Mark D Adams

Mark D Adams

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Mark D Adams

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A mutation in mouse Krüppel-like factor 15 alters the gut microbiome and response to obesogenic diet.

PLoS One 2019 25;14(9):e0222536. Epub 2019 Sep 25.

The Jackson Laboratory, Farmington, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0222536PLOS
September 2019

Identification of Potential Virulence Factors in the Model Strain A118.

Front Microbiol 2019 23;10:1599. Epub 2019 Jul 23.

Department of Biological Science, Center for Applied Biotechnology Studies, California State University, Fullerton, Fullerton, CA, United States.

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http://dx.doi.org/10.3389/fmicb.2019.01599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6663985PMC
July 2019

Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire.

MBio 2019 03 26;10(2). Epub 2019 Mar 26.

Department of Medicine, Case Western Reserve University and CWRU-Cleveland VAMC Center for Antimicrobial Resistance and Epidemiology, Cleveland, Ohio, USA.

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http://dx.doi.org/10.1128/mBio.00356-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6437055PMC
March 2019

Antibiotic collateral sensitivity is contingent on the repeatability of evolution.

Nat Commun 2019 01 18;10(1):334. Epub 2019 Jan 18.

Center for Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.

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http://www.nature.com/articles/s41467-018-08098-6
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http://dx.doi.org/10.1038/s41467-018-08098-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6338734PMC
January 2019

DNA assembly with error correction on a droplet digital microfluidics platform.

BMC Biotechnol 2018 06 1;18(1):37. Epub 2018 Jun 1.

Stanford Genome Technology Center, Stanford University, 3165 Porter Drive, Palo Alto, CA, 94304, USA.

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http://dx.doi.org/10.1186/s12896-018-0439-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984785PMC
June 2018

Genomic epidemiology of global VIM-producing Enterobacteriaceae.

J Antimicrob Chemother 2017 08;72(8):2249-2258

Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1093/jac/dkx148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5890710PMC
August 2017

Global Molecular Epidemiology of IMP-Producing Enterobacteriaceae.

Antimicrob Agents Chemother 2017 04 24;61(4). Epub 2017 Mar 24.

Departments of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada

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http://dx.doi.org/10.1128/AAC.02729-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5365671PMC
April 2017

Transcriptome Remodeling of during Infection and Treatment.

MBio 2017 03 7;8(2). Epub 2017 Mar 7.

The J. Craig Venter Institute, La Jolla, California, USA

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http://dx.doi.org/10.1128/mBio.02193-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5340874PMC
March 2017

Initial Assessment of the Molecular Epidemiology of blaNDM-1 in Colombia.

Antimicrob Agents Chemother 2016 07 20;60(7):4346-50. Epub 2016 Jun 20.

Department of Medicine, Case Western Reserve University, Cleveland, Ohio, USA Department of Pharmacology, Case Western Reserve University, Cleveland, Ohio, USA Department of Molecular Biology and Microbiology, Case Western Reserve University, Cleveland, Ohio, USA Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, Ohio, USA

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http://dx.doi.org/10.1128/AAC.03072-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914651PMC
July 2016

Quantitative assessment of insertion sequence impact on bacterial genome architecture.

Microb Genom 2016 07 18;2(7):e000062. Epub 2016 Jul 18.

J. Craig Venter Institute, 4120 Capricorn Lane, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1099/mgen.0.000062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343135PMC
July 2016

The Sequence of the Human Genome.

Clin Chem 2015 Sep 16;61(9):1207-8. Epub 2015 Jul 16.

Human Longevity Inc., La Jolla, CA.

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http://dx.doi.org/10.1373/clinchem.2014.237016DOI Listing
September 2015

SISPA-Seq for rapid whole genome surveys of bacterial isolates.

Infect Genet Evol 2015 Jun 19;32:191-8. Epub 2015 Mar 19.

J. Craig Venter Institute, La Jolla, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2015.03.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5556377PMC
June 2015

Reply to Ashktorab et al.: Mutational landscape of colon cancers in African Americans.

Proc Natl Acad Sci U S A 2015 Jun 4;112(22):E2853. Epub 2015 May 4.

Case Comprehensive Cancer Center, and Department of Medicine, Case Medical Center, Case Western Reserve University, Cleveland, OH 44106; Department of Pathology.

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http://dx.doi.org/10.1073/pnas.1505059112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460466PMC
June 2015

Host fate is rapidly determined by innate effector-microbial interactions during Acinetobacter baumannii bacteremia.

J Infect Dis 2015 Apr 5;211(8):1296-305. Epub 2014 Nov 5.

