Martin Gruebele

Martin Gruebele

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Martin Gruebele

Publications by authors named "Martin Gruebele"

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An in vitro mimic of in-cell solvation for protein folding studies.

Protein Sci 2020 Jan 28. Epub 2020 Jan 28.

Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois.

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http://dx.doi.org/10.1002/pro.3833DOI Listing
January 2020

Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression.

Nat Cell Biol 2019 12 2;21(12):1578-1589. Epub 2019 Dec 2.

Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.

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http://dx.doi.org/10.1038/s41556-019-0433-zDOI Listing
December 2019

Proteins: "Boil 'Em, Mash 'Em, Stick 'Em in a Stew".

J Phys Chem B 2019 Oct 26;123(40):8341-8350. Epub 2019 Sep 26.

Center for Biophysics and Quantitative Biology , University of Illinois at Urbana-Champaign , Champaign , Illinois 61801 , United States.

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http://dx.doi.org/10.1021/acs.jpcb.9b05467DOI Listing
October 2019

Weak Chemical Interactions That Drive Protein Evolution: Crowding, Sticking, and Quinary Structure in Folding and Function.

Chem Rev 2019 Sep 29;119(18):10691-10717. Epub 2019 Jul 29.

Department of Chemistry , University of Illinois , Urbana , Illinois 61801 , United States.

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http://dx.doi.org/10.1021/acs.chemrev.8b00753DOI Listing
September 2019

In-Cell Protein-Protein Contacts: Transient Interactions in the Crowd.

J Phys Chem Lett 2019 Sep 10;10(18):5667-5673. Epub 2019 Sep 10.

Department of Chemistry , University of Illinois, Urbana-Champaign , Urbana , Illinois 61801 , United States.

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http://dx.doi.org/10.1021/acs.jpclett.9b01556DOI Listing
September 2019

Heat shock-induced chaperoning by Hsp70 is enabled in-cell.

PLoS One 2019 26;14(9):e0222990. Epub 2019 Sep 26.

Department of Chemistry, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0222990PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6762143PMC
September 2019

Blue Light Is a Universal Signal for Chemoreceptors.

J Bacteriol 2019 Jun 8;201(11). Epub 2019 May 8.

Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA

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http://jb.asm.org/lookup/doi/10.1128/JB.00762-18
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http://dx.doi.org/10.1128/JB.00762-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509653PMC
June 2019

Polymeric "Clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells.

J Am Chem Soc 2019 Jun 4;141(24):9693-9700. Epub 2019 Jun 4.

Institute for Molecular Engineering , The University of Chicago , Chicago , Illinois 60637 , United States.

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http://dx.doi.org/10.1021/jacs.9b04181DOI Listing
June 2019

Dodine as a Kosmo-Chaotropic Agent.

J Phys Chem Lett 2019 May 8;10(10):2600-2605. Epub 2019 May 8.

Department of Chemistry , University of Illinois , Urbana , Illinois 61801 , United States.

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http://dx.doi.org/10.1021/acs.jpclett.9b00379DOI Listing
May 2019

Fast pressure-jump all-atom simulations and experiments reveal site-specific protein dehydration-folding dynamics.

Proc Natl Acad Sci U S A 2019 03 5;116(12):5356-5361. Epub 2019 Mar 5.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801;

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http://dx.doi.org/10.1073/pnas.1814927116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6431218PMC
March 2019

Quantifying protein dynamics and stability in a living organism.

Nat Commun 2019 03 12;10(1):1179. Epub 2019 Mar 12.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.

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http://dx.doi.org/10.1038/s41467-019-09088-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414637PMC
March 2019

Imaging of Carbon Nanotube Electronic States Polarized by the Field of an Excited Quantum Dot.

ACS Nano 2019 Feb 29;13(2):1012-1018. Epub 2019 Jan 29.

Faculty of Chemistry , VNU-University of Science , Hanoi 10000 , Vietnam.

