Mark Blaxter

Mark Blaxter

UNVERIFIED PROFILE

Are you Mark Blaxter?   Register this Author

Register author
Mark Blaxter

Mark Blaxter

Publications by authors named "Mark Blaxter"

Are you Mark Blaxter?   Register this Author

100Publications

1780Reads

9Profile Views

The Genome of Caenorhabditis bovis.

Curr Biol 2020 Mar 27;30(6):1023-1031.e4. Epub 2020 Feb 27.

Institute of Evolutionary Biology, Ashworth Laboratories, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2020.01.074DOI Listing
March 2020

BlobToolKit - Interactive Quality Assessment of Genome Assemblies.

G3 (Bethesda) 2020 Feb 18. Epub 2020 Feb 18.

University of Edinburgh; Wellcome Trust Sanger Institute.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/g3.119.400908DOI Listing
February 2020

Formin, an opinion.

Development 2020 Jan 9;147(1). Epub 2020 Jan 9.

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.187427DOI Listing
January 2020

Genome sequence of the root-knot nematode .

J Nematol 2020 ;52:1-5

Agricultural Institute of Slovenia, Plant Protection Department, Ljubljana, Slovenia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.21307/jofnem-2020-025DOI Listing
January 2020

Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp.

PLoS Genet 2019 11 4;15(11):e1008398. Epub 2019 Nov 4.

Institute of Evolutionary Biology, University of Edinburgh, King's Buildings, Edinburgh, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1008398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6855507PMC
November 2019

Comparative genomics of 10 new species.

Evol Lett 2019 Apr 2;3(2):217-236. Epub 2019 Apr 2.

Institute of Evolutionary Biology, Ashworth Laboratories, School of Biological Sciences University of Edinburgh Edinburgh EH9 3JT United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/evl3.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6457397PMC
April 2019

Genome-wide methylation is modified by caloric restriction in Daphnia magna.

BMC Genomics 2019 Mar 8;20(1):197. Epub 2019 Mar 8.

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-019-5578-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408862PMC
March 2019

Males as somatic investment in a parthenogenetic nematode.

Science 2019 03;363(6432):1210-1213

Laboratoire de Biologie et Modélisation de la Cellule, Université de Lyon, ENS, UCBL, CNRS, INSERM, UMR 5239, U 1210, F-69364 Lyon, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.aau0099DOI Listing
March 2019

Dissection of Ramularia Leaf Spot Disease by Integrated Analysis of Barley and Ramularia collo-cygni Transcriptome Responses.

Mol Plant Microbe Interact 2019 Feb 14;32(2):176-193. Epub 2018 Dec 14.

4 Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds vej 10, Aarhus, Denmark; and.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1094/MPMI-05-18-0113-RDOI Listing
February 2019

High genetic diversity in the Dirofilaria repens species complex revealed by mitochondrial genomes of feline microfilaria samples from Narathiwat, Thailand.

Transbound Emerg Dis 2019 Jan 19;66(1):389-399. Epub 2018 Oct 19.

Institute for Parasitology and Tropical Veterinary Medicine, Freie Universität Berlin, Berlin, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tbed.13033DOI Listing
January 2019

Characterisation of the British honey bee metagenome.

Nat Commun 2018 11 26;9(1):4995. Epub 2018 Nov 26.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG, Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-018-07426-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255801PMC
November 2018

Improving the annotation of the Heterorhabditis bacteriophora genome.

Gigascience 2018 04;7(4)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gigascience/giy034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5906903PMC
April 2018

Daphnia magna microRNAs respond to nutritional stress and ageing but are not transgenerational.

Mol Ecol 2018 03 7;27(6):1402-1412. Epub 2018 Mar 7.

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/mec.14525DOI Listing
March 2018

Sex- and Gamete-Specific Patterns of X Chromosome Segregation in a Trioecious Nematode.

Curr Biol 2018 01 21;28(1):93-99.e3. Epub 2017 Dec 21.

School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2017.11.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772170PMC
January 2018

Genome comparisons indicate recent transfer of Ri-like between sister species and .