Department of Medicine, Division of Infectious Diseases, Keck School of Medicine, University of Southern California, Los Angeles.

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http://dx.doi.org/10.1093/infdis/jiu593DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4447835PMC
April 2015

Novel recurrently mutated genes in African American colon cancers.

Proc Natl Acad Sci U S A 2015 Jan 12;112(4):1149-54. Epub 2015 Jan 12.

Case Comprehensive Cancer Center, and Department of Medicine, Case Medical Center, Case Western Reserve University, Cleveland, OH 44106; Department of Pathology.

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http://dx.doi.org/10.1073/pnas.1417064112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4313860PMC
January 2015

Epithelial innate immune response to Acinetobacter baumannii challenge.

Infect Immun 2014 Nov 11;82(11):4458-65. Epub 2014 Aug 11.

Department of Biological Sciences, School of Dental Medicine, Case Western Reserve University, Cleveland, Ohio, USA

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http://dx.doi.org/10.1128/IAI.01897-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249312PMC
November 2014

Unique structural modifications are present in the lipopolysaccharide from colistin-resistant strains of Acinetobacter baumannii.

Antimicrob Agents Chemother 2013 Oct 22;57(10):4831-40. Epub 2013 Jul 22.

Department of Microbial Pathogenesis, University of Maryland School of Dentistry, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/AAC.00865-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811424PMC
October 2013

Identification of novel mouse genes conferring posthypoxic pauses.

J Appl Physiol (1985) 2012 Jul 26;113(1):167-74. Epub 2012 Apr 26.

Division of Pulmonary, Critical Care, and Sleep Medicine, University Hospital Case Medical Center and the Louis Stokes Cleveland DVA Medical Center, Case Western Reserve University, Cleveland, Ohio, USA.

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http://jap.physiology.org/content/jap/113/1/167.full.pdf
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http://jap.physiology.org/content/jap/early/2012/04/24/jappl
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http://jap.physiology.org/cgi/doi/10.1152/japplphysiol.01394
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http://dx.doi.org/10.1152/japplphysiol.01394.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3404832PMC
July 2012

How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?

BioData Min 2012 Jun 18;5(1). Epub 2012 Jun 18.

Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, 44106, USA.

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http://dx.doi.org/10.1186/1756-0381-5-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3414812PMC
June 2012

Active and passive immunization protects against lethal, extreme drug resistant-Acinetobacter baumannii infection.

PLoS One 2012 10;7(1):e29446. Epub 2012 Jan 10.

Division of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-University of California Los Angeles (UCLA) Medical Center, Torrance, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029446PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3254619PMC
May 2012

Integrative genomic analysis of human ribosomal DNA.

Nucleic Acids Res 2011 Jul 25;39(12):4949-60. Epub 2011 Feb 25.

Department of Genetics, Case Western Reserve University, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.1093/nar/gkq1326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130253PMC
July 2011

Genomic analysis of Acinetobacter baumannii A118 by comparison of optical maps: identification of structures related to its susceptibility phenotype.

Antimicrob Agents Chemother 2011 Apr 31;55(4):1520-6. Epub 2011 Jan 31.

Center for Applied Biotechnology Studies, Department of Biological Science, California State University Fullerton, Fullerton, CA 92831-3599, USA.

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http://dx.doi.org/10.1128/AAC.01595-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067174PMC
April 2011

A candidate gene study of obstructive sleep apnea in European Americans and African Americans.

Am J Respir Crit Care Med 2010 Oct 10;182(7):947-53. Epub 2010 Jun 10.

Division of Allergy, Pulmonary and Critical Care, Vanderbilt University Medical Center, Nashville, Tennessee, USA.

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http://dx.doi.org/10.1164/rccm.201002-0192OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2970865PMC
October 2010

Genomewide analysis of divergence of antibiotic resistance determinants in closely related isolates of Acinetobacter baumannii.

Antimicrob Agents Chemother 2010 Sep 7;54(9):3569-77. Epub 2010 Jun 7.

Department of Genetics, Case Western Reserve University, Cleveland, Ohio 44106, USA.

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http://aac.asm.org/cgi/doi/10.1128/AAC.00057-10
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http://dx.doi.org/10.1128/AAC.00057-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2934971PMC
September 2010

Acinetobacter baumannii-associated skin and soft tissue infections: recognizing a broadening spectrum of disease.

Surg Infect (Larchmt) 2010 Feb;11(1):49-57

Division of Infectious Diseases and HIV Medicine, University Hospitals Case Medical Center, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.1089/sur.2009.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956563PMC
February 2010

Resistance to colistin in Acinetobacter baumannii associated with mutations in the PmrAB two-component system.