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http://dx.doi.org/10.1021/acsnano.8b06806DOI Listing
February 2019

Cell Volume Controls Protein Stability and Compactness of the Unfolded State.

J Phys Chem B 2018 12 26;122(49):11762-11770. Epub 2018 Oct 26.

Center for Biophysics and Computational Biology , University of Illinois , Urbana , Illinois 61801 , United States.

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http://dx.doi.org/10.1021/acs.jpcb.8b08216DOI Listing
December 2018

Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles.

J Am Chem Soc 2018 12 4;140(50):17656-17665. Epub 2018 Dec 4.

Institute of Chemical Biology and Nanomedicine, College of Chemistry and Chemical Engineering , Hunan University , Changsha , Hunan 410082 , China.

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http://dx.doi.org/10.1021/jacs.8b09867DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6473182PMC
December 2018

A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy.

Chem Sci 2018 Dec 3;9(48):9002-9011. Epub 2018 Oct 3.

Department of Physical and Chemical Sciences , University of L'Aquila , 67010 L'Aquila , Italy . Email:

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http://xlink.rsc.org/?DOI=C8SC03786H
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http://dx.doi.org/10.1039/c8sc03786hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6301204PMC
December 2018

Non-Steric Interactions Predict the Trend and Steric Interactions the Offset of Protein Stability in Cells.

Chemphyschem 2018 09 21;19(18):2290-2294. Epub 2018 Jun 21.

Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign Urbana, Illinois, 61801, United States.

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http://dx.doi.org/10.1002/cphc.201800534DOI Listing
September 2018

In-Cell Titration of Small Solutes Controls Protein Stability and Aggregation.

J Am Chem Soc 2018 08 10;140(33):10497-10503. Epub 2018 Aug 10.

Department of Chemistry , University of Illinois , Urbana , Illinois 61801 , United States.

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http://dx.doi.org/10.1021/jacs.8b04809DOI Listing
August 2018

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking.

FEBS Lett 2018 04 22;592(8):1357-1365. Epub 2018 Mar 22.

Department of Chemistry, University of Illinois, Urbana, IL, USA.

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http://dx.doi.org/10.1002/1873-3468.13025DOI Listing
April 2018

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells.

Biochemistry 2018 04 23;57(13):1929-1938. Epub 2018 Mar 23.

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http://dx.doi.org/10.1021/acs.biochem.8b00141DOI Listing
April 2018

How does solvation in the cell affect protein folding and binding?

Curr Opin Struct Biol 2018 02 13;48:23-29. Epub 2017 Oct 13.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1016/j.sbi.2017.09.003DOI Listing
February 2018

Orientation-dependent imaging of electronically excited quantum dots.

J Chem Phys 2018 Feb;148(6):064701

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://aip.scitation.org/doi/10.1063/1.5012784
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http://dx.doi.org/10.1063/1.5012784DOI Listing
February 2018

The Surface of Protein λ Can Act as a Template for Recurring Poly(ethylene glycol) Structure.

Biochemistry 2017 10 6;56(42):5671-5678. Epub 2017 Oct 6.

Department of Physics, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acs.biochem.7b00215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044911PMC
October 2017

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation.

FEBS Lett 2017 10 21;591(20):3265-3275. Epub 2017 Sep 21.

Department of Physical and Chemical Sciences, University of L'Aquila, Italy.

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http://dx.doi.org/10.1002/1873-3468.12836DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658256PMC
October 2017

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape.

J Phys Chem B 2017 09 31;121(36):8437-8446. Epub 2017 Aug 31.

Department of Chemistry, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acs.jpcb.7b04318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044910PMC
September 2017

Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels.

ACS Appl Mater Interfaces 2017 Jul 23;9(26):21606-21617. Epub 2017 Jun 23.

Beckman Institute for Advanced Science and Technology, ‡Department of Chemistry, §Department of Biochemistry, ∥Department of Chemical and Biomolecular Engineering, and ⊥Department of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acsami.7b01371DOI Listing
July 2017

Imaging and Manipulating Energy Transfer Among Quantum Dots at Individual Dot Resolution.

