Martin S Taylor

Martin S Taylor

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Perineural Invasion Is a Prognostic but not a Predictive Factor in Nonmetastatic Colon Cancer.

Dis Colon Rectum 2019 10;62(10):1212-1221

Department of General and Gastrointestinal Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1097/DCR.0000000000001450DOI Listing
October 2019

Spindle cell liposarcoma with a TRIO-TERT fusion transcript.

Virchows Arch 2019 Sep 22;475(3):391-394. Epub 2019 Feb 22.

Massachusetts General Hospital, Department of Pathology, Harvard Medical School, Warren 2, 55 Fruit Street, Boston, MA, 02214, USA.

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http://dx.doi.org/10.1007/s00428-019-02545-5DOI Listing
September 2019

To the editor in reply to Dr. Crow's letter.

Arthritis Rheumatol 2019 Sep 12. Epub 2019 Sep 12.

Massachusetts General Hospital, Pathology Boston, Massachusetts, USA.

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http://dx.doi.org/10.1002/art.41104DOI Listing
September 2019

EWSR1/FUS-NFATc2 rearranged round cell sarcoma: clinicopathological series of 4 cases and literature review.

Hum Pathol 2019 Aug 9;90:45-53. Epub 2019 May 9.

Department of Pathology and Laboratory Medicine, Miller School of Medicine, University of Miami, Miami, FL. Electronic address:

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http://dx.doi.org/10.1016/j.humpath.2019.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6714048PMC
August 2019

High prevalence and disease correlation of autoantibodies against p40 encoded by long interspersed nuclear elements (LINE-1) in systemic lupus erythematosus.

Arthritis Rheumatol 2019 Jul 24. Epub 2019 Jul 24.

Division of Rheumatology, Department of Medicine, University of Washington, 750 Republican Street, Room E507, Seattle, WA, 99108.

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http://dx.doi.org/10.1002/art.41054DOI Listing
July 2019

Impact of intramural and extramural vascular invasion on stage II-III colon cancer outcomes.

J Surg Oncol 2019 May 15;119(6):749-757. Epub 2019 Jan 15.

Department of General and Gastrointestinal Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1002/jso.25367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6629581PMC
May 2019

Identification of RNase-sensitive LINE-1 Ribonucleoprotein Interactions by Differential Affinity Immobilization.

Bio Protoc 2019 Apr;9(7)

Laboratory of Cellular and Structural Biology, The Rockefeller University, New York, USA.

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http://dx.doi.org/10.21769/BioProtoc.3200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6519465PMC
April 2019

A Conserved Distal Lung Regenerative Pathway in Acute Lung Injury.

Am J Pathol 2018 05 21;188(5):1149-1160. Epub 2018 Feb 21.

Department of Pathology, Massachusetts General Hospital, Boston, Massachusetts; Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Massachusetts General Hospital, Boston, Massachusetts. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00029440173066
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http://dx.doi.org/10.1016/j.ajpath.2018.01.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5906746PMC
May 2018

Bidirectional transcription initiation marks accessible chromatin and is not specific to enhancers.

Genome Biol 2017 12 28;18(1):242. Epub 2017 Dec 28.

MRC Human Genetics Unit, MRC Institute of Genetics & Molecular Medicine, University of Edinburgh, Crewe Road South, Edinburgh, EH4 2XU, UK.

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http://dx.doi.org/10.1186/s13059-017-1379-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747114PMC
December 2017

The Human Long Interspersed Element-1 Retrotransposon: An Emerging Biomarker of Neoplasia.

Clin Chem 2017 04 10;63(4):816-822. Epub 2017 Feb 10.

McKusick-Nathans Institute of Genetic Medicine (IGM) and

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http://dx.doi.org/10.1373/clinchem.2016.257444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6177209PMC
April 2017

Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.

Methods Mol Biol 2016 ;1400:261-80

Department of Pathology, Johns Hopkins University School of Medicine, 733 N. Broadway, MRB 469, Baltimore, MD, 21205, USA.

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http://dx.doi.org/10.1007/978-1-4939-3372-3_17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679191PMC
December 2016

Characterization of L1-Ribonucleoprotein Particles.