Ecol Evol 2017 11 8;7(22):9391-9404. Epub 2017 Oct 8.

Department of Evolution and Ecology University of California Davis CA USA.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/ece3.3449
Publisher Site
http://dx.doi.org/10.1002/ece3.3449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5696437PMC
November 2017

KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences.

G3 (Bethesda) 2017 10 5;7(10):3349-3357. Epub 2017 Oct 5.

Institute of Evolutionary Biology, University of Edinburgh, EH9 3JT, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/g3.117.300233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633385PMC
October 2017

Toward Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode To Identify Mutations Affecting Vulva Development.

Genetics 2017 08 19;206(4):1747-1761. Epub 2017 Jun 19.

École Normale Supérieure, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, Institut de Biologie de l'École Normale Supérieure, Paris Sciences et Lettres Research University, 75005, France

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/genetics.117.203521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5560785PMC
August 2017

Annotated mitochondrial genome with Nanopore R9 signal for .

F1000Res 2017 19;6:56. Epub 2017 Jan 19.

Malaghan Institute of Medical Research, Wellington, New Zealand.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.12688/f1000research.10545.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399971PMC
January 2017

GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.

Database (Oxford) 2017 01;2017

Institute of Evolutionary Biology, The University of Edinburgh, Ashworth Laboratories, Charlotte Auerbach Road, Edinburgh, EH9 3FL, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bax039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467552PMC
January 2017

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements.

Genome Biol Evol 2016 10 5;8(9):2964-2978. Epub 2016 Oct 5.

Evolutionary Biology Group, School of Environmental Sciences, University of Hull, England, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evw208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635653PMC
October 2016

Imagining Sisyphus happy: DNA barcoding and the unnamed majority.

Authors:
Mark Blaxter

Philos Trans R Soc Lond B Biol Sci 2016 09;371(1702)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rstb.2015.0329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971181PMC
September 2016

Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): Inference from transcriptome-wide coalescence analyses.

Evolution 2016 08 8;70(8):1803-18. Epub 2016 Jul 8.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Charlotte Auerbach Road, Edinburgh, EH9 3FL, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/evo.12978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5129456PMC
August 2016

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data.

Gigascience 2015 4;4:60. Epub 2015 Dec 4.

Edinburgh Genomics, School of Biological Sciences, The King's Buildings, The University of Edinburgh, EH9 3FL Edinburgh, UK ; The Roslin Institute, University of Edinburgh, Easter Bush, EH25 9RG Midlothian, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13742-015-0101-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670535PMC
July 2016

A molecular palaeobiological exploration of arthropod terrestrialization.

Philos Trans R Soc Lond B Biol Sci 2016 07;371(1699)

School of Earth Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol BS8 1TQ, UK School of Biological Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol BS8 1TQ, UK

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rstb.2015.0133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920334PMC
July 2016

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

RNA 2016 06 28;22(6):839-51. Epub 2016 Mar 28.

Division of Computational Biology, College of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom Division of Gene Regulation and Expression, College of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom Division of Biological Chemistry and Drug Discovery, College of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1261/rna.053959.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878611PMC
June 2016

Characterization of the mantle transcriptome in bivalves: Pecten maximus, Mytilus edulis and Crassostrea gigas.

Mar Genomics 2016 Jun 7;27:9-15. Epub 2016 May 7.

British Antarctic Survey, Natural Environment Research Council, High Cross, Magingley Road, CB3 0ET Cambridge, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.margen.2016.04.003DOI Listing
June 2016

Reminder to deposit DNA sequences.

Science 2016 May 11;352(6287):780. Epub 2016 May 11.

Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA. Beijing Institute of Genomics, Beijing, 100101, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.aaf7672DOI Listing
May 2016

Formin Is Associated with Left-Right Asymmetry in the Pond Snail and the Frog.

Curr Biol 2016 Mar 25;26(5):654-60. Epub 2016 Feb 25.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UK; Edinburgh Genomics, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2015.12.071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791482PMC
March 2016

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Bioinformatics 2015 Nov 23;31(22):3625-30. Epub 2015 Jul 23.