ACS Nano 2017 06 30;11(6):6328-6335. Epub 2017 May 30.

Department of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acsnano.7b02649DOI Listing
June 2017

Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Proc Natl Acad Sci U S A 2017 06 12;114(26):6776-6781. Epub 2017 Jun 12.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801;

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http://dx.doi.org/10.1073/pnas.1700818114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5495242PMC
June 2017

Eliminating a Protein Folding Intermediate by Tuning a Local Hydrophobic Contact.

J Phys Chem B 2017 04 29;121(15):3276-3284. Epub 2016 Sep 29.

Baker Laboratory of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853-1301, United States.

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http://dx.doi.org/10.1021/acs.jpcb.6b07250DOI Listing
April 2017

Mechanical approach to chemical transport.

Proc Natl Acad Sci U S A 2016 10 19;113(40):11116-11121. Epub 2016 Sep 19.

Department of Chemistry, University of Illinois, Urbana, IL 61801; Department of Physics, University of Illinois, Urbana, IL 61801

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http://dx.doi.org/10.1073/pnas.1600866113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5056083PMC
October 2016

Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State.

J Chem Theory Comput 2016 Sep 1;12(9):4593-9. Epub 2016 Sep 1.

Department of Chemistry, ‡Department of Biochemistry, ¶Department of Physics, §Center for the Physics of Living Cells, and ∥Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acs.jctc.6b00418DOI Listing
September 2016

Globular Protein Folding In Vitro and In Vivo.

Annu Rev Biophys 2016 07;45:233-51

Department of Chemistry, University of Illinois, Urbana, Illinois 61801; email:

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http://dx.doi.org/10.1146/annurev-biophys-062215-011236DOI Listing
July 2016

Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ(6-85) Folding.

J Phys Chem Lett 2016 06 13;7(11):1960-5. Epub 2016 May 13.

Department of Chemistry, School of Chemical Sciences, and Beckman Institute for Advanced Science and Technology, #National Center for Supercomputing Applications, and ‡Department of Physics and Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign , Champaign, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acs.jpclett.6b00582DOI Listing
June 2016

Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics.

Phys Chem Chem Phys 2016 Jun;18(25):16856-61

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA. and Beckman Institute, University of Illinois, Urbana, Illinois 61801, USA and Department of Physics, University of Illinois, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1039/c6cp02654kDOI Listing
June 2016

Environmental Fluctuations and Stochastic Resonance in Protein Folding.

Chemphyschem 2016 05 20;17(9):1341-8. Epub 2016 Jan 20.

Department of Physics, Ariel University, Ariel, 40770, Israel.

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http://doi.wiley.com/10.1002/cphc.201501041
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http://dx.doi.org/10.1002/cphc.201501041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881862PMC
May 2016

Dodine as a transparent protein denaturant for circular dichroism and infrared studies.

Protein Sci 2016 May 21;25(5):1061-8. Epub 2016 Mar 21.

Department of Chemistry, University of Illinois, Urbana, Illinois, 61801.

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http://dx.doi.org/10.1002/pro.2914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4838651PMC
May 2016

Stochastic Resonance in Protein Folding Dynamics.

Chemphyschem 2016 05 28;17(9):1305-13. Epub 2016 Apr 28.

Department of Chemistry and Biochemistry and, Institute for Physical Science and Technology, University of Maryland, College Park, MD, 20742, USA.

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http://dx.doi.org/10.1002/cphc.201501125DOI Listing
May 2016

Subcellular modulation of protein VlsE stability and folding kinetics.

FEBS Lett 2016 May 17;590(10):1409-16. Epub 2016 May 17.

Center for Biophysics and Quantitative Biology, University of Illinois, Urbana, IL, USA.

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http://dx.doi.org/10.1002/1873-3468.12193DOI Listing
May 2016

The Behavioral Space of Zebrafish Locomotion and Its Neural Network Analog.

