Markus Riester

Markus Riester

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Markus Riester

Markus Riester

Publications by authors named "Markus Riester"

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36Publications

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Distance in cancer gene expression from stem cells predicts patient survival.

PLoS One 2017 23;12(3):e0173589. Epub 2017 Mar 23.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, and Department of Biostatistics, Harvard School of Public Health, Boston, MA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0173589PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363813PMC
August 2017

Meta-Analysis in Gene Expression Studies.

Methods Mol Biol 2016 ;1418:161-76

Novartis Institutes for BioMedical Research (NIBR), 250 Massachusetts Avenue, Cambridge, MA, 02139, USA.

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http://dx.doi.org/10.1007/978-1-4939-3578-9_8DOI Listing
December 2016

The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles.

J Natl Cancer Inst 2016 11 5;108(11). Epub 2016 Jul 5.

Affiliations of authors: City University of New York School of Public Health, New York, NY (LW, MRa); Novartis Institutes for BioMedical Research, Cambridge, MA (MRi); Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute/Harvard Medical School, Boston, MA (GP); Center for Cancer Research, Massachusetts General Hospital, Boston, MA (MB).

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http://dx.doi.org/10.1093/jnci/djw146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5241903PMC
November 2016

Molecular Alterations and Everolimus Efficacy in Human Epidermal Growth Factor Receptor 2-Overexpressing Metastatic Breast Cancers: Combined Exploratory Biomarker Analysis From BOLERO-1 and BOLERO-3.

J Clin Oncol 2016 06 18;34(18):2115-24. Epub 2016 Apr 18.

Fabrice André, Institut Gustav Roussy, INSERM Unit U981, Université Paris Sud, Villejuif, France; Sara Hurvitz and Dennis Slamon, University of California, Los Angeles, Los Angeles, CA; Angelica Fasolo, San Raffaele Scientific Institute, Milan, Italy; Ling-Ming Tseng, National Yang Ming University, Taipei, Taiwan; Guy Jerusalem, University of Liège, Liege, Belgium; Sharon Wilks, Cancer Care Center of South Texas, San Antonio, TX; Ruth O'Regan, University of Wisconsin Carbone Cancer Center, Madison, WI; Claudine Isaacs, Georgetown University, Washington DC; Masakazu Toi, Kyoto University, Sakyo-ku, Kyoto, Japan; Howard Burris, Sarah Cannon Research Institute, Nashville, TN; Wei He, Douglas Robinson, and Markus Riester, Novartis Institutes for BioMedical Research, Cambridge, MA; and Tetiana Taran and David Chen, Novartis Pharmaceuticals Corporation, East Hanover, NJ.

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http://dx.doi.org/10.1200/JCO.2015.63.9161DOI Listing
June 2016

Molecular analysis of a male breast cancer patient with prolonged stable disease under mTOR/PI3K inhibitors BEZ235/everolimus.

Cold Spring Harb Mol Case Stud 2016 Mar;2(2):a000620

Medical Oncology Unit, Azienda Ospedaliera Universitaria Integrata, 37126 Verona, Italy;; Comprehensive Cancer Center, Azienda Ospedaliera Universitaria Integrata, 37126 Verona, Italy;; Digestive Molecular Clinical Oncology Research Unit, Department of Medicine, Università degli studi di Verona, 37134 Verona, Italy.

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http://dx.doi.org/10.1101/mcs.a000620DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849849PMC
March 2016

An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer.

PLoS Comput Biol 2015 Sep 17;11(9):e1004350. Epub 2015 Sep 17.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, and Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575033PMC
September 2015

Molecular subtypes of high-grade serous ovarian cancer: the holy grail?

J Natl Cancer Inst 2014 Oct 30;106(10). Epub 2014 Sep 30.

City University of New York School of Public Health, Hunter College, New York, NY (LW); Novartis Institutes for BioMedical Research, Cambridge, MA (MR); Center for Cancer Research, Massachusetts General Hospital, Boston, MA (MB).

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http://dx.doi.org/10.1093/jnci/dju297DOI Listing
October 2014

Most human non-GCIMP glioblastoma subtypes evolve from a common proneural-like precursor glioma.

Cancer Cell 2014 Aug;26(2):288-300

Division of Human Biology and Solid Tumor Translational Research, Fred Hutchinson Cancer Research Center, Department of Neurosurgery and Alvord Brain Tumor Center, University of Washington, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccr.2014.06.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143139PMC
August 2014

Cross-study validation for the assessment of prediction algorithms.