Division of Computational Biology and Centre for Gene Regulation and Expression, College of Life Sciences, University of Dundee, Dow Street Dundee, DD1 5EH, UK, Biological Chemistry and Drug Discovery, College of Life Sciences, University of Dundee, Dow Street Dundee, DD1 5EH, UK.

View Article

Download full-text PDF

Source
http://bioinformatics.oxfordjournals.org/content/early/2015/
Web Search
http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btv425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4754627PMC
November 2015

A conserved set of maternal genes? Insights from a molluscan transcriptome.

Int J Dev Biol 2014 ;58(6-8):501-11

School of Life Sciences, University of Nottingham, University Park, Nottingham, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1387/ijdb.140121adDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4594767PMC
October 2015

ReproPhylo: An Environment for Reproducible Phylogenomics.

PLoS Comput Biol 2015 Sep 3;11(9):e1004447. Epub 2015 Sep 3.

Evolutionary Biology Group, School of Biological, Biomedical & Environmental Sciences, The University of Hull, Hull, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1004447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559436PMC
September 2015

The evolution of tyrosine-recombinase elements in Nematoda.

PLoS One 2014 8;9(9):e106630. Epub 2014 Sep 8.

Evolutionary Biology Group, School of Biological, Biomedical and Environmental Sciences, University of Hull, Hull, United Kingdom.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0106630PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157794PMC
May 2015

The genomes of two key bumblebee species with primitive eusocial organization.

Authors:
Ben M Sadd Seth M Barribeau Guy Bloch Dirk C de Graaf Peter Dearden Christine G Elsik Jürgen Gadau Cornelis J P Grimmelikhuijzen Martin Hasselmann Jeffrey D Lozier Hugh M Robertson Guy Smagghe Eckart Stolle Matthias Van Vaerenbergh Robert M Waterhouse Erich Bornberg-Bauer Steffen Klasberg Anna K Bennett Francisco Câmara Roderic Guigó Katharina Hoff Marco Mariotti Monica Munoz-Torres Terence Murphy Didac Santesmasses Gro V Amdam Matthew Beckers Martin Beye Matthias Biewer Márcia M G Bitondi Mark L Blaxter Andrew F G Bourke Mark J F Brown Severine D Buechel Rossanah Cameron Kaat Cappelle James C Carolan Olivier Christiaens Kate L Ciborowski David F Clarke Thomas J Colgan David H Collins Andrew G Cridge Tamas Dalmay Stephanie Dreier Louis du Plessis Elizabeth Duncan Silvio Erler Jay Evans Tiago Falcon Kevin Flores Flávia C P Freitas Taro Fuchikawa Tanja Gempe Klaus Hartfelder Frank Hauser Sophie Helbing Fernanda C Humann Frano Irvine Lars S Jermiin Claire E Johnson Reed M Johnson Andrew K Jones Tatsuhiko Kadowaki Jonathan H Kidner Vasco Koch Arian Köhler F Bernhard Kraus H Michael G Lattorff Megan Leask Gabrielle A Lockett Eamonn B Mallon David S Marco Antonio Monika Marxer Ivan Meeus Robin F A Moritz Ajay Nair Kathrin Näpflin Inga Nissen Jinzhi Niu Francis M F Nunes John G Oakeshott Amy Osborne Marianne Otte Daniel G Pinheiro Nina Rossié Olav Rueppell Carolina G Santos Regula Schmid-Hempel Björn D Schmitt Christina Schulte Zilá L P Simões Michelle P M Soares Luc Swevers Eva C Winnebeck Florian Wolschin Na Yu Evgeny M Zdobnov Peshtewani K Aqrawi Kerstin P Blankenburg Marcus Coyle Liezl Francisco Alvaro G Hernandez Michael Holder Matthew E Hudson LaRonda Jackson Joy Jayaseelan Vandita Joshi Christie Kovar Sandra L Lee Robert Mata Tittu Mathew Irene F Newsham Robin Ngo Geoffrey Okwuonu Christopher Pham Ling-Ling Pu Nehad Saada Jireh Santibanez DeNard Simmons Rebecca Thornton Aarti Venkat Kimberly K O Walden Yuan-Qing Wu Griet Debyser Bart Devreese Claire Asher Julie Blommaert Ariel D Chipman Lars Chittka Bertrand Fouks Jisheng Liu Meaghan P O'Neill Seirian Sumner Daniela Puiu Jiaxin Qu Steven L Salzberg Steven E Scherer Donna M Muzny Stephen Richards Gene E Robinson Richard A Gibbs Paul Schmid-Hempel Kim C Worley

Genome Biol 2015 Apr 24;16:76. Epub 2015 Apr 24.

