Mark J Dickman

Mark J Dickman

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Mark J Dickman

Publications by authors named "Mark J Dickman"

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Depletion of the FtsH1/3 Proteolytic Complex Suppresses the Nutrient Stress Response in the Cyanobacterium sp strain PCC 6803.

Plant Cell 2019 12 15;31(12):2912-2928. Epub 2019 Oct 15.

Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, 379 81, Czech Republic.

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http://dx.doi.org/10.1105/tpc.19.00411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6925008PMC
December 2019

Proteorhodopsin Overproduction Enhances the Long-Term Viability of Escherichia coli.

Appl Environ Microbiol 2019 Dec 13;86(1). Epub 2019 Dec 13.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom.

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http://dx.doi.org/10.1128/AEM.02087-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6912077PMC
December 2019

Correction: Analysis of long dsRNA produced in vitro and in vivo using atomic force microscopy in conjunction with ion-pair reverse-phase HPLC.

Analyst 2019 11 16;144(22):6773. Epub 2019 Oct 16.

Department of Chemical and Biological Engineering, Mappin Street, University of Sheffield, S1 3JD, UK.

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http://dx.doi.org/10.1039/c9an90100kDOI Listing
November 2019

Analysis of long dsRNA produced in vitro and in vivo using atomic force microscopy in conjunction with ion-pair reverse-phase HPLC.

Analyst 2019 Aug;144(16):4985-4994

Department of Chemical and Biological Engineering, Mappin Street, University of Sheffield, S1 3JD, UK.

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http://dx.doi.org/10.1039/c9an00954jDOI Listing
August 2019

The ChlD subunit links the motor and porphyrin binding subunits of magnesium chelatase.

Biochem J 2019 Jul 2;476(13):1875-1887. Epub 2019 Jul 2.

Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, U.K.

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http://dx.doi.org/10.1042/BCJ20190095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6604950PMC
July 2019

Proteins that physically interact with the phosphatase Cdc14 in Candida albicans have diverse roles in the cell cycle.

Sci Rep 2019 Apr 18;9(1):6258. Epub 2019 Apr 18.

Department of Molecular Biology and Biotechnology, University of Sheffield, S10 2TN, Sheffield, UK.

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http://dx.doi.org/10.1038/s41598-019-42530-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472416PMC
April 2019

High resolution fingerprinting of single and double-stranded RNA using ion-pair reverse-phase chromatography.

J Chromatogr B Analyt Technol Biomed Life Sci 2019 Jan 28;1104:212-219. Epub 2018 Nov 28.

Department of Chemical and Biological Engineering, Mappin Street, University of Sheffield, S1 3JD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jchromb.2018.11.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329874PMC
January 2019

UCHL3 Regulates Topoisomerase-Induced Chromosomal Break Repair by Controlling TDP1 Proteostasis.

Cell Rep 2018 06;23(11):3352-3365

Krebs Institute, Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, S10 2TN Sheffield, UK; Center for Genomics, Helmy Institute, Zewail City of Science and Technology, Giza, Egypt. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.05.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019701PMC
June 2018

Quantification of dsRNA using stable isotope labeling dilution liquid chromatography/mass spectrometry.

Rapid Commun Mass Spectrom 2018 Apr;32(7):590-596

Department of Chemical and Biological Engineering, Mappin Street, University of Sheffield, Sheffield, S1 3JD, UK.

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http://dx.doi.org/10.1002/rcm.8074DOI Listing
April 2018

Quantitative Proteomic Analysis in Candida albicans Using SILAC-Based Mass Spectrometry.

Proteomics 2018 03 20;18(5-6):e1700278. Epub 2018 Feb 20.

ChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, UK.

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http://dx.doi.org/10.1002/pmic.201700278DOI Listing
March 2018

Identification of protein W, the elusive sixth subunit of the Rhodopseudomonas palustris reaction center-light harvesting 1 core complex.