Methods Mol Biol 2016 ;1400:311-38

Department of Biochemistry and Molecular Pharmacology and Institute for Systems Genetics, New York University Langone School of Medicine, 550 First Avenue, New York, NY, 10016, USA.

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http://dx.doi.org/10.1007/978-1-4939-3372-3_20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5084692PMC
December 2016

Mutational Biases Drive Elevated Rates of Substitution at Regulatory Sites across Cancer Types.

PLoS Genet 2016 08 4;12(8):e1006207. Epub 2016 Aug 4.

MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1006207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973979PMC
August 2016

Meeting Report: The Role of the Mobilome in Cancer.

Cancer Res 2016 08 18;76(15):4316-9. Epub 2016 Jul 18.

Division of Cancer Biology, NCI, NIH, Rockville, Maryland.

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http://dx.doi.org/10.1158/0008-5472.CAN-15-3421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991632PMC
August 2016

The frequent evolutionary birth and death of functional promoters in mouse and human.

Genome Res 2015 Oct 30;25(10):1546-57. Epub 2015 Jul 30.

MRC Human Genetics Unit, MRC Institute for Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom;

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http://dx.doi.org/10.1101/gr.190546.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4579340PMC
October 2015

Mechanistic analysis of ghrelin-O-acyltransferase using substrate analogs.

Bioorg Chem 2015 Oct 13;62:64-73. Epub 2015 Jul 13.

Department of Pharmacology & Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bioorg.2015.07.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567917PMC
October 2015

Genome-wide mapping of embedded ribonucleotides and other noncanonical nucleotides using emRiboSeq and EndoSeq.

Nat Protoc 2015 Sep 27;10(9):1433-44. Epub 2015 Aug 27.

Medical Research Council (MRC) Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, The University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1038/nprot.2015.099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876909PMC
September 2015

Affinity proteomics to study endogenous protein complexes: pointers, pitfalls, preferences and perspectives.

Biotechniques 2015 Mar 1;58(3):103-19. Epub 2015 Mar 1.

Laboratory of Cellular and Structural Biology, The Rockefeller University, New York.

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http://dx.doi.org/10.2144/000114262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4465938PMC
March 2015

Lagging-strand replication shapes the mutational landscape of the genome.

Nature 2015 Feb 26;518(7540):502-506. Epub 2015 Jan 26.

MRC Human Genetics Unit, MRC Institute for Genetics and Molecular Medicine, University of Edinburgh, UK.

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http://dx.doi.org/10.1038/nature14183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4374164PMC
February 2015

SuRFing the genomics wave: an R package for prioritising SNPs by functionality.

Genome Med 2014 14;6(10):79. Epub 2014 Oct 14.

Centre for Genomic and Experimental Medicine, Institute of Genetics and Molecular Medicine, The University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh, EH4 2XU UK ; Centre for Cognitive Ageing and Cognitive Epidemiology, The University of Edinburgh, 7 George Square, Edinburgh, EH8 9JZ UK.

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http://dx.doi.org/10.1186/s13073-014-0079-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224693PMC
November 2014

Genetic heterogeneity in Cornelia de Lange syndrome (CdLS) and CdLS-like phenotypes with observed and predicted levels of mosaicism.

J Med Genet 2014 Oct 14;51(10):659-68. Epub 2014 Aug 14.

MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1136/jmedgenet-2014-102573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4173748PMC
October 2014

Variant detection sensitivity and biases in whole genome and exome sequencing.

BMC Bioinformatics 2014 Jul 19;15:247. Epub 2014 Jul 19.

MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Crewe Road, EH4 2XU Edinburgh, UK.

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http://dx.doi.org/10.1186/1471-2105-15-247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4122774PMC
July 2014

A selective phenelzine analogue inhibitor of histone demethylase LSD1.

ACS Chem Biol 2014 Jun 7;9(6):1284-93. Epub 2014 Apr 7.

Department of Pharmacology, ∥Center for Epigenetics and Department of Medicine, ⊥Department of Ophthalmology, and ¶The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Johns Hopkins University School of Medicine , Baltimore, Maryland 21205, United States.

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http://pubs.acs.org/doi/10.1021/cb500018s
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http://dx.doi.org/10.1021/cb500018sDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076021PMC
June 2014

Long interspersed element-1 protein expression is a hallmark of many human cancers.