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, TX, 77030, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-015-0623-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4414376PMC
April 2015

The evolution of parasitism in Nematoda.

Parasitology 2015 Feb 25;142 Suppl 1:S26-39. Epub 2014 Jun 25.

Institute of Evolutionary Biology,The University of Edinburgh,Edinburgh EH9 3JT,UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1017/S0031182014000791DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4413787PMC
February 2015

poRe: an R package for the visualization and analysis of nanopore sequencing data.

Bioinformatics 2015 Jan 29;31(1):114-5. Epub 2014 Aug 29.

Edinburgh Genomics, The Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, Edinburgh EH25 9RG and Edinburgh Genomics, Institute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://biorxiv.org/content/biorxiv/early/2014/07/29/007567.f
Web Search
http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btu590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271141PMC
January 2015

Extracellular Onchocerca-derived small RNAs in host nodules and blood.

Parasit Vectors 2015 Jan 27;8:58. Epub 2015 Jan 27.

Centre for Immunity, Infection and Evolution, Ashworth Laboratories, University of Edinburgh, West Mains Road, Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13071-015-0656-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4316651PMC
January 2015

Transcriptome analyses of Anguillicola crassus from native and novel hosts.

PeerJ 2014 27;2:e684. Epub 2014 Nov 27.

Edinburgh Genomics, The Ashworth Laboratories, The University of Edinburgh , Edinburgh , UK ; Institute of Evolutionary Biology, The Ashworth Laboratories, The University of Edinburgh , Edinburgh , UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.684DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4250067PMC
December 2014

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Nat Commun 2014 Nov 25;5:5488. Epub 2014 Nov 25.

1] Institute of Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, UK [2] Centre for Immunity, Infection and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ncomms6488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263141PMC
November 2014

Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.

PLoS Genet 2014 Jun 5;10(6):e1004397. Epub 2014 Jun 5.

Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1004397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046930PMC
June 2014

Quality control of next-generation sequencing data without a reference.

Front Genet 2014 6;5:111. Epub 2014 May 6.

Edinburgh Genomics, Ashworth Laboratories, University of Edinburgh Edinburgh, UK ; Institute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2014.00111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4018527PMC
May 2014

The complex hybrid origins of the root knot nematodes revealed through comparative genomics.

PeerJ 2014 6;2:e356. Epub 2014 May 6.

Institute of Evolutionary Biology, University of Edinburgh , Edinburgh , UK ; The GenePool Genomics Facility, School of Biological Sciences, University of Edinburgh , Edinburgh , UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4017819PMC
May 2014

Development: the maternal-zygotic transition revisited.

Authors:
Mark Blaxter

Curr Biol 2014 Jan;24(2):R72-5

Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh EH9 3JT, UK. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2013.11.051DOI Listing
January 2014

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots.

Front Genet 2013 29;4:237. Epub 2013 Nov 29.

Institute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh Edinburgh, UK ; Edinburgh Genomics, University of Edinburgh Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2013.00237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843372PMC
December 2013

Badger--an accessible genome exploration environment.

Bioinformatics 2013 Nov 11;29(21):2788-9. Epub 2013 Aug 11.

Institute of Evolutionary Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btt466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3799468PMC
November 2013

Genome-wide evidence for speciation with gene flow in Heliconius butterflies.

Genome Res 2013 Nov 17;23(11):1817-28. Epub 2013 Sep 17.

Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.159426.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814882PMC
November 2013

afterParty: turning raw transcriptomes into permanent resources.

