Martin Eisenacher

Martin Eisenacher

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Martin Eisenacher

Martin Eisenacher

Publications by authors named "Martin Eisenacher"

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Digital droplet PCR-based chimerism analysis for monitoring of hematopoietic engraftment after allogeneic stem cell transplantation.

Int J Lab Hematol 2019 Oct 21;41(5):615-621. Epub 2019 Jun 21.

IMBL Medical Clinic, Ruhr-University Bochum, Universitätsklinikum Knappschaftskrankenhaus Bochum GmbH, Bochum, Germany.

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http://dx.doi.org/10.1111/ijlh.13073DOI Listing
October 2019

Protein Biomarker Discovery Using Human Blood Plasma Microparticles.

Methods Mol Biol 2019 ;1959:51-64

Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany.

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http://dx.doi.org/10.1007/978-1-4939-9164-8_4DOI Listing
July 2019

Monocytes-neutrophils-ratio as predictive marker for failure of first induction therapy in AML.

Blood Cells Mol Dis 2019 07 18;77:103-108. Epub 2019 Apr 18.

Department of Medicine, Knappschaftskrankenhaus Bochum-Langendreer, Ruhr University Bochum, Germany.

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http://dx.doi.org/10.1016/j.bcmd.2019.04.008DOI Listing
July 2019

Protein Inference Using PIA Workflows and PSI Standard File Formats.

J Proteome Res 2019 02 5;18(2):741-747. Epub 2018 Dec 5.

Ruhr University Bochum , Medical Faculty, Medizinisches Proteom-Center , Universitaetsstrasse 150 , D-44801 Bochum , Germany.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.8b00723
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http://dx.doi.org/10.1021/acs.jproteome.8b00723DOI Listing
February 2019

Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.

J Proteome Res 2018 10 12;17(10):3418-3430. Epub 2018 Sep 12.

Ruhr University Bochum, Medical Faculty , Medizinisches Proteom-Center , Universitaetsstrasse 150 , D-44801 Bochum , Germany.

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http://dx.doi.org/10.1021/acs.jproteome.8b00308DOI Listing
October 2018

MicroRNA-30c as a novel diagnostic biomarker for primary and secondary B-cell lymphoma of the CNS.

J Neurooncol 2018 May 11;137(3):463-468. Epub 2018 Jan 11.

Department of Medicine, Ruhr-University of Bochum, Knappschaftskrankenhaus Bochum-Langendreer, Bochum, Germany.

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http://dx.doi.org/10.1007/s11060-018-2749-0DOI Listing
May 2018

Quantitative proteome analysis of plasma microparticles for the characterization of HCV-induced hepatic cirrhosis and hepatocellular carcinoma.

Proteomics Clin Appl 2017 Dec 10;11(11-12). Epub 2017 Jul 10.

Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany.

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http://dx.doi.org/10.1002/prca.201700014DOI Listing
December 2017

Comprehensive proteomic analysis of Penicillium verrucosum.

Proteomics 2017 May;17(9)

VetCore Facility for Research, University of Veterinary Medicine, Vienna, Austria.

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http://dx.doi.org/10.1002/pmic.201600467DOI Listing
May 2017

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

Anal Chem 2017 04 30;89(8):4474-4479. Epub 2017 Mar 30.

Division of Molecular Biology and Human Genetics, Stellenbosch University Faculty of Medicine and Health Sciences , Tygerberg Hospital, Francie Van Zijl Drive, Cape Town 7505, South Africa.

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http://dx.doi.org/10.1021/acs.analchem.6b04310DOI Listing
April 2017

In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

J Proteomics 2017 01 4;150:170-182. Epub 2016 Aug 4.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL- EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2016.08.002DOI Listing
January 2017

Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions.

Vet Res 2016 10 6;47(1):100. Epub 2016 Oct 6.

Clinical Division of Fish Medicine, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine, Vienna, Austria.

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http://dx.doi.org/10.1186/s13567-016-0384-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054536PMC
October 2016

Boolean modeling techniques for protein co-expression networks in systems medicine.

