Martin Hofmann-Apitius

Martin Hofmann-Apitius

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Martin Hofmann-Apitius

Martin Hofmann-Apitius

Publications by authors named "Martin Hofmann-Apitius"

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77Publications

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Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm.

BMC Bioinformatics 2019 Oct 11;20(1):494. Epub 2019 Oct 11.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/s12859-019-3101-1DOI Listing
October 2019

PathMe: merging and exploring mechanistic pathway knowledge.

BMC Bioinformatics 2019 May 15;20(1):243. Epub 2019 May 15.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53754, Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/s12859-019-2863-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6521546PMC
May 2019

Erratum: Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases.

NPJ Syst Biol Appl 2019 7;5:10. Epub 2019 Mar 7.

1Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1038/s41540-019-0082-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405862PMC
March 2019

ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases.

NPJ Syst Biol Appl 2019 13;5. Epub 2018 Dec 13.

1Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1038/s41540-018-0078-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292919PMC
December 2018

Insights into the Folding of Disulfide-Rich μ-Conotoxins.

ACS Omega 2018 Oct 1;3(10):12330-12340. Epub 2018 Oct 1.

Pharmaceutical Biochemistry and Bioanalytics, Pharmaceutical Institute, University of Bonn, An der Immenburg 4, D-53121 Bonn, Germany.

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http://pubs.acs.org/doi/10.1021/acsomega.8b01465
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http://dx.doi.org/10.1021/acsomega.8b01465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6217517PMC
October 2018

BEL2ABM: agent-based simulation of static models in Biological Expression Language.

Bioinformatics 2018 07;34(13):2316-2318

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bty107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022644PMC
July 2018

Neuroimaging Feature Terminology: A Controlled Terminology for the Annotation of Brain Imaging Features.

J Alzheimers Dis 2017 ;59(4):1153-1169

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany.

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http://dx.doi.org/10.3233/JAD-161148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5611802PMC
April 2018

Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models.

J Alzheimers Dis 2017 ;59(3):1045-1055

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Sankt Augustin, Germany.

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http://dx.doi.org/10.3233/JAD-170255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5545904PMC
April 2018

Analytical Strategy to Prioritize Alzheimer's Disease Candidate Genes in Gene Regulatory Networks Using Public Expression Data.

J Alzheimers Dis 2017 ;59(4):1237-1254

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany.

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http://dx.doi.org/10.3233/JAD-170011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5611835PMC
April 2018

Comorbidity Analysis between Alzheimer's Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs.

J Alzheimers Dis 2017 ;60(2):721-731

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany.

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http://dx.doi.org/10.3233/JAD-170440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5611890PMC
April 2018

Multi-omic approach decodes paradoxes of the triple-negative breast cancer: lessons for predictive, preventive and personalised medicine.

Amino Acids 2018 Apr 16;50(3-4):383-395. Epub 2017 Dec 16.

Breast Cancer Research Centre, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany.

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http://dx.doi.org/10.1007/s00726-017-2524-0DOI Listing
April 2018

Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases.

J Alzheimers Dis 2017 ;56(2):677-686

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany.

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http://www.medra.org/servlet/aliasResolver?alias=iospress&am
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http://dx.doi.org/10.3233/JAD-160222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5271458PMC
February 2018

A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities.

Database (Oxford) 2018 01;2018

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Konrad-Adenauer-Straße, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1093/database/bay050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007221PMC
January 2018

BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language.

Database (Oxford) 2018 01 1;2018. Epub 2018 Jan 1.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Sankt Augustin, Germany.

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http://dx.doi.org/10.1093/database/bay126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6301338PMC
January 2018

Trial watch: Tracing investment in drug development for Alzheimer disease.

Nat Rev Drug Discov 2017 12 23;16(12):819. Epub 2017 Oct 23.

Fraunhofer Institute for Algorithms and Scientific Computing, Sankt Augustin 53754, Germany.

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http://dx.doi.org/10.1038/nrd.2017.169DOI Listing
December 2017

Knowledge-driven computational modeling in Alzheimer's disease research: Current state and future trends.

Alzheimers Dement 2017 Nov 14;13(11):1292-1302. Epub 2017 Sep 14.

