Marta Gut

Marta Gut

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Assembly and Annotation of the Larval Transcriptome of Two Spadefoot Toads Widely Divergent in Developmental Rate.

G3 (Bethesda) 2019 08 8;9(8):2647-2655. Epub 2019 Aug 8.

Ecology, Evolution and Development Group, Doñana Biological Station (CSIC), Seville 41092, Spain,

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http://dx.doi.org/10.1534/g3.119.400389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686947PMC
August 2019

Patient-Specific iPSC-Derived Astrocytes Contribute to Non-Cell-Autonomous Neurodegeneration in Parkinson's Disease.

Stem Cell Reports 2019 Feb 10;12(2):213-229. Epub 2019 Jan 10.

Department of Pathology and Experimental Therapeutics, Bellvitge University Hospital-IDIBELL, Hospitalet de Llobregat, Barcelona 08908, Spain; Institute of Biomedicine of the University of Barcelona (IBUB), Barcelona 08028, Spain; Department of Molecular and Translational Medicine, University of Brescia, Brescia 25121, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2018.12.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372974PMC
February 2019

Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.

Eur Urol 2019 01 21;75(1):11-15. Epub 2018 Sep 21.

CeRePP, Paris, France; Sorbonne Université, GRC n(∘)5, ONCOTYPE-URO, Paris, France; Assistance Publique Hôpitaux de Paris, Department of Urology, Academic Hospital Paris Est, Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.eururo.2018.08.026DOI Listing
January 2019

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.

Cell Stem Cell 2018 11 13;23(5):727-741.e9. Epub 2018 Sep 13.

Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Barcelona 08003, Spain; Universitat Pompeu Fabra (UPF), Barcelona 08003, Spain. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19345909183040
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http://dx.doi.org/10.1016/j.stem.2018.08.016DOI Listing
November 2018

The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability.

Genome Biol Evol 2018 08 1;10(8):1956-1969. Epub 2018 Aug 1.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, i Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Spain.

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http://dx.doi.org/10.1093/gbe/evy135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101566PMC
August 2018

bigSCale: an analytical framework for big-scale single-cell data.

Genome Res 2018 06 3;28(6):878-890. Epub 2018 May 3.

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.

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http://dx.doi.org/10.1101/gr.230771.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991513PMC
June 2018

Loss of function mutations in EPHB4 are responsible for vein of Galen aneurysmal malformation.

Brain 2018 04;141(4):979-988

Institut National de la Santé et de la Recherche Médicale (Inserm) UMR-1169 and University Paris Sud, Le Kremlin Bicêtre, 94276, France.

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http://dx.doi.org/10.1093/brain/awy020DOI Listing
April 2018

Biallelic mutation of UNC50, encoding a protein involved in AChR trafficking, is responsible for arthrogryposis.

Hum Mol Genet 2017 10;26(20):3989-3994

Institut National de la Santé et de la Recherche Médicale (Inserm) UMR-1169, Université Paris Sud, 94276 Le Kremlin Bicêtre, France.

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http://dx.doi.org/10.1093/hmg/ddx288DOI Listing
October 2017

Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.

Sci Rep 2017 09 8;7(1):11025. Epub 2017 Sep 8.

Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1038/s41598-017-11466-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5591225PMC
September 2017

Mitochondrial Complex I Is a Global Regulator of Secondary Metabolism, Virulence and Azole Sensitivity in Fungi.

PLoS One 2016 20;11(7):e0158724. Epub 2016 Jul 20.

Manchester Fungal Infection Group, Institute of Inflammation and Repair, Faculty of Medicine and Human Sciences, University of Manchester, 2.24 Core technology Building, Grafton St., Manchester, M13 9NT, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158724PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4954691PMC
July 2017

Mex3a Marks a Slowly Dividing Subpopulation of Lgr5+ Intestinal Stem Cells.

Cell Stem Cell 2017 06 9;20(6):801-816.e7. Epub 2017 Mar 9.

Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluís Companys 23, 08010 Barcelona, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2017.02.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5774992PMC
June 2017

In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites.

Genome Res 2017 04 23;27(4):580-590. Epub 2017 Mar 23.

Institut de Génétique Humaine UMR9002 CNRS-Université de Montpellier, 34396 Montpellier Cedex 05, France.

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http://dx.doi.org/10.1101/gr.217240.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378176PMC
April 2017

From Wet-Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing.

