Publications by authors named "Martin Kuhlwilm"

21Publications

Maximizing the acquisition of unique reads in noninvasive capture sequencing experiments.

Authors:
Claudia Fontsere Marina Alvarez-Estape Jack Lester Mimi Arandjelovic Martin Kuhlwilm Paula Dieguez Anthony Agbor Samuel Angedakin Emmanuel Ayuk Ayimisin Mattia Bessone Gregory Brazzola Tobias Deschner Manasseh Eno-Nku Anne-Céline Granjon Josephine Head Parag Kadam Ammie K Kalan Mohamed Kambi Kevin Langergraber Juan Lapuente Giovanna Maretti Lucy Jayne Ormsby Alex Piel Martha M Robbins Fiona Stewart Virginie Vergnes Roman M Wittig Hjalmar S Kühl Tomas Marques-Bonet David A Hughes Esther Lizano

Mol Ecol Resour 2020 Nov 20. Epub 2020 Nov 20.

Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, PRBB, Barcelona, Catalonia, Spain.

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November 2020

Author Correction: The dental proteome of Homo antecessor.

Authors:
Frido Welker Jazmín Ramos-Madrigal Petra Gutenbrunner Meaghan Mackie Shivani Tiwary Rosa Rakownikow Jersie-Christensen Cristina Chiva Marc R Dickinson Martin Kuhlwilm Marc de Manuel Pere Gelabert María Martinón-Torres Ann Margvelashvili Juan Luis Arsuaga Eudald Carbonell Tomas Marques-Bonet Kirsty Penkman Eduard Sabidó Jürgen Cox Jesper V Olsen David Lordkipanidze Fernando Racimo Carles Lalueza-Fox José María Bermúdez de Castro Eske Willerslev Enrico Cappellini

Nature 2020 Aug;584(7820):E19

Evolutionary Genomics Section, Globe Institute, University of Copenhagen, Copenhagen, Denmark.

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August 2020

Resurrection of the Ghosts.

Authors:
Martin Kuhlwilm

Bioessays 2020 06 4;42(6):e2000057. Epub 2020 May 4.

Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, 08003, Spain.

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June 2020

The dental proteome of Homo antecessor.

Authors:
Frido Welker Jazmín Ramos-Madrigal Petra Gutenbrunner Meaghan Mackie Shivani Tiwary Rosa Rakownikow Jersie-Christensen Cristina Chiva Marc R Dickinson Martin Kuhlwilm Marc de Manuel Pere Gelabert María Martinón-Torres Ann Margvelashvili Juan Luis Arsuaga Eudald Carbonell Tomas Marques-Bonet Kirsty Penkman Eduard Sabidó Jürgen Cox Jesper V Olsen David Lordkipanidze Fernando Racimo Carles Lalueza-Fox José María Bermúdez de Castro Eske Willerslev Enrico Cappellini

Nature 2020 04 1;580(7802):235-238. Epub 2020 Apr 1.

Evolutionary Genomics Section, Globe Institute, University of Copenhagen, Copenhagen, Denmark.

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April 2020

Enamel proteome shows that Gigantopithecus was an early diverging pongine.

Authors:
Frido Welker Jazmín Ramos-Madrigal Martin Kuhlwilm Wei Liao Petra Gutenbrunner Marc de Manuel Diana Samodova Meaghan Mackie Morten E Allentoft Anne-Marie Bacon Matthew J Collins Jürgen Cox Carles Lalueza-Fox Jesper V Olsen Fabrice Demeter Wei Wang Tomas Marques-Bonet Enrico Cappellini

Nature 2019 12 13;576(7786):262-265. Epub 2019 Nov 13.

Evolutionary Genomics Section, Globe Institute, University of Copenhagen, Copenhagen, Denmark.

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December 2019

Admixture in Mammals and How to Understand Its Functional Implications: On the Abundance of Gene Flow in Mammalian Species, Its Impact on the Genome, and Roads into a Functional Understanding.

Authors:
Claudia Fontsere Marc de Manuel Tomas Marques-Bonet Martin Kuhlwilm

Bioessays 2019 12 30;41(12):e1900123. Epub 2019 Oct 30.

Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Spain.

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December 2019

A catalog of single nucleotide changes distinguishing modern humans from archaic hominins.

Authors:
Martin Kuhlwilm Cedric Boeckx

Sci Rep 2019 06 11;9(1):8463. Epub 2019 Jun 11.

ICREA, Barcelona, Spain.

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June 2019

Author Correction: Ancient admixture from an extinct ape lineage into bonobos.

Authors:
Martin Kuhlwilm Sojung Han Vitor C Sousa Laurent Excoffier Tomas Marques-Bonet

Nat Ecol Evol 2019 Jun;3(6):988

Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Spain.

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June 2019

Ancient admixture from an extinct ape lineage into bonobos.

Authors:
Martin Kuhlwilm Sojung Han Vitor C Sousa Laurent Excoffier Tomas Marques-Bonet

Nat Ecol Evol 2019 06 29;3(6):957-965. Epub 2019 Apr 29.

Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), Parc de Recerca Biomèdica de Barcelona, Barcelona, Spain.

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June 2019

Genetic Variation in Pan Species Is Shaped by Demographic History and Harbors Lineage-Specific Functions.

Authors:
Sojung Han Aida M Andrés Tomas Marques-Bonet Martin Kuhlwilm

Genome Biol Evol 2019 04;11(4):1178-1191

Institut de Biologia Evolutiva, Consejo Superior de Investigaciones Científicas-Universitat Pompeu Fabra, Barcelona, Spain.

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April 2019

The Genomic Footprints of the Fall and Recovery of the Crested Ibis.

Authors:
Shaohong Feng Qi Fang Ross Barnett Cai Li Sojung Han Martin Kuhlwilm Long Zhou Hailin Pan Yuan Deng Guangji Chen Anita Gamauf Friederike Woog Robert Prys-Jones Tomas Marques-Bonet M Thomas P Gilbert Guojie Zhang

Curr Biol 2019 01 10;29(2):340-349.e7. Epub 2019 Jan 10.

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China; China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, China. Electronic address:

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January 2019

Selective single molecule sequencing and assembly of a human Y chromosome of African origin.

Authors:
Lukas F K Kuderna Esther Lizano Eva Julià Jessica Gomez-Garrido Aitor Serres-Armero Martin Kuhlwilm Regina Antoni Alandes Marina Alvarez-Estape David Juan Heath Simon Tyler Alioto Marta Gut Ivo Gut Mikkel Heide Schierup Oscar Fornas Tomas Marques-Bonet

Nat Commun 2019 01 2;10(1). Epub 2019 Jan 2.

Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia, 08003, Spain.

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January 2019

Selection in the Introgressed Regions of the Chimpanzee Genome.

Authors:
Jessica Nye Hafid Laayouni Martin Kuhlwilm Mayukh Mondal Tomas Marques-Bonet Jaume Bertranpetit

Genome Biol Evol 2018 04;10(4):1132-1138

Institut de Biologia Evolutiva (UPF-CSIC), Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.

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April 2018

Chimpanzee genomic diversity reveals ancient admixture with bonobos.

Authors:
Marc de Manuel Martin Kuhlwilm Peter Frandsen Vitor C Sousa Tariq Desai Javier Prado-Martinez Jessica Hernandez-Rodriguez Isabelle Dupanloup Oscar Lao Pille Hallast Joshua M Schmidt José María Heredia-Genestar Andrea Benazzo Guido Barbujani Benjamin M Peter Lukas F K Kuderna Ferran Casals Samuel Angedakin Mimi Arandjelovic Christophe Boesch Hjalmar Kühl Linda Vigilant Kevin Langergraber John Novembre Marta Gut Ivo Gut Arcadi Navarro Frands Carlsen Aida M Andrés Hans R Siegismund Aylwyn Scally Laurent Excoffier Chris Tyler-Smith Sergi Castellano Yali Xue Christina Hvilsom Tomas Marques-Bonet

Science 2016 10 27;354(6311):477-481. Epub 2016 Oct 27.