Department of Molecular and Integrative Physiology, and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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http://dx.doi.org/10.1016/j.jalz.2017.08.011DOI Listing
November 2017

Novel approaches to develop community-built biological network models for potential drug discovery.

Expert Opin Drug Discov 2017 08 6;12(8):849-857. Epub 2017 Jun 6.

a Philip Morris International R&D , Philip Morris Products S.A. , Neuchâtel , Switzerland.

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http://dx.doi.org/10.1080/17460441.2017.1335302DOI Listing
August 2017

Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis.

J Immunol Res 2015 9;2015:737168. Epub 2015 Nov 9.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53754 Sankt Augustin, Germany ; Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, Dahlmannstrasse 2, 53113 Bonn, Germany.

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http://dx.doi.org/10.1155/2015/737168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4655260PMC
September 2016

NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease.

J Biomed Semantics 2016 Jul 8;7:45. Epub 2016 Jul 8.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754, Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/s13326-016-0079-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4939021PMC
July 2016

NeuroTransDB: highly curated and structured transcriptomic metadata for neurodegenerative diseases.

Database (Oxford) 2015 16;2015. Epub 2015 Oct 16.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany,

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http://dx.doi.org/10.1093/database/bav099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608514PMC
May 2016

Towards a Pathway Inventory of the Human Brain for Modeling Disease Mechanisms Underlying Neurodegeneration.

J Alzheimers Dis 2016 04;52(4):1343-60

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany.

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http://dx.doi.org/10.3233/JAD-151178DOI Listing
April 2016

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders.

Int J Mol Sci 2015 Dec 7;16(12):29179-206. Epub 2015 Dec 7.

Translational Science Unit, SANOFI Recherche & Développement, 1 Avenue Pierre Brossolette, Chilly-Mazarin Cedex 91385, France.

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http://dx.doi.org/10.3390/ijms161226148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691095PMC
December 2015

Detecting miRNA Mentions and Relations in Biomedical Literature.

F1000Res 2014 28;3:205. Epub 2014 Aug 28.

Semantic Computing Group, CIT-EC, Bielefeld University, 33615 Bielefeld, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602280PMC
http://dx.doi.org/10.12688/f1000research.4591.3DOI Listing
November 2015

Computable cause-and-effect models of healthy and Alzheimer's disease states and their mechanistic differential analysis.

Alzheimers Dement 2015 Nov 4;11(11):1329-39. Epub 2015 Apr 4.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany; Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn-Aachen International Center for IT, Bonn, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jalz.2015.02.006DOI Listing
November 2015

Exploring novel mechanistic insights in Alzheimer's disease by assessing reliability of protein interactions.

Sci Rep 2015 Sep 8;5:13634. Epub 2015 Sep 8.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1038/srep13634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4562155PMC
September 2015

PDON: Parkinson's disease ontology for representation and modeling of the Parkinson's disease knowledge domain.

Theor Biol Med Model 2015 Sep 22;12:20. Epub 2015 Sep 22.

Department of Bionformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53754, Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/s12976-015-0017-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4580356PMC
September 2015

Is dementia research ready for big data approaches?

BMC Med 2015 Jun 22;13:145. Epub 2015 Jun 22.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754, Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/s12916-015-0367-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4476175PMC
June 2015

Construction of biological networks from unstructured information based on a semi-automated curation workflow.

Database (Oxford) 2015 Jun 17;2015:bav057. Epub 2015 Jun 17.

Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland and.

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http://dx.doi.org/10.1093/database/bav057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5630939PMC
June 2015

Towards the taxonomy of human disease.

Nat Rev Drug Discov 2015 02;14(2):75-6

New Medicines, UCB, 208 Bath Road, Slough, SL1 4EN, UK.

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http://dx.doi.org/10.1038/nrd4537DOI Listing
February 2015

Linking hypothetical knowledge patterns to disease molecular signatures for biomarker discovery in Alzheimer's disease.

Genome Med 2014 3;6(11):97. Epub 2014 Dec 3.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany ; Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn-Aachen International Center for Information Technology, 53113 Bonn, Germany.