Expert Rev Proteomics 2016 06 6;13(6):555-69. Epub 2016 May 6.

a Medizinisches Proteom Center (MPC) , Ruhr-Universität Bochum , Bochum , Germany.

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http://dx.doi.org/10.1080/14789450.2016.1181546DOI Listing
June 2016

PAA: an R/bioconductor package for biomarker discovery with protein microarrays.

Bioinformatics 2016 05 22;32(10):1577-9. Epub 2016 Jan 22.

Medizinisches Proteom-Center, Ruhr-University Bochum, Bochum, 44801, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btw037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4866526PMC
May 2016

Flow cytometric characterization of microglia in the offspring of PolyI:C treated mice.

Brain Res 2016 Apr 10;1636:172-182. Epub 2016 Feb 10.

Department of Psychiatry, LWL University Hospital, Ruhr-University Bochum, Alexandrinenstr. 1, D-44791 Bochum, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.brainres.2016.02.004DOI Listing
April 2016

ProCon - PROteomics CONversion tool.

J Proteomics 2015 Nov 13;129:56-62. Epub 2015 Jul 13.

Medizinisches Proteom Center (MPC), Ruhr-Universität Bochum, D-44801 Bochum, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2015.06.015DOI Listing
November 2015

Differential proteomic and tissue expression analyses identify valuable diagnostic biomarkers of hepatocellular differentiation and hepatoid adenocarcinomas.

Pathology 2015 Oct;47(6):543-50

1Institute of Pathology, University Hospital of Essen, University of Duisburg-Essen, Essen 2Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum 3Institute for Medical Informatics, Biometry and Epidemiology, University Hospital of Essen, University of Duisburg-Essen, Essen 4Institute of Pathology, Klinikum Dortmund gGmbH, Dortmund 5Department of General, Visceral and Transplantation Surgery, University Hospital of Essen, University of Duisburg-Essen, Essen 6West German Cancer Centre Essen, University Hospital of Essen, University of Duisburg-Essen, Essen 7Department of Gastroenterology and Hepatology, University Hospital of Essen, University of Duisburg-Essen, Essen 8Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany *contributed equally as senior authors.

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http://dx.doi.org/10.1097/PAT.0000000000000298DOI Listing
October 2015

IGFBP1 in epithelial circulating tumor cells as a potential response marker to selective internal radiation therapy in hepatocellular carcinoma.

Biomark Med 2014 ;8(5):687-98

Department of Medical Oncology, Molecular Oncology Risk-Profile Evaluation, West German Cancer Center, University Hospital of Essen, Essen, Germany.

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http://dx.doi.org/10.2217/bmm.14.23DOI Listing
August 2015

PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface.

J Proteome Res 2015 Jul 10;14(7):2988-97. Epub 2015 Jun 10.

Medizinisches Proteom-Center, Ruhr-Universität Bochum, 44801 Bochum, Germany.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.5b00121
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http://dx.doi.org/10.1021/acs.jproteome.5b00121DOI Listing
July 2015

Development of data representation standards by the human proteome organization proteomics standards initiative.

J Am Med Inform Assoc 2015 May 28;22(3):495-506. Epub 2015 Feb 28.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/jamia/ocv001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4457114PMC
May 2015

Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets.

Transfusion 2015 Mar 21;55(3):507-21. Epub 2014 Oct 21.

Institute for Clinical Chemistry and Laboratory Medicine, University Clinic of Regensburg, Regensburg, Germany.

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http://dx.doi.org/10.1111/trf.12874DOI Listing
March 2015

Intestinal amino acid availability via PEPT-1 affects TORC1/2 signaling and the unfolded protein response.

J Proteome Res 2014 Aug 16;13(8):3685-92. Epub 2014 Jul 16.

ZIEL Research Center of Nutrition and Food Sciences, Molecular Nutrition and Biochemistry Unit, Technische Universität München , Gregor-Mendel-Str. 2, 85350 Freising, Germany.

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http://pubs.acs.org/doi/10.1021/pr5002669
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http://dx.doi.org/10.1021/pr5002669DOI Listing
August 2014

The membrane proteome of sensory cilia to the depth of olfactory receptors.

