Martin A Smith

Martin A Smith

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Martin A Smith

Martin A Smith

Publications by authors named "Martin A Smith"

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Accurate detection of mA RNA modifications in native RNA sequences.

Nat Commun 2019 Sep 9;10(1):4079. Epub 2019 Sep 9.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003, Barcelona, Spain.

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http://dx.doi.org/10.1038/s41467-019-11713-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6734003PMC
September 2019

SquiggleKit: A toolkit for manipulating nanopore signal data.

Bioinformatics 2019 Jul 23. Epub 2019 Jul 23.

Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW Australia.

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http://dx.doi.org/10.1093/bioinformatics/btz586DOI Listing
July 2019

Featherweight long read alignment using partitioned reference indexes.

Sci Rep 2019 Mar 13;9(1):4318. Epub 2019 Mar 13.

Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, 370 Victoria St, Darlinghurst, NSW, Australia.

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http://dx.doi.org/10.1038/s41598-019-40739-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6416333PMC
March 2019

Structural and Functional Annotation of Long Noncoding RNAs.

Methods Mol Biol 2017 ;1526:65-85

RNA Biology and Plasticity Laboratory, Garvan Institute of Medical Research, 384 Victoria St, Darlinghurst, NSW, 2010, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6613-4_4DOI Listing
January 2018

The RNA modification landscape in human disease.

RNA 2017 12 30;23(12):1754-1769. Epub 2017 Aug 30.

Garvan Institute of Medical Research, Darlinghurst, 2010 NSW, Australia.

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http://dx.doi.org/10.1261/rna.063503.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688997PMC
December 2017

DotAligner: identification and clustering of RNA structure motifs.

Genome Biol 2017 12 28;18(1):244. Epub 2017 Dec 28.

RNA Biology and Plasticity Group, Garvan Institute of Medical Research, 384 Victoria Street, Sydney, NSW 2010, Australia.

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https://genomebiology.biomedcentral.com/articles/10.1186/s13
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http://dx.doi.org/10.1186/s13059-017-1371-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747123PMC
December 2017

Knock-in model of Dravet syndrome reveals a constitutive and conditional reduction in sodium current.

J Neurophysiol 2014 Aug 7;112(4):903-12. Epub 2014 May 7.

Department of Developmental and Cell Biology, University of California, Irvine, California; Department of Anatomy and Neurobiology, University of California, Irvine, California;

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http://dx.doi.org/10.1152/jn.00135.2014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4122742PMC
August 2014

NGSANE: a lightweight production informatics framework for high-throughput data analysis.

Bioinformatics 2014 May 26;30(10):1471-2. Epub 2014 Jan 26.

Cancer Epigenetics Program, Cancer Research Division, Kinghorn Cancer Centre, Garvan Institute of Medical Research, RNA Biology and Plasticity Laboratory, Garvan Institute of Medical Research, St Vincent's Clinical School, University of NSW, Sydney 2010, Australia and Division of Computational Informatics, CSIRO, Sydney 2113, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btu036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016703PMC
May 2014

The dark matter rises: the expanding world of regulatory RNAs.

Essays Biochem 2013 ;54:1-16

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1042/bse0540001DOI Listing
April 2014

Widespread purifying selection on RNA structure in mammals.

Nucleic Acids Res 2013 Sep 11;41(17):8220-36. Epub 2013 Jul 11.

RNA Biology and Plasticity Laboratory, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst, Sydney, NSW 2010 Australia, Genomics and Computational Biology Division, Institute for Molecular Bioscience, 306 Carmody Rd, University of Queensland, Brisbane, 4067 Australia, Department of Structural and Computational Biology; and Center for Integrative Bioinformatics Vienna (CIBIV), Max F. Perutz Laboratories (MFPL), University of Vienna, Medical University of Vienna, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria, Bioinformatics Group, Department of Computer Science; and Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstrasse 16-18, D-04107 Leipzig, Germany, Max Planck Institute for Mathematics in the Sciences, Inselstraße 22, D-04103 Leipzig, Germany, Center for Non-coding RNA in Technology and Health, Department of Basic Veterinary and Animal Sciences, Faculty of Life Sciences University of Copenhagen, Grønnegårdsvej 3, 1870 Frederiksberg C Denmark, Santa Fe Institute, 1399 Hyde Park Rd, Santa Fe, NM 87501, USA and St Vincent's Clinical School, University of New South Wales, Level 5, de Lacy, Victoria St, St Vincent's Hospital, Sydney, NSW 2010 Australia.

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http://dx.doi.org/10.1093/nar/gkt596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3783177PMC
September 2013

The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion.