BMC Bioinformatics 2013 Oct 7;14:301. Epub 2013 Oct 7.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-14-301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3856601PMC
October 2013

Functional diversification of Argonautes in nematodes: an expanding universe.

Biochem Soc Trans 2013 Aug;41(4):881-6

Centre for Immunity, Infection and Evolution, Ashworth Laboratories, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1042/BST20130086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3782831PMC
August 2013

Special features of RAD Sequencing data: implications for genotyping.

Mol Ecol 2013 Jun 30;22(11):3151-64. Epub 2012 Oct 30.

Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, West Mains Road, Edinburgh, EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/mec.12084
Publisher Site
http://dx.doi.org/10.1111/mec.12084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712469PMC
June 2013

RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene.

Mol Ecol 2013 Jun 15;22(11):3077-89. Epub 2013 Mar 15.

Centre for Genetics and Genomics, School of Biology, University of Nottingham, Nottingham, NG7 2RD, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/mec.12262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712483PMC
June 2013

The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus.

BMC Genomics 2013 Feb 8;14:87. Epub 2013 Feb 8.

Department of Ecology and Parasitology, Zoological Institute, Karlsruhe Institute of Technology, Kornblumenstrasse 13, Karlsruhe, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-14-87DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630068PMC
February 2013

Drosophila suzukii.

Curr Biol 2013 Jan;23(1):R8-9

Sustainable Agro-ecosystems and Bioresources Department, IASMA Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, TN, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cub.2012.11.021DOI Listing
January 2013

The biology of nematode- and IL4Rα-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics.

Blood 2012 Dec 16;120(25):e93-e104. Epub 2012 Oct 16.

Institute of Immunology and Infection Research and Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1182/blood-2012-07-442640DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314526PMC
December 2012

Silencing of germline-expressed genes by DNA elimination in somatic cells.

Dev Cell 2012 Nov 1;23(5):1072-80. Epub 2012 Nov 1.

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.devcel.2012.09.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3620533PMC
November 2012

The worm in the world and the world in the worm.

BMC Biol 2012 Jun 25;10:57. Epub 2012 Jun 25.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1741-7007-10-57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3382423PMC
June 2012

The phylogenetics of Anguillicolidae (Nematoda: Anguillicoloidea), swimbladder parasites of eels.

BMC Evol Biol 2012 May 4;12:60. Epub 2012 May 4.

Department of Ecology and Parasitology, Zoological Institute 1, University of Karlsruhe, 76131, Karlsruhe, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2148-12-60DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3503875PMC
May 2012

959 Nematode Genomes: a semantic wiki for coordinating sequencing projects.

Nucleic Acids Res 2012 Jan 3;40(Database issue):D1295-300. Epub 2011 Nov 3.

Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkr826DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245058PMC
January 2012

Toward 959 nematode genomes.

Worm 2012 Jan;1(1):42-50

Institute of Evolutionary Biology; University of Edinburgh; Edinburgh, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4161/worm.19046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3670170PMC
January 2012

Simultaneous genome sequencing of symbionts and their hosts.

Symbiosis 2011 Nov 15;55(3):119-126. Epub 2012 Feb 15.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Edinburgh, EH9 3JT UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s13199-012-0154-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294205PMC
November 2011

NEMBASE4: the nematode transcriptome resource.

Int J Parasitol 2011 Jul 21;41(8):881-94. Epub 2011 Apr 21.

Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh EH9 3JT, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijpara.2011.03.009DOI Listing
July 2011

Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Nat Rev Genet 2011 Jun 17;12(7):499-510. Epub 2011 Jun 17.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, King's Buildings, West Mains Road, Edinburgh, EH9 3JT, UK.

View Article

Download full-text PDF

Source
https://web.natur.cuni.cz/~muncling/NGS2.pdf
Web Search
http://www.nature.com/doifinder/10.1038/nrg3012
Publisher Site
http://dx.doi.org/10.1038/nrg3012DOI Listing
June 2011

jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units.

PLoS One 2011 Apr 25;6(4):e19259. Epub 2011 Apr 25.

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019259PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081837PMC
April 2011