Biochim Biophys Acta Bioenerg 2018 Feb 7;1859(2):119-128. Epub 2017 Nov 7.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK. Electronic address:

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http://dx.doi.org/10.1016/j.bbabio.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5764122PMC
February 2018

PufQ regulates porphyrin flux at the haem/bacteriochlorophyll branchpoint of tetrapyrrole biosynthesis via interactions with ferrochelatase.

Mol Microbiol 2017 Dec 17;106(6):961-975. Epub 2017 Nov 17.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, UK.

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http://dx.doi.org/10.1111/mmi.13861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5725709PMC
December 2017

Accurate Quantification of Nucleic Acids Using Hypochromicity Measurements in Conjunction with UV Spectrophotometry.

Anal Chem 2017 12 5;89(24):13567-13574. Epub 2017 Dec 5.

Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield , Mappin Street, Sheffield S1 3JD, U.K.

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http://dx.doi.org/10.1021/acs.analchem.7b04000DOI Listing
December 2017

Purification and characterisation of dsRNA using ion pair reverse phase chromatography and mass spectrometry.

J Chromatogr A 2017 Feb 21;1484:14-25. Epub 2016 Dec 21.

Department of Chemical and Biological Engineering, ChELSI Institute, Mappin Street, University of Sheffield, S1 3JD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.chroma.2016.12.062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267946PMC
February 2017

RNASwift: A rapid, versatile RNA extraction method free from phenol and chloroform.

Anal Biochem 2016 11 3;512:36-46. Epub 2016 Aug 3.

Department of Chemical and Biological Engineering, ChELSI Institute, Mappin Street, University of Sheffield, S1 3JD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2016.08.001DOI Listing
November 2016

The therapeutic potential of epigenetic manipulation during infectious diseases.

Pharmacol Ther 2016 11 9;167:85-99. Epub 2016 Aug 9.

Department of Infection and Immunity, University of Sheffield Medical School, UK; Sheffield Teaching Hospitals, UK. Electronic address:

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http://dx.doi.org/10.1016/j.pharmthera.2016.07.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5109899PMC
November 2016

Biosynthesis of Chlorophyll a in a Purple Bacterial Phototroph and Assembly into a Plant Chlorophyll-Protein Complex.

ACS Synth Biol 2016 09 24;5(9):948-54. Epub 2016 May 24.

Department of Molecular Biology and Biotechnology, University of Sheffield , Sheffield S10 2TN, U.K.

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http://dx.doi.org/10.1021/acssynbio.6b00069DOI Listing
September 2016

Analysis of histone post translational modifications in primary monocyte derived macrophages using reverse phase×reverse phase chromatography in conjunction with porous graphitic carbon stationary phase.

J Chromatogr A 2016 Jul 7;1453:43-53. Epub 2016 May 7.

Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Mappin Street, Sheffield S1 3JD, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.chroma.2016.05.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4906248PMC
July 2016

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina.

J Bacteriol 2016 May 14;198(9):1393-400. Epub 2016 Apr 14.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom

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http://dx.doi.org/10.1128/JB.00925-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836224PMC
May 2016

Nucleic acid separations using superficially porous silica particles.

J Chromatogr A 2016 Apr 23;1440:135-144. Epub 2016 Feb 23.

Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Mappin Street, Sheffield S1 3JD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.chroma.2016.02.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801196PMC
April 2016

Analysis of crRNA Using Liquid Chromatography Electrospray Ionization Mass Spectrometry (LC ESI MS).

Methods Mol Biol 2015 ;1311:133-45

Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Mappin St, Sheffield, UK.

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http://dx.doi.org/10.1007/978-1-4939-2687-9_8DOI Listing
February 2016

PucC and LhaA direct efficient assembly of the light-harvesting complexes in Rhodobacter sphaeroides.

Mol Microbiol 2016 Jan 5;99(2):307-27. Epub 2015 Nov 5.

Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, UK.

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http://dx.doi.org/10.1111/mmi.13235DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4949548PMC
January 2016

Luzp4 defines a new mRNA export pathway in cancer cells.

