Publications by authors named "Martin Morgan"

70Publications

Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data.

JCO Clin Cancer Inform 2020 04;4:321-335

Novartis Institutes for BioMedical Research, Cambridge, MA.

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http://dx.doi.org/10.1200/CCI.19.00130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7259876PMC
April 2020

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

PLoS Comput Biol 2020 02 25;16(2):e1007664. Epub 2020 Feb 25.

Department of Computer Science, University of Maryland, College Park, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1007664DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059966PMC
February 2020

Toward a gold standard for benchmarking gene set enrichment analysis.

Brief Bioinform 2020 Feb 6. Epub 2020 Feb 6.

Graduate School of Public Health and Health Policy, City University of New York, New York, NY 10027, USA.

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http://dx.doi.org/10.1093/bib/bbz158DOI Listing
February 2020

Stop the Bleed Training: Rescuer Skills, Knowledge, and Attitudes of Hemorrhage Control Techniques.

J Surg Res 2020 01 13;245:636-642. Epub 2019 Sep 13.

Section of Emergency Medicine, Louisiana State University School of Medicine, New Orleans, Louisiana.

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http://dx.doi.org/10.1016/j.jss.2019.08.011DOI Listing
January 2020

BiocPkgTools: Toolkit for mining the package ecosystem.

F1000Res 2019 29;8:752. Epub 2019 May 29.

Center for Cancer Reasearch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.12688/f1000research.19410.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6584971PMC
June 2020

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor.

F1000Res 2019 7;8:21. Epub 2019 Jan 7.

Channing Division of Network Medicine, Harvard Medical School, Boston, Massachusetts, 02115, USA.

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http://dx.doi.org/10.12688/f1000research.17518.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6392152PMC
June 2020

Orchestrating a community-developed computational workshop and accompanying training materials.

F1000Res 2018 17;7:1656. Epub 2018 Oct 17.

Graduate School of Public Health and Health Policy and the Institute for Implementation Science in Population Health, City University of New York, New York, NY, 10027, USA.

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https://f1000research.com/articles/7-1656/v1
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http://dx.doi.org/10.12688/f1000research.16516.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6234736PMC
September 2019

gwasurvivr: an R package for genome-wide survival analysis.

Bioinformatics 2019 06;35(11):1968-1970

Division of Pharmacy Practice and Science, College of Pharmacy, The Ohio State University, Columbus, OH, USA.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/bty920DOI Listing
June 2019

Heaviside's dolphins () relax acoustic crypsis to increase communication range.

Proc Biol Sci 2018 07 18;285(1883). Epub 2018 Jul 18.

Aarhus Institute of Advanced Studies, Aarhus University, 8000 Aarhus C, Denmark.

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http://dx.doi.org/10.1098/rspb.2018.1178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6083265PMC
July 2018

A Survey of Safety Recommendations for All-Terrain Vehicle Dealers and Track Owners in Kansas.

Kans J Med 2017 Nov 30;10(4):1-11. Epub 2017 Nov 30.

University of Kansas School of Medicine-Wichita, Department of Family and Community Medicine, Wichita, KS.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5733398PMC
November 2017

A Comparison of 4 Analgesic Regimens for Acute Postoperative Pain Control in Breast Augmentation Patients.

Ann Plast Surg 2017 Jun;78(6S Suppl 5):S299-S304

From the *Division of Plastic and Reconstructive Surgery, and †Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, LA.

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http://Insights.ovid.com/crossref?an=00000637-201706005-0001
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http://dx.doi.org/10.1097/SAP.0000000000001132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686898PMC
June 2017

Successful Treatment of Recurrent Pulmonary Mucormycosis in a Renal Transplant Patient: A Case Report and Literature Review.

Case Rep Transplant 2017 13;2017:1925070. Epub 2017 Mar 13.

Tulane University School of Medicine, Tulane Abdominal Transplant Institute, New Orleans, LA, USA.

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http://dx.doi.org/10.1155/2017/1925070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5366780PMC
March 2017

Sex versus gender differences in schizophrenia: The case for normal personality differences.

Schizophr Res 2017 11 16;189:57-60. Epub 2017 Feb 16.

Department of Psychological and Brain Sciences, University of Louisville, Belknap Campus, Louisville, KY 40292, USA.

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http://dx.doi.org/10.1016/j.schres.2017.02.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559345PMC
November 2017

Genomic Annotation Resources in R/Bioconductor.

Methods Mol Biol 2016 ;1418:67-90

Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

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http://dx.doi.org/10.1007/978-1-4939-3578-9_4DOI Listing
December 2016

The Bioconductor channel in F1000Research.

F1000Res 2015 10;4:217. Epub 2015 Jul 10.

Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4786899PMC
http://dx.doi.org/10.12688/f1000research.6758.2DOI Listing
May 2016

Scalable Genomics with R and Bioconductor.

Stat Sci 2014 May 18;29(2):214-226. Epub 2014 Aug 18.

Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N., P.O. Box 19024, Seattle, Washington 98109, USA

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http://dx.doi.org/10.1214/14-STS476DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181792PMC
May 2014

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.

Bioinformatics 2014 Jul 28;30(14):2076-8. Epub 2014 Mar 28.

Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 and Department of Biostatistics, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4080743PMC
July 2014

Abstract 48: identification and the effective repair of the athletic hernia.

Plast Reconstr Surg 2014 Mar;133(3 Suppl):58

Univ of Alabama Birmingham, Birmingham, AL.

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http://dx.doi.org/10.1097/01.prs.0000445081.01462.5aDOI Listing
March 2014

Software for computing and annotating genomic ranges.

PLoS Comput Biol 2013 8;9(8):e1003118. Epub 2013 Aug 8.

Bioinformatics and Computational Biology, Genentech, Inc., South San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3738458PMC
February 2014

Combination treatment of CO2 fractional laser, pulsed dye laser, and triamcinolone acetonide injection for refractory keloid scars on the upper back.

J Cosmet Laser Ther 2013 Jun 29;15(3):166-70. Epub 2013 Apr 29.

University of Alabama School of Medicine, Brimingham, AL 35223, USA.

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http://dx.doi.org/10.3109/14764172.2013.780448DOI Listing
June 2013

Gene expression changes in adipose tissue with diet- and/or exercise-induced weight loss.

Cancer Prev Res (Phila) 2013 Mar 22;6(3):217-31. Epub 2013 Jan 22.

National Center for Tumor Diseases (NCT), Division of Preventive Oncology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 460, Heidelberg 69120, Germany.

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http://dx.doi.org/10.1158/1940-6207.CAPR-12-0212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3738189PMC
March 2013

MYC-driven tumorigenesis is inhibited by WRN syndrome gene deficiency.

Mol Cancer Res 2012 Apr 1;10(4):535-45. Epub 2012 Feb 1.

Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1158/1541-7786.MCR-11-0508DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707802PMC
April 2012

Dissociation between the processivity and total activity of γ-secretase: implications for the mechanism of Alzheimer's disease-causing presenilin mutations.

Biochemistry 2011 Oct 30;50(42):9023-35. Epub 2011 Sep 30.

Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, Massachusetts 02115, United States.

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http://dx.doi.org/10.1021/bi2007146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3205908PMC
October 2011

In-cell selectivity profiling of membrane-anchored and replicase-associated hepatitis C virus NS3-4A protease reveals a common, stringent substrate recognition profile.

Biol Chem 2011 Oct 13;392(10):927-35. Epub 2011 Jul 13.

Department of Microbiology and Immunology, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC V6T 1Z3, Canada.

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http://dx.doi.org/10.1515/BC.2011.076DOI Listing
October 2011

Detection and in-cell selectivity profiling of the full-length West Nile virus NS2B/NS3 serine protease using membrane-anchored fluorescent substrates.

Biol Chem 2010 May;391(5):549-59

Department of Microbiology and Immunology, Life Sciences Center, the University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.1515/BC.2010.051DOI Listing
May 2010

Preventing central line-associated bloodstream infections and improving safety culture: a statewide experience.

Jt Comm J Qual Patient Saf 2009 Dec;35(12):593-7

Michigan Health & Hospital Association, Lansing, MI, USA.

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http://dx.doi.org/10.1016/s1553-7250(09)35083-7DOI Listing
December 2009

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.

Bioinformatics 2009 Oct 3;25(19):2607-8. Epub 2009 Aug 3.

Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752612PMC
October 2009

Interspecific seed discounting and the fertility cost of hybridization in an endangered species.

New Phytol 2008 17;177(1):276-83. Epub 2007 Oct 17.

Department of Botany, University of Guelph, Guelph, Ontario N1G 2W1, Canada.

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http://dx.doi.org/10.1111/j.1469-8137.2007.02244.xDOI Listing
March 2008

Recent genetic selection in the ancestral admixture of Puerto Ricans.

Am J Hum Genet 2007 Sep 1;81(3):626-33. Epub 2007 Aug 1.

Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1086/520769DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950843PMC
September 2007

GGtools: analysis of genetics of gene expression in bioconductor.

Bioinformatics 2007 Feb 8;23(4):522-3. Epub 2006 Dec 8.

Channing Laboratory, Brigham and Women's Hospital, 75 Francis Street, Boston 02115, USA.

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http://dx.doi.org/10.1093/bioinformatics/btl628DOI Listing
February 2007

Single-cell resolution imaging of membrane-anchored hepatitis C virus NS3/4A protease activity.

Biol Chem 2006 Aug;387(8):1075-80

Department of Microbiology and Immunology, Life Sciences Centre, University of British Columbia, 3559-2350 Health Sciences Mall, Vancouver, V6T 1Z3, Canada.

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http://dx.doi.org/10.1515/BC.2006.132DOI Listing
August 2006

The antimicrobial peptide polyphemusin localizes to the cytoplasm of Escherichia coli following treatment.

Antimicrob Agents Chemother 2006 Apr;50(4):1522-4

Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada.