Antimicrob Agents Chemother 2009 Sep 15;53(9):3628-34. Epub 2009 Jun 15.

Department of Genetics, Case Western Reserve University, Cleveland, OH 44106-4955, USA.

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http://aac.asm.org/cgi/doi/10.1128/AAC.00284-09
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http://dx.doi.org/10.1128/AAC.00284-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2737849PMC
September 2009

An ENU-induced recessive mutation in Mpl leads to thrombocytopenia with overdominance.

Exp Hematol 2009 Feb 6;37(2):276-84. Epub 2008 Dec 6.

Department of Genetics, Case Western Reserve University, Cleveland, Ohio 44106-4955, USA.

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http://dx.doi.org/10.1016/j.exphem.2008.10.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656350PMC
February 2009

An empirical test for branch-specific positive selection.

Genetics 2008 Aug 9;179(4):2183-93. Epub 2008 Aug 9.

Department of Genetics, Case Western Reserve University, Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1534/genetics.108.090548DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516090PMC
August 2008

Human PAML browser: a database of positive selection on human genes using phylogenetic methods.

Nucleic Acids Res 2008 Jan 25;36(Database issue):D800-8. Epub 2007 Oct 25.

Department of Genetics, Case Western Reserve University, Cleveland, OH, USA.

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http://dx.doi.org/10.1093/nar/gkm764DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238824PMC
January 2008

Genome resources and comparative analysis tools for cardiovascular research.

Methods Mol Med 2006 ;128:101-23

Bovine Functional Genomics Laboratory, Animal and Natural Resources Institute, US Department of Agriculture-Agriculture Research Service, Beltsville, MD, USA.

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http://dx.doi.org/10.1385/1-59745-159-2:101DOI Listing
December 2006

Conserved sequences and the evolution of gene regulatory signals.

Authors:
Mark D Adams

Curr Opin Genet Dev 2005 Dec 26;15(6):628-33. Epub 2005 Sep 26.

Department of Genetics, Center for Human Genetics, Center for Computational Genomics and Systems Biology, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0959437X0500173
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http://dx.doi.org/10.1016/j.gde.2005.09.004DOI Listing
December 2005

A catalog of nonsynonymous polymorphism on mouse chromosome 16.

Mamm Genome 2005 Dec 8;16(12):925-33. Epub 2005 Dec 8.

Department of Genetics, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1007/s00335-005-0085-0DOI Listing
December 2005

Natural selection on protein-coding genes in the human genome.

Nature 2005 Oct;437(7062):1153-7

Department of Biological Statistics and Computational Biology, 101 Biotechnology Building, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/nature04240DOI Listing
October 2005

The genome of the African trypanosome Trypanosoma brucei.

Authors:
Matthew Berriman Elodie Ghedin Christiane Hertz-Fowler Gaëlle Blandin Hubert Renauld Daniella C Bartholomeu Nicola J Lennard Elisabet Caler Nancy E Hamlin Brian Haas Ulrike Böhme Linda Hannick Martin A Aslett Joshua Shallom Lucio Marcello Lihua Hou Bill Wickstead U Cecilia M Alsmark Claire Arrowsmith Rebecca J Atkin Andrew J Barron Frederic Bringaud Karen Brooks Mark Carrington Inna Cherevach Tracey-Jane Chillingworth Carol Churcher Louise N Clark Craig H Corton Ann Cronin Rob M Davies Jonathon Doggett Appolinaire Djikeng Tamara Feldblyum Mark C Field Audrey Fraser Ian Goodhead Zahra Hance David Harper Barbara R Harris Heidi Hauser Jessica Hostetler Al Ivens Kay Jagels David Johnson Justin Johnson Kristine Jones Arnaud X Kerhornou Hean Koo Natasha Larke Scott Landfear Christopher Larkin Vanessa Leech Alexandra Line Angela Lord Annette Macleod Paul J Mooney Sharon Moule David M A Martin Gareth W Morgan Karen Mungall Halina Norbertczak Doug Ormond Grace Pai Chris S Peacock Jeremy Peterson Michael A Quail Ester Rabbinowitsch Marie-Adele Rajandream Chris Reitter Steven L Salzberg Mandy Sanders Seth Schobel Sarah Sharp Mark Simmonds Anjana J Simpson Luke Tallon C Michael R Turner Andrew Tait Adrian R Tivey Susan Van Aken Danielle Walker David Wanless Shiliang Wang Brian White Owen White Sally Whitehead John Woodward Jennifer Wortman Mark D Adams T Martin Embley Keith Gull Elisabetta Ullu J David Barry Alan H Fairlamb Fred Opperdoes Barclay G Barrell John E Donelson Neil Hall Claire M Fraser Sara E Melville Najib M El-Sayed

Science 2005 Jul;309(5733):416-22

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.