Am J Pathol 2014 May 6;184(5):1280-6. Epub 2014 Mar 6.

Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland; High Throughput Biology Center, Johns Hopkins University School of Medicine, Baltimore, Maryland; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland. Electronic address:

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http://dx.doi.org/10.1016/j.ajpath.2014.01.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4005969PMC
May 2014

Expression and detection of LINE-1 ORF-encoded proteins.

Mob Genet Elements 2014 22;4:e29319. Epub 2014 May 22.

Institute for Systems Genetics; New York University School of Medicine; New York, NY USA.

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http://dx.doi.org/10.4161/mge.29319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091050PMC
May 2014

An Fc domain protein-small molecule conjugate as an enhanced immunomodulator.

J Am Chem Soc 2014 Mar 24;136(9):3370-3. Epub 2014 Feb 24.

Department of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine , Baltimore, Maryland 21205, United States.

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http://dx.doi.org/10.1021/ja5006674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3954559PMC
March 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Heterozygous loss-of-function mutations in YAP1 cause both isolated and syndromic optic fissure closure defects.

Am J Hum Genet 2014 Feb 23;94(2):295-302. Epub 2014 Jan 23.

Medical Research Council Human Genetics Unit, Medical Research Council Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928658PMC
February 2014

Protein WISDOM: a workbench for in silico de novo design of biomolecules.

J Vis Exp 2013 Jul 25(77). Epub 2013 Jul 25.

Department of Chemical and Biological Engineering, Princeton University, USA.

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http://dx.doi.org/10.3791/50476DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3846368PMC
July 2013

Evolution of the human-specific microRNA miR-941.

Nat Commun 2012 ;3:1145

CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, 320 Yue Yang Road, Shanghai 200031, China.

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http://dx.doi.org/10.1038/ncomms2146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3493648PMC
June 2013

Quantifying single nucleotide variant detection sensitivity in exome sequencing.

BMC Bioinformatics 2013 Jun 18;14:195. Epub 2013 Jun 18.

MRC Human Genetics Unit, MRC Institute for Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh, UK.

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http://dx.doi.org/10.1186/1471-2105-14-195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3695811PMC
June 2013

Ghrelin O-acyltransferase assays and inhibition.

Methods Enzymol 2012 ;514:205-28

Department of Pharmacology & Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.

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https://linkinghub.elsevier.com/retrieve/pii/B97801238127280
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http://dx.doi.org/10.1016/B978-0-12-381272-8.00013-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3763810PMC
February 2013

Application of next generation qPCR and sequencing platforms to mRNA biomarker analysis.

Methods 2013 Jan 24;59(1):89-100. Epub 2012 Jul 24.

Molecular and Cell Biology, LGC Limited, Queens Road, Teddington, Middlesex TW11 0LY, UK.

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http://dx.doi.org/10.1016/j.ymeth.2012.07.021DOI Listing
January 2013

Poly(A) binding protein C1 is essential for efficient L1 retrotransposition and affects L1 RNP formation.

Mol Cell Biol 2012 Nov 20;32(21):4323-36. Epub 2012 Aug 20.

High Throughput Biology Center, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.

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http://mcb.asm.org/cgi/doi/10.1128/MCB.06785-11
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http://dx.doi.org/10.1128/MCB.06785-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486150PMC
November 2012

The (non)malignancy of cancerous amino acidic substitutions.

Proteins 2010 Feb;78(3):518-29

EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.

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http://doi.wiley.com/10.1002/prot.22574
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http://dx.doi.org/10.1002/prot.22574DOI Listing
February 2010

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

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http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

Molecular biology. The structure of change.

Science 2009 Jan;323(5912):347-8

MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Edinburgh EH4 2XU, UK.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1169408
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http://dx.doi.org/10.1126/science.1169408DOI Listing
January 2009

Expression of the fras1/frem gene family during zebrafish development and fin morphogenesis.

Dev Dyn 2008 Nov;237(11):3295-304

Comparative and Developmental Genetics Section, MRC Human Genetics Unit, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1002/dvdy.21729DOI Listing
November 2008

Rapidly evolving human promoter regions.