Cancer Res 2011 Jun 10;71(11):3852-62. Epub 2011 May 10.

Sanford Burnham Medical Research Institute, Orlando, Florida 32827, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-4460DOI Listing
June 2011

Agrin regulation of alpha3 sodium-potassium ATPase activity modulates cardiac myocyte contraction.

J Biol Chem 2009 Jun 16;284(25):16956-65. Epub 2009 Apr 16.

Department of Anatomy and Neurobiology, University of California, Irvine, California 92697, USA.

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http://dx.doi.org/10.1074/jbc.M806855200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719333PMC
June 2009

Preparation of dissociated mouse cortical neuron cultures.

J Vis Exp 2007 19(10):562. Epub 2007 Dec 19.

Department of Anatomy and Neurobiology, University of California, Irvine, USA.

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http://dx.doi.org/10.3791/562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2557074PMC
February 2009

Ultrastructural analysis of chemical synapses and gap junctions between Drosophila brain neurons in culture.

Dev Neurobiol 2008 Feb;68(3):281-94

Department of Anatomy and Neurobiology, University of California, Irvine, California 92697-1280, USA.

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http://dx.doi.org/10.1002/dneu.20575DOI Listing
February 2008

Alpha3Na+/K+-ATPase is a neuronal receptor for agrin.

Cell 2006 Apr;125(2):359-69

Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, CA 92697, USA.

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http://dx.doi.org/10.1016/j.cell.2006.01.052DOI Listing
April 2006

Clonal expansion of IgA-positive plasma cells and axon-reactive antibodies in MS lesions.

J Neuroimmunol 2005 Oct;167(1-2):120-30

Department of Neurology, University of California, Irvine, 100 Irvine Hall, Irvine, CA 92697-4275, USA.

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http://dx.doi.org/10.1016/j.jneuroim.2005.05.006DOI Listing
October 2005

Agrin signaling in cortical neurons is mediated by a tyrosine kinase-dependent increase in intracellular Ca2+ that engages both CaMKII and MAPK signal pathways.

J Neurobiol 2004 Dec;61(3):289-300

Department of Anatomy and Neurobiology, University of California, Irvine Hall, Rm 110, Irvine, California 92697, USA.

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http://doi.wiley.com/10.1002/neu.20049
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http://dx.doi.org/10.1002/neu.20049DOI Listing
December 2004

Health visiting: the public health role.

Authors:
Martin A Smith

J Adv Nurs 2004 Jan;45(1):17-25

East Lancashire Public Health Network, Accrington, Lancashire, UK.

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http://dx.doi.org/10.1046/j.1365-2648.2003.02856.xDOI Listing
January 2004

Colonic metabolism of dietary polyphenols: influence of structure on microbial fermentation products.

Free Radic Biol Med 2004 Jan;36(2):212-25

Antioxidant Research Group, Wolfson Centre for Age-Related Diseases, School of Biomedical Sciences, King's College London, SE1 9RT, London, UK.

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http://dx.doi.org/10.1016/j.freeradbiomed.2003.09.022DOI Listing
January 2004

Mechanistic insight into the lanthanide(III) salt catalysed monoacylation of symmetrical diols from structural models.

Chem Commun (Camb) 2003 Oct(20):2588-9

School of Chemistry, University of Nottingham, University Park, Nottingham, UK NG7 2RD.

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http://dx.doi.org/10.1039/b308171kDOI Listing
October 2003

The COOH-terminal domain of agrin signals via a synaptic receptor in central nervous system neurons.

J Cell Biol 2003 Jun;161(5):923-32

Department of Anatomy and Neurobiology, University of California, Irvine, 92697, USA.

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http://dx.doi.org/10.1083/jcb.200301013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2172957PMC
June 2003

Agrin in the CNS: a protein in search of a function?

Neuroreport 2002 Aug;13(12):1485-95

Department of Anatomy and Neurobiology, University of California, Irvine 92697, USA.

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http://dx.doi.org/10.1097/00001756-200208270-00001DOI Listing
August 2002

A one-step procedure for the monoacylation of symmetrical 1,2-diols.

J Org Chem 2002 Jul;67(15):5226-31

School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, UK.

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http://dx.doi.org/10.1021/jo0257041DOI Listing
July 2002

Agrin regulates neuronal responses to excitatory neurotransmitters in vitro and in vivo.

Mol Cell Neurosci 2002 Jan;19(1):97-110

Department of Anatomy and Neurobiology, University of California at Irvine, Irvine, California 92697, USA.

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http://dx.doi.org/10.1006/mcne.2001.1056DOI Listing
January 2002