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http://dx.doi.org/10.1128/AAC.50.4.1522-1524.2006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1426961PMC
April 2006

The effect of self-fertilization, inbreeding depression, and population size on autopolyploid establishment.

Evolution 2005 Sep;59(9):1867-75

School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236, USA.

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September 2005

Self-fertilization and the escape from pollen limitation in variable pollination environments.

Evolution 2005 May;59(5):1143-8

School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236, USA.

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May 2005

Plant population dynamics, pollinator foraging, and the selection of self-fertilization.

Am Nat 2005 Aug 8;166(2):169-83. Epub 2005 Jun 8.

School of Biological Sciences, Washington State University, Pullman, Washington 99164, USA.

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http://dx.doi.org/10.1086/431317DOI Listing
August 2005

Explaining phenotypic selection on plant attractive characters: male function, gender balance or ecological context?

Proc Biol Sci 2004 Mar;271(1539):553-9

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.

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http://dx.doi.org/10.1098/rspb.2003.2642DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691631PMC
March 2004

Effects of natural rates of geitonogamy on fruit set in Asclepias speciosa (Apocynaceae): evidence favoring the plant's dilemma.

Am J Bot 2003 Dec;90(12):1746-50

School of Biological Sciences, Washington State University, Pullman, WA, 99164-4236.

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http://www.amjbot.org/content/90/12/1746.full.pdf
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http://www.amjbot.org/cgi/doi/10.3732/ajb.90.12.1746
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http://dx.doi.org/10.3732/ajb.90.12.1746DOI Listing
December 2003

Quantitative character evolution under complicated sexual systems, illustrated in gynodioecious Fragaria virginiana.

Am Nat 2003 Aug 16;162(2):257-64. Epub 2003 Jul 16.

1. School of Biological Sciences, Washington State University, Pullman, Washington 99164, USA.

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http://dx.doi.org/10.1086/376581DOI Listing
August 2003

Coevolution in temporally variable environments.

Am Nat 2003 Aug 16;162(2):195-204. Epub 2003 Jun 16.

1. Section of Integrative Biology C0930, University of Texas, Austin, Texas, 78712, USA.

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http://dx.doi.org/10.1086/376582DOI Listing
August 2003

Patterns and mechanisms of selection on a family-diagnostic trait: evidence from experimental manipulation and lifetime fitness selection gradients.

Evolution 2003 Mar;57(3):480-6

Kellogg Biological Station and Department of Plant Biology, Michigan State University, 3700 East Gull Lake Drive, Hickory Corners, Michigan 49060, USA.

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http://dx.doi.org/10.1111/j.0014-3820.2003.tb01539.xDOI Listing
March 2003

ATTRACTIVE STRUCTURES AND THE STABILITY OF HERMAPHRODITIC SEX EXPRESSION IN FLOWERING PLANTS.

Authors:
Martin T Morgan

Evolution 1992 Aug;46(4):1199-1213

Department of Ecology and Evolution, The University of Chicago, 1101 East 57th Street, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1111/j.1558-5646.1992.tb00628.xDOI Listing
August 1992

THE EVOLUTIONARY SIGNIFICANCE OF HYBRIDIZATION IN EUCALYPTUS.

Evolution 1990 Dec;44(8):2150-2151

Department of Ecology and Evolution, University of Chicago, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1111/j.1558-5646.1990.tb04318.xDOI Listing
December 1990

THE DISSOLUTION OF A COMPLEX GENETIC POLYMORPHISM: THE EVOLUTION OF SELF-FERTILIZATION IN TRISTYLOUS EICHHORNIA PANICULATA (PONTEDERIACEAE).

Evolution 1989 Nov;43(7):1398-1416

Department of Botany, University of Toronto, Toronto, ON, M5S 3B2, CANADA.

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http://dx.doi.org/10.1111/j.1558-5646.1989.tb02591.xDOI Listing
November 1989

HISTORICAL FACTORS AND ANISOPLETHIC POPULATION STRUCTURE IN TRISTYLOUS PONTEDERIA CORDATA: A REASSESSMENT.

Evolution 1988 May;42(3):496-504

Department of Botany, University of Toronto, Toronto, ON, M5S 1A1, CANADA.

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http://dx.doi.org/10.1111/j.1558-5646.1988.tb04155.xDOI Listing
May 1988

Time-response studies of the cellular immune response to cell membrane antigens.

Transplantation 1988 Feb;45(2):479-84

Department of Surgery, John Cochran VAMC, St. Louis, Missouri 63106.

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http://dx.doi.org/10.1097/00007890-198802000-00047DOI Listing
February 1988

Recognition of the beta-2 microglobulin-B molecule by a CTL clone.

J Immunol 1987 Jan;138(1):87-90

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January 1987

Allograft rejection-defined antigens of the B2m,H-3 region.

J Immunol 1985 Oct;135(4):2842-6

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October 1985

CTL and serologically defined antigens of B2m,H-3 region.

J Immunol 1985 Oct;135(4):2847-52

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October 1985