Mol Cell Proteomics 2014 Jul 18;13(7):1828-43. Epub 2014 Apr 18.

the ¶Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, Schänzlestrasse 1, 79104 Freiburg,

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http://www.mcponline.org/content/early/2014/04/18/mcp.M113.0
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http://www.mcponline.org/cgi/doi/10.1074/mcp.M113.035378
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http://dx.doi.org/10.1074/mcp.M113.035378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4083118PMC
July 2014

Proteome analysis of a hepatocyte-specific BIRC5 (survivin)-knockout mouse model during liver regeneration.

J Proteome Res 2014 Jun 27;13(6):2771-82. Epub 2014 May 27.

Medizinisches Proteom-Center, Ruhr Universität Bochum , Bochum, Germany.

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http://dx.doi.org/10.1021/pr401188rDOI Listing
June 2014

Comparison of label-free and label-based strategies for proteome analysis of hepatoma cell lines.

Biochim Biophys Acta 2014 May 14;1844(5):967-76. Epub 2013 Aug 14.

Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2013.07.017DOI Listing
May 2014

Autoimmune profiling with protein microarrays in clinical applications.

Biochim Biophys Acta 2014 May 7;1844(5):977-87. Epub 2014 Mar 7.

Department of Medical Proteomics/Bioanalytics, Medizinisches Proteom-Center, Ruhr-Universität Bochum, 44801 Bochum, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2014.02.023DOI Listing
May 2014

Comparison of alternative MS/MS and bioinformatics approaches for confident phosphorylation site localization.

J Proteome Res 2014 Feb 3;13(2):1128-37. Epub 2014 Jan 3.

Faculty of Biology, Functional Proteomics, University of Freiburg , 79104 Freiburg, Germany.

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http://dx.doi.org/10.1021/pr400402sDOI Listing
February 2014

A practical data processing workflow for multi-OMICS projects.

Biochim Biophys Acta 2014 Jan 15;1844(1 Pt A):52-62. Epub 2013 Mar 15.

Medizinisches Proteom-Center, Ruhr-Universitaet Bochum, Universitaetsstrasse 150, D-44801 Bochum, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2013.02.029DOI Listing
January 2014

The amino acid's backup bone - storage solutions for proteomics facilities.

Biochim Biophys Acta 2014 Jan 27;1844(1 Pt A):2-11. Epub 2013 May 27.

Medizinisches Proteom-Center, Ruhr-Universität Bochum, Universitätsstrasse 150, D-44801 Bochum, Germany.

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http://dx.doi.org/10.1016/j.bbapap.2013.05.018DOI Listing
January 2014

Computational proteomics in the post-identification era.

Biochim Biophys Acta 2014 Jan;1844(1 Pt A)

Medizinisches Proteom-Center, Ruhr-University Bochum, Universitätsstrasse 150, ZKF E.043, Bochum, 44801, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2013.10.012DOI Listing
January 2014

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Mol Cell Proteomics 2013 Aug 18;12(8):2332-40. Epub 2013 Apr 18.

Quantitative Biology Center and Department of Computer Science, Center for Bioinformatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1074/mcp.O113.028506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734589PMC
August 2013

Individual profiling of circulating tumor cell composition and therapeutic outcome in patients with hepatocellular carcinoma.

Transl Oncol 2013 Aug 1;6(4):420-8. Epub 2013 Aug 1.

Department of Medical Oncology, Molecular Oncology Risk-Profile Evaluation, West German Cancer Center, University Hospital of Essen, Essen, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3730017PMC
http://dx.doi.org/10.1593/tlo.13271DOI Listing
August 2013

A combination of two electrophoretical approaches for detailed proteome-based characterization of SCLC subtypes.

Arch Physiol Biochem 2013 Jul 8;119(3):114-25. Epub 2013 May 8.

Molecular Proteomics Laboratory, BMFZ, Universität Düsseldorf, Germany.

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http://dx.doi.org/10.3109/13813455.2013.789529DOI Listing
July 2013

Factor inhibiting HIF-1 (FIH-1) modulates protein interactions of apoptosis-stimulating p53 binding protein 2 (ASPP2).

J Cell Sci 2013 Jun 19;126(Pt 12):2629-40. Epub 2013 Apr 19.