Hum Mutat 2016 12 26;37(12):1263-1271. Epub 2016 Sep 26.

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.

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http://dx.doi.org/10.1002/humu.23114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5129537PMC
December 2016

Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions.

Rice (N Y) 2016 Dec 20;9(1):58. Epub 2016 Oct 20.

Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias, Carretera CV 315 Km 10,7 (Carretera Moncada - Náquera Km 4.5), 46113, Moncada, Spain.

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http://dx.doi.org/10.1186/s12284-016-0130-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073090PMC
December 2016

Chimpanzee genomic diversity reveals ancient admixture with bonobos.

Science 2016 10 27;354(6311):477-481. Epub 2016 Oct 27.

Institut de Biologia Evolutiva (Consejo Superior de Investigaciones Científicas-Universitat Pompeu Fabra), Barcelona Biomedical Research Park, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain. National Centre for Genomic Analysis-Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 08028 Barcelona, Spain. Institucio Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia 08010, Spain.

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http://dx.doi.org/10.1126/science.aag2602DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546212PMC
October 2016

PRKG1 and genetic diagnosis of early-onset thoracic aortic disease.

Eur J Clin Invest 2016 Sep 18;46(9):787-94. Epub 2016 Aug 18.

Xenética de Enfermidades Cardiovasculares e Oftalmolóxicas, Instituto de Investigación Sanitaria de Santiago de Compostela, Complexo Hospitalario Universitario de Santiago de Compostela, Santiago de Compostela, A Coruña, Spain.

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http://dx.doi.org/10.1111/eci.12662DOI Listing
September 2016

Somatic Embryonic FGFR2 Mutations in Keratinocytic Epidermal Nevi.

J Invest Dermatol 2016 08 19;136(8):1718-1721. Epub 2016 Apr 19.

Department of Dermatology, Parc de Salut Mar, Hospital del Mar, Barcelona, Spain; Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.jid.2016.03.040DOI Listing
August 2016

Saturation analysis for whole-genome bisulfite sequencing data.

Nat Biotechnol 2016 07 27;34(7):691-693. Epub 2016 Jun 27.

Medical Genomics, UCL Cancer Institute, University College London, London, UK.

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http://dx.doi.org/10.1038/nbt.3524DOI Listing
July 2016

MetaTrans: an open-source pipeline for metatranscriptomics.

Sci Rep 2016 05 23;6:26447. Epub 2016 May 23.

Digestive Research Unit, Vall d'Hebron Research Institute, Barcelona, 08035, Spain.

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http://dx.doi.org/10.1038/srep26447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876386PMC
May 2016

RNA sequencing validation of the Complexity INdex in SARComas prognostic signature.

Eur J Cancer 2016 Apr 23;57:104-11. Epub 2016 Feb 23.

Inserm U916, Institut Bergonié, Bordeaux, France; Département de pathologie, Institut Bergonié, Bordeaux, France. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2015.12.027DOI Listing
April 2016

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncomms10001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682041PMC
December 2015

Exome Sequencing Reveals AMER1 as a Frequently Mutated Gene in Colorectal Cancer.

Clin Cancer Res 2015 Oct 12;21(20):4709-18. Epub 2015 Jun 12.

Unit of Biomarkers and Susceptibility, Catalan Institute of Oncology (ICO), Bellvitge Biomedical Research Institute (IDIBELL) and CIBERESP, L'Hospitalet de Llobregat, Barcelona, Spain. Department of Clinical Sciences, Faculty of Medicine, University of Barcelona (UB), Barcelona, Spain.

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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-15-0159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4609254PMC
October 2015

Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses.

BMC Genomics 2015 Oct 9;16:764. Epub 2015 Oct 9.

Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover, Bünteweg 17p, 30559, Hannover, Germany.

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http://dx.doi.org/10.1186/s12864-015-1977-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4600213PMC
October 2015

Genomic characterization of mutant laboratory mouse strains by exome sequencing and annotation lift-over.

BMC Genomics 2015 May 6;16:351. Epub 2015 May 6.

Centro Nacional de Análisis Genómico, Parc Científic de Barcelona - Torre I, Baldiri Reixac, 4, 08028, Barcelona, Spain.

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http://dx.doi.org/10.1186/s12864-015-1548-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4422528PMC
May 2015

Transcription-dependent generation of a specialized chromatin structure at the TCRβ locus.

J Immunol 2015 Apr 2;194(7):3432-43. Epub 2015 Mar 2.