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http://dx.doi.org/10.1186/s13073-014-0097-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256903PMC
December 2014

CSEO - the Cigarette Smoke Exposure Ontology.

J Biomed Semantics 2014 10;5:31. Epub 2014 Jul 10.

Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland.

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http://dx.doi.org/10.1186/2041-1480-5-31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120729PMC
August 2014

ADO: a disease ontology representing the domain knowledge specific to Alzheimer's disease.

Alzheimers Dement 2014 Mar 3;10(2):238-46. Epub 2013 Jul 3.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Sankt Augustin, Germany; Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn-Aachen International Center for IT, Bonn, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jalz.2013.02.009DOI Listing
March 2014

'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text.

PLoS Comput Biol 2013 25;9(7):e1003117. Epub 2013 Jul 25.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Sankt Augustin, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.1003117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723489PMC
February 2014

Text mining for systems biology.

Drug Discov Today 2014 Feb 23;19(2):140-4. Epub 2013 Sep 23.

Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 Sankt Augustin, Germany; Bonn-Aachen International Center for Information Technology (B-IT), Dahlmannstraβe 2, 53113 Bonn, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.drudis.2013.09.012DOI Listing
February 2014

From integrative disease modeling to predictive, preventive, personalized and participatory (P4) medicine.

EPMA J 2013 Nov 6;4(1):23. Epub 2013 Nov 6.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/1878-5085-4-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3832251PMC
November 2013

HuPSON: the human physiology simulation ontology.

J Biomed Semantics 2013 Nov 22;4(1):35. Epub 2013 Nov 22.

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/2041-1480-4-35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177144PMC
November 2013

Biomarker-guided translation of brain imaging into disease pathway models.

Sci Rep 2013 Nov 29;3:3375. Epub 2013 Nov 29.

1] Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin 53754, Germany [2] Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn-Aachen International Center for IT, Dahlmannstr. 2, Bonn 53113, Germany.

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http://dx.doi.org/10.1038/srep03375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843161PMC
November 2013

Challenges and opportunities for oncology biomarker discovery.

Drug Discov Today 2013 Jul 29;18(13-14):614-24. Epub 2012 Dec 29.

Knowledge Management, Merck Serono, 250 Frankfurterstrasse, Darmstadt 64293, Germany.

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http://dx.doi.org/10.1016/j.drudis.2012.12.011DOI Listing
July 2013

A network model of genomic hormone interactions underlying dementia and its translational validation through serendipitous off-target effect.

J Transl Med 2013 Jul 26;11:177. Epub 2013 Jul 26.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing-SCAI, Schloss Birlinghoven, Sankt Augustin 53754, Germany.

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http://dx.doi.org/10.1186/1479-5876-11-177DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733613PMC
July 2013

SVM Based Descriptor Selection and Classification of Neurodegenerative Disease Drugs for Pharmacological Modeling.

Mol Inform 2013 Mar 27;32(3):241-9. Epub 2013 Feb 27.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany..

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http://dx.doi.org/10.1002/minf.201200116DOI Listing
March 2013

Mining biomarker information in biomedical literature.

BMC Med Inform Decis Mak 2012 Dec 18;12:148. Epub 2012 Dec 18.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, 53754, Germany.

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http://dx.doi.org/10.1186/1472-6947-12-148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3541249PMC
December 2012

Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports.

J Biomed Inform 2012 Oct 25;45(5):885-92. Epub 2012 Apr 25.

Fraunhofer Institute for Algorithms and Scientific Computing-SCAI, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://linkinghub.elsevier.com/retrieve/pii/S153204641200061
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http://dx.doi.org/10.1016/j.jbi.2012.04.008DOI Listing
October 2012

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers.

BMC Bioinformatics 2011 5;12 Suppl 4:S4. Epub 2011 Jul 5.

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/1471-2105-12-S4-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194196PMC
December 2011

PLIO: an ontology for formal description of protein-ligand interactions.

Bioinformatics 2011 Jun 5;27(12):1684-90. Epub 2011 May 5.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Sankt Augustin 53754, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btr256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3106195PMC
June 2011

An Improved Weighted-Residue Profile Based Method of Using Protein-Ligand Interaction Information in Increasing Hits Selection from Virtual Screening: A Study on Virtual Screening of Human GPCR A2A Receptor Antagonists.