Institut de Biologia Evolutiva (Consejo Superior de Investigaciones Científicas-Universitat Pompeu Fabra), Barcelona Biomedical Research Park, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain. National Centre for Genomic Analysis-Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 08028 Barcelona, Spain. Institucio Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia 08010, Spain.

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October 2016

Evolution and demography of the great apes.

Authors:
Martin Kuhlwilm Marc de Manuel Alexander Nater Maja P Greminger Michael Krützen Tomas Marques-Bonet

Curr Opin Genet Dev 2016 Dec 4;41:124-129. Epub 2016 Oct 4.

Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain; Institucio Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia 08010, Spain; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain. Electronic address:

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December 2016

Ancient gene flow from early modern humans into Eastern Neanderthals.

Authors:
Martin Kuhlwilm Ilan Gronau Melissa J Hubisz Cesare de Filippo Javier Prado-Martinez Martin Kircher Qiaomei Fu Hernán A Burbano Carles Lalueza-Fox Marco de la Rasilla Antonio Rosas Pavao Rudan Dejana Brajkovic Željko Kucan Ivan Gušic Tomas Marques-Bonet Aida M Andrés Bence Viola Svante Pääbo Matthias Meyer Adam Siepel Sergi Castellano

Nature 2016 Feb 17;530(7591):429-33. Epub 2016 Feb 17.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.

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February 2016

A test for ancient selective sweeps and an application to candidate sites in modern humans.

Authors:
Fernando Racimo Martin Kuhlwilm Montgomery Slatkin

Mol Biol Evol 2014 Dec 28;31(12):3344-58. Epub 2014 Aug 28.

Department of Integrative Biology, University of California, Berkeley.

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December 2014

Analysis of candidate genes for lineage-specific expression changes in humans and primates.

Authors:
Cecilia Lindskog Martin Kuhlwilm Armaity Davierwala Ning Fu Geeta Hegde Mathias Uhlén Sanjay Navani Svante Pääbo Fredrik Pontén

J Proteome Res 2014 Aug 15;13(8):3596-606. Epub 2014 Jul 15.

Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University , Dag Hammarskjölds väg 20, SE-751 85 Uppsala, Sweden.

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August 2014

Patterns of coding variation in the complete exomes of three Neandertals.

Authors:
Sergi Castellano Genís Parra Federico A Sánchez-Quinto Fernando Racimo Martin Kuhlwilm Martin Kircher Susanna Sawyer Qiaomei Fu Anja Heinze Birgit Nickel Jesse Dabney Michael Siebauer Louise White Hernán A Burbano Gabriel Renaud Udo Stenzel Carles Lalueza-Fox Marco de la Rasilla Antonio Rosas Pavao Rudan Dejana Brajković Željko Kucan Ivan Gušic Michael V Shunkov Anatoli P Derevianko Bence Viola Matthias Meyer Janet Kelso Aida M Andrés Svante Pääbo

Proc Natl Acad Sci U S A 2014 May 21;111(18):6666-71. Epub 2014 Apr 21.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.

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May 2014

The complete genome sequence of a Neanderthal from the Altai Mountains.

Authors:
Kay Prüfer Fernando Racimo Nick Patterson Flora Jay Sriram Sankararaman Susanna Sawyer Anja Heinze Gabriel Renaud Peter H Sudmant Cesare de Filippo Heng Li Swapan Mallick Michael Dannemann Qiaomei Fu Martin Kircher Martin Kuhlwilm Michael Lachmann Matthias Meyer Matthias Ongyerth Michael Siebauer Christoph Theunert Arti Tandon Priya Moorjani Joseph Pickrell James C Mullikin Samuel H Vohr Richard E Green Ines Hellmann Philip L F Johnson Hélène Blanche Howard Cann Jacob O Kitzman Jay Shendure Evan E Eichler Ed S Lein Trygve E Bakken Liubov V Golovanova Vladimir B Doronichev Michael V Shunkov Anatoli P Derevianko Bence Viola Montgomery Slatkin David Reich Janet Kelso Svante Pääbo

Nature 2014 Jan 18;505(7481):43-9. Epub 2013 Dec 18.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.

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January 2014