Nucleic Acids Res 2015 Feb 6;43(4):2353-66. Epub 2015 Feb 6.

Department of Molecular Biology and Biotechnology, The University of Sheffield, Firth Court, Western Bank, Sheffield, UK

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http://dx.doi.org/10.1093/nar/gkv070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344508PMC
February 2015

Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus.

Mol Cell 2014 Nov 6;56(4):506-17. Epub 2014 Nov 6.

Department of Protein-DNA Interactions, Institute of Biotechnology, Vilnius University, Graiciuno 8, Vilnius 02241, Lithuania. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2014.09.027DOI Listing
November 2014

Integration of energy and electron transfer processes in the photosynthetic membrane of Rhodobacter sphaeroides.

Biochim Biophys Acta 2014 Oct 13;1837(10):1769-80. Epub 2014 Feb 13.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, UK. Electronic address:

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http://dx.doi.org/10.1016/j.bbabio.2014.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143486PMC
October 2014

Aberrant assembly complexes of the reaction center light-harvesting 1 PufX (RC-LH1-PufX) core complex of Rhodobacter sphaeroides imaged by atomic force microscopy.

J Biol Chem 2014 Oct 5;289(43):29927-36. Epub 2014 Sep 5.

From the Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom and

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http://www.jbc.org/lookup/doi/10.1074/jbc.M114.596585
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http://dx.doi.org/10.1074/jbc.M114.596585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208002PMC
October 2014

Sequestration of multiple RNA recognition motif-containing proteins by C9orf72 repeat expansions.

Brain 2014 Jul 27;137(Pt 7):2040-51. Epub 2014 May 27.

1 Sheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, 385A Glossop Road, Sheffield S10 2HQ, UK

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http://dx.doi.org/10.1093/brain/awu120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065024PMC
July 2014

A cyanobacterial chlorophyll synthase-HliD complex associates with the Ycf39 protein and the YidC/Alb3 insertase.

Plant Cell 2014 Mar 28;26(3):1267-79. Epub 2014 Mar 28.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom.

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http://dx.doi.org/10.1105/tpc.114.124495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001383PMC
March 2014

Cofractionation of HMGB proteins with histone dimers.

Anal Biochem 2014 Feb 13;447:98-106. Epub 2013 Nov 13.

School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Liverpool L3 3AF, UK. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2013.11.001DOI Listing
February 2014

Three-dimensional structure of the Rhodobacter sphaeroides RC-LH1-PufX complex: dimerization and quinone channels promoted by PufX.

Biochemistry 2013 Oct 16;52(43):7575-85. Epub 2013 Oct 16.

Department of Molecular Biology and Biotechnology, University of Sheffield , Western Bank, Firth Court, Sheffield S10 2TN, United Kingdom.

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http://pubs.acs.org/doi/10.1021/bi4011946
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http://dx.doi.org/10.1021/bi4011946DOI Listing
October 2013

Extensive histone post-translational modification in honey bees.

Insect Biochem Mol Biol 2013 Feb 20;43(2):125-37. Epub 2012 Nov 20.

Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Mappin Street, Sheffield S1 3JD, United Kingdom.

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http://dx.doi.org/10.1016/j.ibmb.2012.11.003DOI Listing
February 2013

In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus.

EMBO J 2013 Feb 18;32(3):385-94. Epub 2013 Jan 18.

Department of Protein-DNA Interactions, Institute of Biotechnology, Vilnius University, Vilnius 02241, Lithuania.

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http://emboj.embopress.org/cgi/doi/10.1038/emboj.2012.352
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http://dx.doi.org/10.1038/emboj.2012.352DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3567492PMC
February 2013

Conserved chloroplast open-reading frame ycf54 is required for activity of the magnesium protoporphyrin monomethylester oxidative cyclase in Synechocystis PCC 6803.

J Biol Chem 2012 Aug 18;287(33):27823-33. Epub 2012 Jun 18.

Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, United Kingdom.

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http://dx.doi.org/10.1074/jbc.M112.352526DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431679PMC
August 2012

Quantitative proteomic analysis of intracytoplasmic membrane development in Rhodobacter sphaeroides.

Mol Microbiol 2012 Jun 24;84(6):1062-78. Epub 2012 May 24.

ChELSI Institute, Department of Chemical and Biological Engineering, University of Sheffield, Mappin Street, Sheffield S1 3JD, UK.

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http://dx.doi.org/10.1111/j.1365-2958.2012.08074.xDOI Listing
June 2012

Rapid resonance Raman microspectroscopy to probe carbon dioxide fixation by single cells in microbial communities.

ISME J 2012 Apr 24;6(4):875-85. Epub 2011 Nov 24.

Department of Civil and Structural Engineering, Kroto Research Institute, University of Sheffield, Sheffield, UK.

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http://dx.doi.org/10.1038/ismej.2011.150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3309358PMC
April 2012

Characterization and quantification of RNA post-transcriptional modifications using stable isotope labeling of RNA in conjunction with mass spectrometry analysis.

Anal Chem 2011 Jun 26;83(12):4894-901. Epub 2011 May 26.

Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Mappin Street, Sheffield, S3 1JD, UK.

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http://dx.doi.org/10.1021/ac200547yDOI Listing
June 2011

Arginine methylation of REF/ALY promotes efficient handover of mRNA to TAP/NXF1.

Nucleic Acids Res 2010 Jun 2;38(10):3351-61. Epub 2010 Feb 2.

Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, UK.

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http://dx.doi.org/10.1093/nar/gkq033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2879514PMC
June 2010

Analysis of arginine and lysine methylation utilizing peptide separations at neutral pH and electron transfer dissociation mass spectrometry.

J Am Soc Mass Spectrom 2010 Jan 20;21(1):88-96. Epub 2009 Sep 20.

Biological and Environmental Systems, Department of Chemical and Process Engineering, University of Sheffield, Sheffield, United Kingdom.

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http://link.springer.com/10.1016/j.jasms.2009.09.010
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http://dx.doi.org/10.1016/j.jasms.2009.09.010DOI Listing
January 2010

Studying the mechanism of RNA separations using RNA chromatography and its application in the analysis of ribosomal RNA and RNA:RNA interactions.

J Chromatogr A 2009 Feb 30;1216(9):1377-82. Epub 2008 Dec 30.

Biological and Environmental Systems, Department of Chemical and Process Engineering, University of Sheffield, Mappin Street, Sheffield S13JD, UK.

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http://dx.doi.org/10.1016/j.chroma.2008.12.077DOI Listing
February 2009

Characterization of post-translational modifications of the linker histones H1 and H5 from chicken erythrocytes using mass spectrometry.

J Proteome Res 2008 Oct 28;7(10):4326-35. Epub 2008 Aug 28.

School of Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, United Kingdom.

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http://pubs.acs.org/doi/abs/10.1021/pr800260a
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http://dx.doi.org/10.1021/pr800260aDOI Listing
October 2008

Small CRISPR RNAs guide antiviral defense in prokaryotes.

Science 2008 Aug;321(5891):960-4

Laboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, Netherlands.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1159689
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http://dx.doi.org/10.1126/science.1159689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5898235PMC
August 2008

Identification and characterization of sulfolobus solfataricus P2 proteome using multidimensional liquid phase protein separations.

J Proteome Res 2008 Jun 9;7(6):2253-61. Epub 2008 May 9.

Biological and Environmental Systems Group, Department of Chemical and Process Engineering, University of Sheffield, Mappin Street, Sheffield, S1 3JD, United Kingdom.

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http://dx.doi.org/10.1021/pr7006472DOI Listing
June 2008

Multidimensional liquid phase protein separations in conjunction with stable isotope labelling for quantitative proteomics.