Mol Inform 2010 Nov 27;29(11):781-91. Epub 2010 Oct 27.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1002/minf.201000068DOI Listing
November 2010

In silico drug discovery approaches on grid computing infrastructures.

Curr Clin Pharmacol 2010 Feb;5(1):37-46

Department of Bioinformatics, Fraunhofer-Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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February 2010

DockFlow - a prototypic PharmaGrid for virtual screening integrating four different docking tools.

Stud Health Technol Inform 2009 ;147:3-12

Fraunhofer-Institute for Algorithms and Scientific Computing , Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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September 2009

A robust framework for rapid deployment of a virtual screening laboratory.

Stud Health Technol Inform 2009 ;147:212-21

Fraunhofer Institute SCAI, Department of Bioinformatics, Germany.

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September 2009

Concept-based semi-automatic classification of drugs.

J Chem Inf Model 2009 Aug;49(8):1986-92

Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany.

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http://pubs.acs.org/doi/abs/10.1021/ci9000844
Publisher Site
http://dx.doi.org/10.1021/ci9000844DOI Listing
August 2009

Identification of histone modifications in biomedical text for supporting epigenomic research.

BMC Bioinformatics 2009 Jan 30;10 Suppl 1:S28. Epub 2009 Jan 30.

Department of Bioinformatics, Fraunhofer Institute Algorithms and Scientific Computing (SCAI) Schloss Birlinghoven, D-53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1186/1471-2105-10-S1-S28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648793PMC
January 2009

Virtual high throughput screening (vHTS) on an optical high speed testbed.

Stud Health Technol Inform 2008 ;138:125-34

Fraunhofer Institute SCAI, Department of Bioinformatics, Germany.

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October 2008

@neuLink: a service-oriented application for biomedical knowledge discovery.

Stud Health Technol Inform 2008 ;138:165-72

Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, D-53754 St. Augustin, Germany.

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October 2008

Knowledge environments representing molecular entities for the virtual physiological human.

Philos Trans A Math Phys Eng Sci 2008 Sep;366(1878):3091-110

Bonn-Aachen International Center for Information Technology, University of Bonn, Dahlmannstrasse 2, 53113 Bonn, Germany.

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http://dx.doi.org/10.1098/rsta.2008.0099DOI Listing
September 2008

Detection of IUPAC and IUPAC-like chemical names.

Bioinformatics 2008 Jul;24(13):i268-76

Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btn181DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718657PMC
July 2008

Reconstruction of chemical molecules from images.

Conf Proc IEEE Eng Med Biol Soc 2007 ;2007:4609-12

Department of Digital Systems, Instituto Tecnologico Autonomo de Mexico, Mexico City.

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http://dx.doi.org/10.1109/IEMBS.2007.4353366DOI Listing
April 2008

OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature.

BMC Bioinformatics 2008 Feb 5;9:84. Epub 2008 Feb 5.

Research Unit on Biomedical Informatics (GRIB), IMIM, UPF, PRBB, c/Dr, Aiguader 88, E-08003 Barcelona, Spain.

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http://dx.doi.org/10.1186/1471-2105-9-84DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2277400PMC
February 2008

Identifying gene-specific variations in biomedical text.

J Bioinform Comput Biol 2007 Dec;5(6):1277-96

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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December 2007

Design of new plasmepsin inhibitors: a virtual high throughput screening approach on the EGEE grid.

J Chem Inf Model 2007 Sep-Oct;47(5):1818-28. Epub 2007 Aug 30.

Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1021/ci600451tDOI Listing
November 2007

Alternative to consensus scoring--a new approach toward the qualitative combination of docking algorithms.

J Chem Inf Model 2007 May-Jun;47(3):1036-44. Epub 2007 May 11.

Department of Bioinformatics, Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1021/ci6004965DOI Listing
September 2007

Identification of new drug classification terms in textual resources.

Bioinformatics 2007 Jul;23(13):i264-72

Fraunhofer Institute SCAI, Schloss Birlinghoven, 53754 Sankt Augustin, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btm196DOI Listing
July 2007