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http://dx.doi.org/10.1126/science.1112642DOI Listing
July 2005

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Human chromosome 7: DNA sequence and biology.

Science 2003 May 10;300(5620):767-72. Epub 2003 Apr 10.

Department of Genetics and Genomic Biology, The Hospital for Sick Children, Toronto, Ontario, Canada, M5G 1X8.

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http://dx.doi.org/10.1126/science.1083423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882961PMC
May 2003

ENU mutagenesis for pharma.

Authors:
Mark D Adams

Drug Discov Today 2003 Mar;8(5):199-200

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http://dx.doi.org/10.1016/s1359-6446(03)02621-7DOI Listing
March 2003

Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?

Genetica 2003 Mar;117(2-3):227-37

Departamento de Genética, Universidade Federal do Rio de Janeiro, Caixa Postal 68011 CEP 21944-970, Rio de Janeiro, Brazil.

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http://dx.doi.org/10.1023/a:1022900313650DOI Listing
March 2003

The independence of our genome assemblies.

Proc Natl Acad Sci U S A 2003 Mar;100(6):3025-6

Celera Genomics, 45 West Gude Drive, Rockville, MD 20850; Institute for Biological Energy Alternatives, 1901 Research Boulevard, Suite 600, Rockville, MD 20850; Department of Electrical Engineering and Computer Sciences, 231 Cory Hall, University of California, Berkeley, CA 94720; and Center for the Advancement of Genomics, 1901 Research Boulevard, Suite 600, Rockville, MD 20850.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC152237PMC
http://dx.doi.org/10.1073/pnas.0637478100DOI Listing
March 2003

The genome sequence of the malaria mosquito Anopheles gambiae.

Authors:
Robert A Holt G Mani Subramanian Aaron Halpern Granger G Sutton Rosane Charlab Deborah R Nusskern Patrick Wincker Andrew G Clark José M C Ribeiro Ron Wides Steven L Salzberg Brendan Loftus Mark Yandell William H Majoros Douglas B Rusch Zhongwu Lai Cheryl L Kraft Josep F Abril Veronique Anthouard Peter Arensburger Peter W Atkinson Holly Baden Veronique de Berardinis Danita Baldwin Vladimir Benes Jim Biedler Claudia Blass Randall Bolanos Didier Boscus Mary Barnstead Shuang Cai Angela Center Kabir Chaturverdi George K Christophides Mathew A Chrystal Michele Clamp Anibal Cravchik Val Curwen Ali Dana Art Delcher Ian Dew Cheryl A Evans Michael Flanigan Anne Grundschober-Freimoser Lisa Friedli Zhiping Gu Ping Guan Roderic Guigo Maureen E Hillenmeyer Susanne L Hladun James R Hogan Young S Hong Jeffrey Hoover Olivier Jaillon Zhaoxi Ke Chinnappa Kodira Elena Kokoza Anastasios Koutsos Ivica Letunic Alex Levitsky Yong Liang Jhy-Jhu Lin Neil F Lobo John R Lopez Joel A Malek Tina C McIntosh Stephan Meister Jason Miller Clark Mobarry Emmanuel Mongin Sean D Murphy David A O'Brochta Cynthia Pfannkoch Rong Qi Megan A Regier Karin Remington Hongguang Shao Maria V Sharakhova Cynthia D Sitter Jyoti Shetty Thomas J Smith Renee Strong Jingtao Sun Dana Thomasova Lucas Q Ton Pantelis Topalis Zhijian Tu Maria F Unger Brian Walenz Aihui Wang Jian Wang Mei Wang Xuelan Wang Kerry J Woodford Jennifer R Wortman Martin Wu Alison Yao Evgeny M Zdobnov Hongyu Zhang Qi Zhao Shaying Zhao Shiaoping C Zhu Igor Zhimulev Mario Coluzzi Alessandra della Torre Charles W Roth Christos Louis Francis Kalush Richard J Mural Eugene W Myers Mark D Adams Hamilton O Smith Samuel Broder Malcolm J Gardner Claire M Fraser Ewan Birney Peer Bork Paul T Brey J Craig Venter Jean Weissenbach Fotis C Kafatos Frank H Collins Stephen L Hoffman

Science 2002 Oct;298(5591):129-49

Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA.