Nat Genet 2008 Nov;40(11):1262-3; author reply 1263-4

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http://dx.doi.org/10.1038/ng1108-1262DOI Listing
November 2008

Singleton SNPs in the human genome and implications for genome-wide association studies.

Eur J Hum Genet 2008 Apr 16;16(4):506-15. Epub 2008 Jan 16.

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.

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http://bioinfo.ut.ee/JC/2007-2008/Reedik_Magi.pdf
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http://www.nature.com/doifinder/10.1038/sj.ejhg.5201987
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http://dx.doi.org/10.1038/sj.ejhg.5201987DOI Listing
April 2008

Toward full-sequence de novo protein design with flexible templates for human beta-defensin-2.

Biophys J 2008 Jan 7;94(2):584-99. Epub 2007 Sep 7.

Department of Chemical Engineering, Princeton University, Princeton, New Jersey, USA.

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http://dx.doi.org/10.1529/biophysj.107.110627DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2157230PMC
January 2008

Problems of developing molecular diagnostic tests for opportunistic pathogens: the example of Pneumocystis jirovecii.

J Eukaryot Microbiol 2006 ;53 Suppl 1:S85-6

Centre for Infectious Diseases & International Health, University College London, London, United Kingdom.

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http://dx.doi.org/10.1111/j.1550-7408.2006.00182.xDOI Listing
October 2007

Genome-wide genetic association of complex traits in heterogeneous stock mice.

Nat Genet 2006 Aug 9;38(8):879-87. Epub 2006 Jul 9.

Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK.

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http://dx.doi.org/10.1038/ng1840DOI Listing
August 2006

Heterotachy in mammalian promoter evolution.

PLoS Genet 2006 Apr 28;2(4):e30. Epub 2006 Apr 28.

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.0020030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1449885PMC
April 2006

The extracellular matrix gene Frem1 is essential for the normal adhesion of the embryonic epidermis.

Proc Natl Acad Sci U S A 2004 Sep 2;101(37):13560-5. Epub 2004 Sep 2.

Medical Research Council Human Genetics Unit, Crewe Road, Edinburgh EH4 2XU, Scotland, United Kingdom.

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http://dx.doi.org/10.1073/pnas.0402760101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC518794PMC
September 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.

Genome Res 2004 Apr;14(4):555-66

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.

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http://dx.doi.org/10.1101/gr.1977804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383299PMC
April 2004

Sequence characterization of teleost fish melanocortin receptors.

Ann N Y Acad Sci 2003 Jun;994:319-30

MRC Human Genetics Unit, Western General Hospital, Crewe Road, Edinburgh EH4 2XU, United Kingdom.

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http://dx.doi.org/10.1111/j.1749-6632.2003.tb03196.xDOI Listing
June 2003

Interaction of the anaphase-promoting complex/cyclosome and proteasome protein complexes with multiubiquitin chain-binding proteins.

J Biol Chem 2003 May 3;278(19):16791-6. Epub 2003 Mar 3.

Medical Research Council Human Genetics Unit, Western General Hospital, Crewe Road, Edinburgh EH4 2XU, United Kingdom.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M208281200
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http://dx.doi.org/10.1074/jbc.M208281200DOI Listing
May 2003

The structure and evolution of the melanocortin and MCH receptors in fish and mammals.

Genomics 2003 Feb;81(2):184-91

MRC Human Genetics Unit, Western General Hospital, Edinburgh, EH4 2XU, UK.

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http://dx.doi.org/10.1016/s0888-7543(02)00037-xDOI Listing
February 2003

Evolutionary constraints on the Disrupted in Schizophrenia locus.

Genomics 2003 Jan;81(1):67-77

Medical Genetics Section, Molecular Medicine Centre, University of Edinburgh, Crewe Road, Edinburgh EH4 2XU, UK.

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http://dx.doi.org/10.1016/s0888-7543(02)00026-5DOI Listing
January 2003

Sushi gets serious: the draft genome sequence of the pufferfish Fugu rubripes.

Genome Biol 2002 Aug 28;3(9):reviews1025. Epub 2002 Aug 28.

MRC Human Genetics Unit, Western General Hospital, Edinburgh, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC139409PMC
http://dx.doi.org/10.1186/gb-2002-3-9-reviews1025DOI Listing
August 2002