PLoS One 2015 1;10(7):e0128668. Epub 2015 Jul 1.

Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL, 61801, United States of America; Department of Physics, Center for the Physics of Living Cells, University of Illinois, Urbana, IL, 61801, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128668PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489106PMC
April 2016

High-Resolution Mapping of the Folding Transition State of a WW Domain.

J Mol Biol 2016 Apr 12;428(8):1617-36. Epub 2016 Feb 12.

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2016.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4835268PMC
April 2016

ReAsH as a Quantitative Probe of In-Cell Protein Dynamics.

Biochemistry 2016 Apr 18;55(13):1968-76. Epub 2016 Mar 18.

Department of Physics, ‡Department of Chemistry, and §Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/acs.biochem.5b01336DOI Listing
April 2016

Disulfide Bridges: Bringing Together Frustrated Structure in a Bioactive Peptide.

Biophys J 2016 04;110(8):1744-1752

Centre for Biodiscovery and Molecular Development of Therapeutics, Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, Queensland, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2016.03.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4850350PMC
April 2016

The Effect of Fluorescent Protein Tags on Phosphoglycerate Kinase Stability Is Nonadditive.

J Phys Chem B 2016 Mar 14;120(11):2878-85. Epub 2016 Mar 14.

Department of Chemistry, Hanoi University of Science, Vietnam National University , Hanoi, Vietnam.

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http://dx.doi.org/10.1021/acs.jpcb.5b11915DOI Listing
March 2016

Fast-folding proteins under stress.

Cell Mol Life Sci 2015 Nov 1;72(22):4273-85. Epub 2015 Aug 1.

Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.

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http://dx.doi.org/10.1007/s00018-015-2002-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4618258PMC
November 2015

Optoelectronic Switching of a Carbon Nanotube Chiral Junction Imaged with Nanometer Spatial Resolution.

ACS Nano 2015 Nov 15;9(11):10563-70. Epub 2015 Sep 15.

Department of Chemistry and Biochemistry, California Polytechnic State University , San Luis Obispo, California 93407, United States.

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http://dx.doi.org/10.1021/acsnano.5b04872DOI Listing
November 2015

Imaging Excited Orbitals of Quantum Dots: Experiment and Electronic Structure Theory.

J Am Chem Soc 2015 Nov 13;137(46):14743-50. Epub 2015 Nov 13.

Department of Chemistry, University of Washington , Seattle, Washington 98195, United States.

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http://dx.doi.org/10.1021/jacs.5b09272DOI Listing
November 2015

Coupled protein diffusion and folding in the cell.

PLoS One 2014 1;9(12):e113040. Epub 2014 Dec 1.

Department of Physics, University of Illinois, Urbana, IL, United States of America; Department of Chemistry and Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113040PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249841PMC
September 2015

Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations.

J Am Chem Soc 2015 Jun 2;137(22):7152-7159. Epub 2015 Jun 2.

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States.

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http://pubs.acs.org/doi/10.1021/jacs.5b02474
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http://dx.doi.org/10.1021/jacs.5b02474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794261PMC
June 2015

Mapping fast protein folding with multiple-site fluorescent probes.

Proc Natl Acad Sci U S A 2015 Jun 15;112(26):7966-71. Epub 2015 Jun 15.

Department of Chemistry, University of Illinois, Urbana, IL 61801; Department of Physics, University of Illinois, Urbana, IL 61801; Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801

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http://dx.doi.org/10.1073/pnas.1422683112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4491763PMC
June 2015

Sub-nanometer glass surface dynamics induced by illumination.

J Chem Phys 2015 Jun;142(23):234505

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1063/1.4922695DOI Listing
June 2015

Native conformational dynamics of the spliceosomal U1A protein.

J Phys Chem B 2015 Mar 24;119(9):3651-61. Epub 2015 Feb 24.