Institute of Physiology, Faculty of Medicine, University Duisburg-Essen, 45147 Essen, Germany.

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http://dx.doi.org/10.1242/jcs.117564DOI Listing
June 2013

Search and decoy: the automatic identification of mass spectra.

Methods Mol Biol 2012 ;893:445-88

Department of Medical Proteomics/Bioanalytics, Medizinishchces Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany.

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http://dx.doi.org/10.1007/978-1-61779-885-6_28DOI Listing
September 2012

Dynamic changes of the Caenorhabditis elegans proteome during ontogenesis assessed by quantitative analysis with 15N metabolic labeling.

J Proteome Res 2012 Sep 24;11(9):4594-604. Epub 2012 Aug 24.

ZIEL Research Center of Nutrition and Food Sciences, Abteilung Biochemie, Technische Universität München, Gregor-Mendel-Strasse 2, 85350 Freising, Germany.

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http://pubs.acs.org/doi/10.1021/pr300385v
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http://dx.doi.org/10.1021/pr300385vDOI Listing
September 2012

Find pairs: the module for protein quantification of the PeakQuant software suite.

OMICS 2012 Sep 21;16(9):457-67. Epub 2012 Aug 21.

Medizinisches Proteom-Center, Ruhr-Universitaet Bochum, Bochum, Germany.

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http://dx.doi.org/10.1089/omi.2011.0140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3437042PMC
September 2012

Sense and nonsense of pathway analysis software in proteomics.

J Proteome Res 2011 Dec 14;10(12):5398-408. Epub 2011 Nov 14.

Functional Proteomics, Medizinisches Proteom-Center, Ruhr-University Bochum, D-44780 Bochum, Germany.

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http://pubs.acs.org/doi/abs/10.1021/pr200654k
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http://dx.doi.org/10.1021/pr200654kDOI Listing
December 2011

Quality meets quantity - quality control, data standards and repositories.

Proteomics 2011 Mar 7;11(6):1031-6. Epub 2011 Feb 7.

Medizinisches Proteom-Center, Ruhr-Universitaet Bochum, Bochum, Germany.

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http://dx.doi.org/10.1002/pmic.201000441DOI Listing
March 2011

mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms.

Methods Mol Biol 2011 ;696:161-77

Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany.

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http://dx.doi.org/10.1007/978-1-60761-987-1_10DOI Listing
February 2011

Human Brain Proteome Project - 12th HUPO BPP Workshop. 26 September 2009, Toronto, Canada.

Proteomics 2010 Jun;10(11):2071-3

Medizinisches Proteom-Center (MPC), Ruhr-Universität Bochum, Bochum, Germany.

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http://dx.doi.org/10.1002/pmic.201090042DOI Listing
June 2010

implementing data standards: a report on the HUPOPSI workshop September 2009, Toronto, Canada.

Proteomics 2010 May;10(10):1895-8

EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201090034DOI Listing
May 2010

Peek a peak: a glance at statistics for quantitative label-free proteomics.

Expert Rev Proteomics 2010 Apr;7(2):249-61

Ruhr-Universität Bochum, Zentrum für Klinische Forschung (ZKF 1), Universitätsstrasse 150, 44801 Bochum, Germany.

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http://dx.doi.org/10.1586/epr.09.107DOI Listing
April 2010

Using Laboratory Information Management Systems as central part of a proteomics data workflow.

Proteomics 2010 Mar;10(6):1230-49

Medizinisches Proteom-Center, Ruhr-Universitaet Bochum, Bochum, Germany.

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http://dx.doi.org/10.1002/pmic.200900420DOI Listing
March 2010

Proteomics data collection (ProDaC): publishing and collecting proteomics data sets in public repositories using standard formats.

Methods Mol Biol 2010 ;604:345-68

Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany.

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http://dx.doi.org/10.1007/978-1-60761-444-9_24DOI Listing
February 2010

Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.

Proteomics 2009 Jul;9(14):3626-9

Medizinisches Proteom-Center, Ruhr-Universitaet Bochum, D-44801 Bochum, Germany.

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http://dx.doi.org/10.1002/pmic.200900205DOI Listing
July 2009