Bioinformatics 2014 Jun;30(12):i105-12

Leibniz Supercomputing Center, Garching, Department for Medical Informatics, Biometry and Epidemiology, Munich, Germany, Cambridge, MA, Dana-Farber Cancer Institute, Boston, Harvard School of Public Health, Boston, USA and City University of New York School of Public Health, Hunter College, New York, USALeibniz Supercomputing Center, Garching, Department for Medical Informatics, Biometry and Epidemiology, Munich, Germany, Cambridge, MA, Dana-Farber Cancer Institute, Boston, Harvard School of Public Health, Boston, USA and City University of New York School of Public Health, Hunter College, New York, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058929PMC
June 2014

Integrative analysis of 1q23.3 copy-number gain in metastatic urothelial carcinoma.

Clin Cancer Res 2014 Apr 31;20(7):1873-83. Epub 2014 Jan 31.

Authors' Affiliations: Departments of Biostatistics and Computational Biology, and Medical Oncology; Center for Molecular Oncologic Pathology, Dana-Farber Cancer Institute; Department of Biostatistics, Harvard School of Public Health; Department of Pathology; Translational Medicine Division, Brigham and Women's Hospital, Boston; Broad Institute of Harvard and MIT, Cambridge, Massachusetts; Sidney Kimmel Cancer Center; Department of Pathology, Johns Hopkins University, Baltimore, Maryland; Department of Urology, Memorial Sloan-Kettering Cancer Center, New York, New York; and Hospital del Mar Research Institute-IMIM, Barcelona; and Hospital Parc Tauli, Sabadell, Spain.

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http://dx.doi.org/10.1158/1078-0432.CCR-13-0759DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3975677PMC
April 2014

Comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer.

J Natl Cancer Inst 2014 Apr 3;106(5). Epub 2014 Apr 3.

Affiliations of authors: City University of New York School of Public Health, Hunter College, New York, NY (LW); Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA (LW, AC, MR, JD, XVW, ST, TR, BG, GP); Department of Biostatistics, Harvard School of Public Health, Boston, MA (LW, AC, CH, GP); Center for Cancer Research, Massachusetts General Hospital, Boston, MA (MB); Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada (BH); Medical Biophysics Department, University of Toronto, Toronto, Ontario, Canada (BH);Institute for Medical Information Sciences, Biometry, and Epidemiology, LMU Munich, Munich, Germany (CB).

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http://dx.doi.org/10.1093/jnci/dju049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4580554PMC
April 2014

Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples.

J Natl Cancer Inst 2014 Apr 3;106(5). Epub 2014 Apr 3.

Affiliations of authors: Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA (MR, ACC, LT, FM, CH, GP); Department of Biostatistics, Harvard School of Public Health, Boston, MA (MR, ACC, LT, FM, CH, GP); Center for Cancer Research (WW, S-hK, MB) and Department of Pathology (EO), Massachusetts General Hospital, Boston, MA; City University of New York School of Public Health, Hunter College, New York, NY (LW); Sung-hoon Kim, Yonsei University College of Medicine, Seoul, Korea (S-HK).

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http://dx.doi.org/10.1093/jnci/dju048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4580556PMC
April 2014

Evolution of the cancer genome.

Trends Genet 2012 Apr 16;28(4):155-63. Epub 2012 Feb 16.

Department of Biostatistics and Computational Biology, Harvard School of Public Health, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.tig.2012.01.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711268PMC
April 2012

Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer.

Clin Cancer Res 2012 Mar 6;18(5):1323-33. Epub 2012 Jan 6.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-2271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569085PMC
March 2012

Reconstruction of pedigrees in clonal plant populations.

Theor Popul Biol 2010 Sep 23;78(2):109-17. Epub 2010 May 23.

Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstrasse 16-18, D-04107 Leipzig, Germany.

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https://www.bioinf.uni-leipzig.de/Publications/PREPRINTS/10-
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http://linkinghub.elsevier.com/retrieve/pii/S004058091000045
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http://dx.doi.org/10.1016/j.tpb.2010.05.002DOI Listing
September 2010

A differentiation-based phylogeny of cancer subtypes.

PLoS Comput Biol 2010 May 6;6(5):e1000777. Epub 2010 May 6.

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA.

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http://dx.doi.org/10.1371/journal.pcbi.1000777DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2865519PMC
May 2010

FRANz: reconstruction of wild multi-generation pedigrees.

Bioinformatics 2009 Aug 8;25(16):2134-9. Epub 2009 Feb 8.

Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstrasse 16-18, D-04107 Leipzig, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btp064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2722992PMC
August 2009

Highly specific gene silencing by artificial microRNAs in Arabidopsis.

Plant Cell 2006 May 10;18(5):1121-33. Epub 2006 Mar 10.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.

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http://www.plantcell.org/content/18/5/1121.full.pdf+html
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http://www.plantcell.org/cgi/doi/10.1105/tpc.105.039834
Publisher Site
http://dx.doi.org/10.1105/tpc.105.039834DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456875PMC
May 2006

Specific effects of microRNAs on the plant transcriptome.

Dev Cell 2005 Apr;8(4):517-27

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1016/j.devcel.2005.01.018DOI Listing
April 2005