Department of Biochemistry, and ‡Department of Chemistry, Department of Physics, Center for the Physics of Living Cells, and Center for Biophysics and Quantitative Biology, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/jp511760mDOI Listing
March 2015

Protein dynamics in simulation and experiment.

Authors:
Martin Gruebele

J Am Chem Soc 2014 Dec;136(48):16695-7

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http://dx.doi.org/10.1021/ja510614sDOI Listing
December 2014

On readout of vibrational qubits using quantum beats.

J Chem Phys 2014 Dec;141(22):224306

Chemistry Department, Marquette University, Milwaukee, Wisconsin 53201, USA.

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http://dx.doi.org/10.1063/1.4903055DOI Listing
December 2014

The energy landscape of glassy dynamics on the amorphous hafnium diboride surface.

J Chem Phys 2014 Nov;141(20):204501

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1063/1.4901132DOI Listing
November 2014

Two structural scenarios for protein stabilization by PEG.

J Phys Chem B 2014 Jul 2;118(28):8388-95. Epub 2014 Jun 2.

Department of Physics and Center for the Physics of Living Cells, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/jp502234sDOI Listing
July 2014

Protein folding dynamics in the cell.

J Phys Chem B 2014 Jul 17;118(29):8459-70. Epub 2014 Jun 17.

Department of Biochemistry, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/jp501866vDOI Listing
July 2014

CARPe diem.

Authors:
Martin Gruebele

Biophys J 2014 Jul;107(1):3-4

Center for Biophysics and Quantitative Biology, and Departments of Chemistry and Physics, University of Illinois, Urbana, Illinois. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2014.04.059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119260PMC
July 2014

Periodic and stochastic thermal modulation of protein folding kinetics.

J Chem Phys 2014 Jul;141(3):035103

Departments of Chemistry and Physics and Center for Biophysics and Computational Biology, University of Illinois, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1063/1.4887360DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214355PMC
July 2014

Fast protein folding kinetics.

Q Rev Biophys 2014 May 18;47(2):95-142. Epub 2014 Mar 18.

Departments of Physics, Chemistry, and Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1017/S003358351400002XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4047647PMC
May 2014

Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment.

J Am Chem Soc 2014 Mar 3;136(11):4265-72. Epub 2014 Feb 3.

Department of Physics, Beckman Institute, §Department of Chemistry, and ‡Center for Biophysics and Computational Biology, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/ja412639uDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3985862PMC
March 2014

The extracellular protein VlsE is destabilized inside cells.

J Mol Biol 2014 Jan 4;426(1):11-20. Epub 2013 Sep 4.

Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA; Department of Chemistry, University of Illinois, Urbana, IL 61801, USA; Department of Physics, University of Illinois, Urbana, IL 61801, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2013.08.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059009PMC
January 2014

Temporal variation of a protein folding energy landscape in the cell.

J Am Chem Soc 2013 Dec 13;135(51):19215-21. Epub 2013 Dec 13.

Department of Chemistry and ‡Department of Physics and Center for Biophysics and Computational Biology, University of Illinois , Urbana, Illinois 61801, United States.

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http://dx.doi.org/10.1021/ja4087165DOI Listing
December 2013

Quinary protein structure and the consequences of crowding in living cells: leaving the test-tube behind.

Bioessays 2013 Nov 14;35(11):984-93. Epub 2013 Aug 14.

Department of Chemistry, University of Illinois, Urbana, IL, USA.

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http://dx.doi.org/10.1002/bies.201300080DOI Listing
November 2013

More protected vibrational states at the dissociation limit of SCCl2.

J Phys Chem A 2013 Nov 30;117(46):12082-90. Epub 2013 Sep 30.

Department of Chemistry, ‡Department of Physics, and §Center for Biophysics and Computational Biology, University of Illinois , Urbana , Illinois 61801, United States.

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November 2013

Dodine as a protein denaturant: the best of two worlds?

J Phys Chem B 2013 Oct 16;117(42):13090-7. Epub 2013 Aug 16.