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http://ccb.jhu.edu/people/salzberg/docs/Anopheles-gambiae-re
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http://www.sciencemag.org/cgi/doi/10.1126/science.1076181
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http://dx.doi.org/10.1126/science.1076181DOI Listing
October 2002

Recent segmental duplications in the human genome.

Science 2002 Aug;297(5583):1003-7

Department of Genetics, Center for Computational Genomics, and Center for Human Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, OH 44106, USA.

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http://dx.doi.org/10.1126/science.1072047DOI Listing
August 2002

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.

Authors:
Richard J Mural Mark D Adams Eugene W Myers Hamilton O Smith George L Gabor Miklos Ron Wides Aaron Halpern Peter W Li Granger G Sutton Joe Nadeau Steven L Salzberg Robert A Holt Chinnappa D Kodira Fu Lu Lin Chen Zuoming Deng Carlos C Evangelista Weiniu Gan Thomas J Heiman Jiayin Li Zhenya Li Gennady V Merkulov Natalia V Milshina Ashwinikumar K Naik Rong Qi Bixiong Chris Shue Aihui Wang Jian Wang Xin Wang Xianghe Yan Jane Ye Shibu Yooseph Qi Zhao Liansheng Zheng Shiaoping C Zhu Kendra Biddick Randall Bolanos Arthur L Delcher Ian M Dew Daniel Fasulo Michael J Flanigan Daniel H Huson Saul A Kravitz Jason R Miller Clark M Mobarry Knut Reinert Karin A Remington Qing Zhang Xiangqun H Zheng Deborah R Nusskern Zhongwu Lai Yiding Lei Wenyan Zhong Alison Yao Ping Guan Rui-Ru Ji Zhiping Gu Zhen-Yuan Wang Fei Zhong Chunlin Xiao Chia-Chien Chiang Mark Yandell Jennifer R Wortman Peter G Amanatides Suzanne L Hladun Eric C Pratts Jeffery E Johnson Kristina L Dodson Kerry J Woodford Cheryl A Evans Barry Gropman Douglas B Rusch Eli Venter Mei Wang Thomas J Smith Jarrett T Houck Donald E Tompkins Charles Haynes Debbie Jacob Soo H Chin David R Allen Carl E Dahlke Robert Sanders Kelvin Li Xiangjun Liu Alexander A Levitsky William H Majoros Quan Chen Ashley C Xia John R Lopez Michael T Donnelly Matthew H Newman Anna Glodek Cheryl L Kraft Marc Nodell Feroze Ali Hui-Jin An Danita Baldwin-Pitts Karen Y Beeson Shuang Cai Mark Carnes Amy Carver Parris M Caulk Angela Center Yen-Hui Chen Ming-Lai Cheng My D Coyne Michelle Crowder Steven Danaher Lionel B Davenport Raymond Desilets Susanne M Dietz Lisa Doup Patrick Dullaghan Steven Ferriera Carl R Fosler Harold C Gire Andres Gluecksmann Jeannine D Gocayne Jonathan Gray Brit Hart Jason Haynes Jeffery Hoover Tim Howland Chinyere Ibegwam Mena Jalali David Johns Leslie Kline Daniel S Ma Steven MacCawley Anand Magoon Felecia Mann David May Tina C McIntosh Somil Mehta Linda Moy Mee C Moy Brian J Murphy Sean D Murphy Keith A Nelson Zubeda Nuri Kimberly A Parker Alexandre C Prudhomme Vinita N Puri Hina Qureshi John C Raley Matthew S Reardon Megan A Regier Yu-Hui C Rogers Deanna L Romblad Jakob Schutz John L Scott Richard Scott Cynthia D Sitter Michella Smallwood Arlan C Sprague Erin Stewart Renee V Strong Ellen Suh Karena Sylvester Reginald Thomas Ni Ni Tint Christopher Tsonis Gary Wang George Wang Monica S Williams Sherita M Williams Sandra M Windsor Keriellen Wolfe Mitchell M Wu Jayshree Zaveri Kabir Chaturvedi Andrei E Gabrielian Zhaoxi Ke Jingtao Sun Gangadharan Subramanian J Craig Venter Cynthia M Pfannkoch Mary Barnstead Lisa D Stephenson

Science 2002 May;296(5573):1661-71

Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1126/science.1069193DOI Listing
May 2002

On the sequencing and assembly of the human genome.

Proc Natl Acad Sci U S A 2002 Apr 19;99(7):4145-6. Epub 2002 Mar 19.

Celera Genomics, 45 W. Gude Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1073/pnas.092136699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC123615PMC
April 2002