Centre d'Immunologie de Marseille-Luminy, Aix-Marseille University, UM2, 13288 Marseille, France; INSERM, U1104, 13288 Marseille, France; Centre National de la Recherche Scientifique, UMR7280, F-13009 Marseille, France; INSERM U1090, Technological Advances for Genomics and Clinics, F-13009 Marseille, France; Aix-Marseille University, UMR-S 1090, Technological Advances for Genomics and Clinics, F-13009 Marseille, France;

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http://www.jimmunol.org/lookup/doi/10.4049/jimmunol.1400789
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http://dx.doi.org/10.4049/jimmunol.1400789DOI Listing
April 2015

Variation in genomic landscape of clear cell renal cell carcinoma across Europe.

Nat Commun 2014 Oct 29;5:5135. Epub 2014 Oct 29.

1] Department of Human Genetics, McGill University, 1205 Dr Penfield Avenue, Montreal, Quebec, Canada H3A 1B1 [2] Fondation Jean Dausset - Centre d'Etude du Polymorphisme Humain, 27 rue Juliette Dodu, 75010 Paris, France [3] Centre National de Génotypage, CEA - Institute de Génomique, 2 rue Gaston Crémieux, 91000 Evry, France.

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http://dx.doi.org/10.1038/ncomms6135DOI Listing
October 2014

Gibbon genome and the fast karyotype evolution of small apes.

Nature 2014 Sep;513(7517):195-201

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249732PMC
September 2014

Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication.

BMC Genomics 2014 Jul 4;15:562. Epub 2014 Jul 4.

Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover, Bünteweg 17p, 30559 Hannover, Germany.

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http://dx.doi.org/10.1186/1471-2164-15-562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4097168PMC
July 2014

Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells.

Elife 2014 May 9;3:e02105. Epub 2014 May 9.

Centre d'Immunologie de Marseille-Luminy, Université Aix-Marseille, Marseille, France Centre National de la Recherche Scientifique (CNRS) UMR6102, Marseille, France Inserm U631, Marseille, France Institut de Génétique Moléculaire de Montpellier (IGMM), CNRS-UMR5535, Montpellier, France

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http://dx.doi.org/10.7554/eLife.02105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4042876PMC
May 2014

Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells.

Cell Stem Cell 2013 Sep 11;13(3):360-9. Epub 2013 Jul 11.

Department of Molecular Biology, Faculty of Science, Nijmegen Centre for Molecular Life Sciences NCMLS, Radboud University, 6525GA, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1016/j.stem.2013.06.002DOI Listing
September 2013

Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification.

Proc Natl Acad Sci U S A 2013 Jul 17;110(27):11079-84. Epub 2013 Jun 17.

RNA Biology Laboratory, Department of Biology and Centre for Environmental and Marine Studies, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1073/pnas.1302094110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704024PMC
July 2013

Great ape genetic diversity and population history.

Nature 2013 Jul 3;499(7459):471-5. Epub 2013 Jul 3.

Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain.

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http://dx.doi.org/10.1038/nature12228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3822165PMC
July 2013

Substitution at IL1RN and deletion at SLC4A11 segregating with phenotype in familial keratoconus.

Invest Ophthalmol Vis Sci 2013 Mar 1;54(3):2207-15. Epub 2013 Mar 1.

Institute of Human Genetics, Polish Academy of Sciences, Poznan, Poland.

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http://dx.doi.org/10.1167/iovs.13-11592DOI Listing
March 2013

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

Nat Struct Mol Biol 2011 Jul 17;18(8):956-63. Epub 2011 Jul 17.

Centre d'Immunologie de Marseille-Luminy, Université Aix-Marseille, Campus de Luminy, Marseille, France.

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http://dx.doi.org/10.1038/nsmb.2085DOI Listing
July 2011

Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36.

Nat Struct Mol Biol 2011 Jul 26;18(9):977-83. Epub 2011 Jul 26.

Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal.

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http://dx.doi.org/10.1038/nsmb.2123DOI Listing
July 2011

Unusual regulation of a STAT protein by an SLC6 family transporter in C. elegans epidermal innate immunity.

Cell Host Microbe 2011 May;9(5):425-35

Centre d'Immunologie de Marseille-Luminy, Université de la Méditerranée, Case 906, 13288 Marseille, France.

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http://dx.doi.org/10.1016/j.chom.2011.04.011DOI Listing
May 2011