Proteomics 2007 Nov;7(21):3826-34

Biological and Environmental Systems, Department of Chemical and Process Engineering, University of Sheffield, Sheffield, UK.

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http://dx.doi.org/10.1002/pmic.200700367DOI Listing
November 2007

Regulation of p73-mediated apoptosis by c-Jun N-terminal kinase.

Biochem J 2007 Aug;405(3):617-23

Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK.

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http://dx.doi.org/10.1042/BJ20061778DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2267308PMC
August 2007

Postcolumn nucleic acid intercalation for the fluorescent detection of nucleic acids using ion pair reverse phase high-performance liquid chromatography.

Authors:
Mark J Dickman

Anal Biochem 2007 Jan 18;360(2):282-7. Epub 2006 Oct 18.

Department of Chemical and Process Engineering, Biological and Environmental Systems, University of Sheffield, Sheffield S1 3JD, UK.

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http://dx.doi.org/10.1016/j.ab.2006.09.034DOI Listing
January 2007

Enrichment and analysis of RNA centered on ion pair reverse phase methodology.

RNA 2006 Apr 22;12(4):691-6. Epub 2006 Feb 22.

Biological and Environmental Systems Group, Department of Chemical and Process Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom.

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http://dx.doi.org/10.1261/rna.2278606DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1421089PMC
April 2006

Effects of sequence and structure in the separation of nucleic acids using ion pair reverse phase liquid chromatography.

Authors:
Mark J Dickman

J Chromatogr A 2005 May;1076(1-2):83-9

Biological and Environmental Systems Group, Department of Chemical and Process Engineering, University of Sheffield, Mappin Street, Sheffield S1 3JD, UK.

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http://dx.doi.org/10.1016/j.chroma.2005.04.018DOI Listing
May 2005

Rapid analysis of protein-nucleic acid complexes using MALDI TOF mass spectrometry and ion pair reverse phase liquid chromatography.

J Biochem Biophys Methods 2004 Jan;58(1):39-48

Department of Molecular Biology and Biotechnology, Krebs Institute, University of Sheffield, Western Bank, Sheffield S10 2TN, UK.

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http://dx.doi.org/10.1016/s0165-022x(03)00146-5DOI Listing
January 2004

The RuvABC resolvasome.

Eur J Biochem 2002 Nov;269(22):5492-501

Transgenomic Research Laboratory, Krebs Institute, Department of Molecular Biology and Biotechnology, University of Sheffield, UK.

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http://dx.doi.org/10.1046/j.1432-1033.2002.03250.xDOI Listing
November 2002

Use of fluorescent DNA-intercalating dyes in the analysis of DNA via ion-pair reversed-phase denaturing high-performance liquid chromatography.

Anal Biochem 2002 Oct;309(2):248-52

Department of Molecular Biology, The Transgenomic Research Laboratory, Krebs Institute, Firth Court, Western Bank, Sheffield S10 2TN, UK.

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http://dx.doi.org/10.1016/s0003-2697(02)00306-8DOI Listing
October 2002

Holliday junction binding and processing by the RuvA protein of Mycoplasma pneumoniae.

Eur J Biochem 2002 Mar;269(5):1525-33

Institute of Genetics, University of Nottingham, Queen's Medical Centre, Nottingham, UK.

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http://dx.doi.org/10.1046/j.1432-1033.2002.02805.xDOI Listing
March 2002

High-throughput analysis of nucleic acid modification reactions using ion-pair reverse-phase high-performance liquid chromatography.

Anal Biochem 2002 Feb;301(2):290-7

Transgenomic Research Laboratory, Krebs Institute, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom.

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http://dx.doi.org/10.1006/abio.2001.5482DOI Listing
February 2002

RNA footprinting analysis using ion pair reverse phase liquid chromatography.

RNA 2002 Feb;8(2):247-51

Transgenomic Research Laboratory, Krebs Institute, University of Sheffield, United Kingdom.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1370246PMC
http://dx.doi.org/10.1017/s1355838202012888DOI Listing
February 2002