Department of Physics, Center for the Physics of Living Cells, University of Illinois , Urbana, Illinois 61801, United States.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3834592PMC
October 2013

Tribute to Peter G. Wolynes.

J Phys Chem B 2013 Oct;117(42):12669-71

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October 2013

Perspective: Reaches of chemical physics in biology.

J Chem Phys 2013 Sep;139(12):121701

Departments of Chemistry and Physics, and Center for Biophysics and Computational Biology, University of Illinois, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1063/1.4820139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5942441PMC
September 2013

Franck-Condon fingerprinting of vibration-tunneling spectra.

J Phys Chem A 2013 Aug 2;117(32):7535-41. Epub 2013 May 2.

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.

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August 2013

Crowding effects on the small, fast-folding protein lambda6-85.

Faraday Discuss 2012 ;157:451-62; discussion 475-500

Center for Biophysics and Computational Biology, University of Illinois, 600 South Mathews Avenue, Urbana-Champaign, IL 61801, USA.

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http://dx.doi.org/10.1039/c2fd20009kDOI Listing
June 2013

Transient helical structure during PI3K and Fyn SH3 domain folding.

J Phys Chem B 2013 May 18;117(17):4836-43. Epub 2013 Apr 18.

Department of Physics, Kansai Medical University, 2-5-1 Shinmachi, Hirakata, 573-1010, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3841067PMC
May 2013

Misplaced helix slows down ultrafast pressure-jump protein folding.

Proc Natl Acad Sci U S A 2013 May 25;110(20):8087-92. Epub 2013 Apr 25.

Department of Chemistry, Center for the Physics of Living Cells and Beckman Institute, University of Illinois, Urbana, IL 61801, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3657825PMC
May 2013

The Gold Nanorod-Biology Interface: From Proteins to Cells to Tissue.

Curr Phys Chem 2013 Apr;3(2)

Department of Chemistry, University of Illinois, Urbana IL 61801 USA ; Beckman Institute for Advanced Science and Technology, University of Illinois, Urbana IL 61801 USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3864848PMC
April 2013

Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Proc Natl Acad Sci U S A 2013 Jan 31;110(5):1617-22. Epub 2012 Dec 31.

Lehrstuhl für Physikalische Chemie II, Ruhr Universität, 44801 Bochum, Germany.

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http://dx.doi.org/10.1073/pnas.1214911110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562781PMC
January 2013

High fidelity quantum gates with vibrational qubits.

J Phys Chem A 2012 Nov 21;116(46):11347-54. Epub 2012 Aug 21.

Department of Chemistry and Center for Biophysics and Computational Biology, University of Illinois, Urbana, Illinois 61801, USA.

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November 2012

Temperature dependence of protein folding kinetics in living cells.

Proc Natl Acad Sci U S A 2012 Oct 4;109(44):17863-7. Epub 2012 Jun 4.

Department of Physics, Chemical and Biomolecular Engineering, and Chemistry and Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1201797109
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3497798PMC
October 2012

Studying IDP stability and dynamics by fast relaxation imaging in living cells.

Methods Mol Biol 2012 ;895:101-11

Department of Chemistry, University of Illinois, Urbana-Champaign, IL, USA.

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October 2012

Rapid perturbation of free-energy landscapes: from in vitro to in vivo.

Chemistry 2012 May 19;18(21):6420-7. Epub 2012 Apr 19.

Department of Physics, University of Illinois, Urbana-Champaign, 600 S. Mathews Avenue, Urbana, IL 61801, USA.

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May 2012

Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations.

J Phys Chem Lett 2012 May 11;3(9):1117-1123. Epub 2012 Apr 11.

Beckman Institute, Department of Physics, Center for the Physics of Living Cells, Center for Biophysics and Computational Biology, and Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377354PMC
May 2012

The fast and the slow: folding and trapping of λ6-85.

J Am Chem Soc 2011 Dec 14;133(48):19338-41. Epub 2011 Nov 14.

