
December 2007

Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain.

J Comp Neurol 2007 Jun;502(6):953-72

Department of Physiology and Neuroscience, New York University School of Medicine, New York, New York 10016, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cne.21353DOI Listing
June 2007

Synapse formation on neurons born in the adult hippocampus.

Nat Neurosci 2007 Jun 7;10(6):727-34. Epub 2007 May 7.

Laboratory of Genetics, the Salk Institute for Biological Studies, 10010 N. Torrey Pines Road, La Jolla, California 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nn1908DOI Listing
June 2007

Database resources for cellular electron microscopy.

Methods Cell Biol 2007 ;79:799-822

National Center for Microscopy and Imaging Research, Center for Research in Biological Systems, University of California, San Diego, La Jolla, California 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S0091-679X(06)79031-8DOI Listing
April 2007

High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders.

Neuroinformatics 2006 ;4(1):65-80

National Center for Microscopy and Imaging Research, Center for Research in Biological Systems, Department of Neurosciences, University of California, San Diego, CA 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1385/NI:4:1:65DOI Listing
May 2006

Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease.

Stud Health Technol Inform 2005 ;112:100-9

BIRN Coordinating Center at the University of California San Diego, Center for Research on Biological Structure, La Jolla, CA 92093-0715, USA.

View Article

Download full-text PDF

Source
July 2005

Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement.

J Struct Biol 2004 Dec;148(3):297-306

National Center for Microscopy and Imaging Research, Center for Research in Biological Systems, University of California at San Diego, La Jolla, CA 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jsb.2004.08.005DOI Listing
December 2004

Potassium channel subunit Kv3.2 and the water channel aquaporin-4 are selectively localized to cerebellar pinceau.

Brain Res 2004 Nov;1026(2):168-78

Department of Neurosciences, National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA 92093-0608, USA.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S000689930401251
Publisher Site
http://dx.doi.org/10.1016/j.brainres.2004.07.088DOI Listing
November 2004

Protein ubiquitination in postsynaptic densities after transient cerebral ischemia.

J Cereb Blood Flow Metab 2004 Nov;24(11):1219-25

Department of Neurology, University of Miami School of Medicine, Miami, Florida 33136, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/01.WCB.0000136706.77918.21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3518068PMC
November 2004

E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains.

Nat Neurosci 2004 May;7(5):467-72

Department of Neurosciences, National Center for Microscopy and Imaging Research and The Center for Research in Biological Systems, The University of California San Diego, La Jolla, California 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nn1229DOI Listing
May 2004

Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development.

Int J Dev Neurosci 2004 Apr;22(2):73-86

Biomedical Sciences Program, University of California, San Diego, La Jolla 92093-0608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijdevneu.2003.12.008DOI Listing
April 2004

Towards a formalization of disease-specific ontologies for neuroinformatics.

Neural Netw 2003 Nov;16(9):1277-92

San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0505, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.neunet.2003.07.008DOI Listing
November 2003

ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains.

Dev Cell 2003 Oct;5(4):583-94

Department of Cell Biology and Oncology, Istituto di Ricerche Farmacologiche Mario Negri, Consorzio Mario Negri Sud, 66030 Santa Maria Imbaro, (Chieti), Italy.

View Article

Download full-text PDF

Source
October 2003

A cell-centered database for electron tomographic data.

J Struct Biol 2002 Apr-May;138(1-2):145-55

National Center for Microscopy and Imaging Research, Center for Research in Biological Structure and Department of Neurosciences, University of California, San Diego, La Jolla, 92093-0608, USA.

View Article

Download full-text PDF

Source
http://www.sdsc.edu/~ludaesch/Paper/cell-centered-db.pdf
Web Search
July 2003

Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus.

J Comp Neurol 2003 Jul;462(2):241-51

National Center for Microscopy and Imaging Research, University of California- San Diego, La Jolla, California 92093, USA.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/cne.10728
Publisher Site
http://dx.doi.org/10.1002/cne.10728DOI Listing
July 2003

Disruption of dendritic translation of CaMKIIalpha impairs stabilization of synaptic plasticity and memory consolidation.

Neuron 2002 Oct;36(3):507-19

Department of Cell Biology and Institute for Childhood and Neglected Diseases, The Scripps Research Institute, 10550 North Torrey Pines Road, ICND 202, La Jolla, CA 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0896-6273(02)00978-9DOI Listing
October 2002

Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains.

J Neurosci 2002 Jan;22(1):183-92

National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, California 92093-0608, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6757596PMC
January 2002

Apoptosis and oncosis in the early progression of left ventricular dysfunction in the cardiomyopathic hamster.

Basic Res Cardiol 2002 Jan;97(1):65-75

Shimonoseki Kosei Hospital, Department of Cardiology, Yamaguchi, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s395-002-8389-4DOI Listing
January 2002