Department of Chemistry and Center for Biophysics and Computational Biology, University of Illinois, Urbana, Illinois 61801, USA.

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December 2011

Fast Relaxation Imaging in living cells.

Curr Protoc Protein Sci 2011 Aug;Chapter 28:Unit28.1

University of Illinois, Urbana, Illinois, USA.

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August 2011

Better biomolecule thermodynamics from kinetics.

J Chem Phys 2011 Jul;135(1):015102

Center for Biophysics and Computational Biology, University of Illinois, Urbana, Illinois 61801, USA.

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July 2011

Multistep kinetics of the U1A-SL2 RNA complex dissociation.

J Mol Biol 2011 May 23;408(5):896-908. Epub 2011 Mar 23.

Department of Chemistry, University of Illinois, Urbana, IL 61801, USA.

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May 2011

Reducing lambda repressor to the core.

J Phys Chem B 2011 Mar 14;115(9):2090-6. Epub 2011 Feb 14.

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.

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March 2011

A triple threat to single molecules.

Authors:
Martin Gruebele

Nat Methods 2011 Mar;8(3):213-5

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March 2011

Two- and higher point correlation functions in proteins.

Authors:
Martin Gruebele

J Biomol Struct Dyn 2011 Feb;28(4):615-6; discussion 669-674

Department of Chemistry Physics, and Center for Biophysics Computational Biology University of Illinois, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1080/073911011010524963DOI Listing
February 2011

Computational design and experimental testing of the fastest-folding β-sheet protein.

J Mol Biol 2011 Jan 23;405(1):43-8. Epub 2010 Oct 23.

D. E. Shaw Research, New York, NY 10036, USA.

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January 2011

Loop and stem dynamics during RNA hairpin folding and unfolding.

RNA 2010 Dec 20;16(12):2427-34. Epub 2010 Oct 20.

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995403PMC
December 2010

Direct imaging of room temperature optical absorption with subnanometer spatial resolution.

Nano Lett 2010 Dec 8;10(12):4897-900. Epub 2010 Nov 8.

Beckman Institute for Advanced Science and Technology.

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December 2010

Molecular histopathology by spectrally reconstructed nonlinear interferometric vibrational imaging.

Cancer Res 2010 Dec 23;70(23):9562-9. Epub 2010 Nov 23.

Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-1554DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3213764PMC
December 2010

Analytical biochemistry: Weighing up protein folding.

Authors:
Martin Gruebele

Nature 2010 Dec;468(7324):640-1

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December 2010

Functional role of ribosomal signatures.

Biophys J 2010 Dec;99(12):3930-40

Center for Biophysics and Computational Biology, Department of Chemistry, University of Illinois, Urbana, Illinois, USA.

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http://dx.doi.org/10.1016/j.bpj.2010.09.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3000519PMC
December 2010

Context-dependent effects of asparagine glycosylation on Pin WW folding kinetics and thermodynamics.

J Am Chem Soc 2010 Nov;132(43):15359-67

Department of Chemistry, Scripps Research Institute, La Jolla, California 92037, United States.

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http://dx.doi.org/10.1021/ja106896tDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965790PMC
November 2010

The diffusion coefficient for PGK folding in eukaryotic cells.

Biophys J 2010 Nov;99(9):L69-71

Department of Chemistry, University of Illinois, Urbana, Illinois, USA.

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http://dx.doi.org/10.1016/j.bpj.2010.08.066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965994PMC
November 2010

Antifreeze glycoprotein activity correlates with long-range protein-water dynamics.

J Am Chem Soc 2010 Sep;132(35):12210-1

Department of Chemistry, University of Illinois, Urbana, Illinois 61801, USA.

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http://pubs.acs.org/doi/abs/10.1021/ja1051632
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September 2010

Protein folding.

Authors:
Martin Gruebele

Methods 2010 Sep;52(1):1-2

Department of Physics, and Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, IL 61801, USA.

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http://dx.doi.org/10.1016/j.ymeth.2010.08.010DOI Listing
September 2010