Marina Bibikova

Marina Bibikova

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Marina Bibikova

Marina Bibikova

Publications by authors named "Marina Bibikova"

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DNA methylation profiles in African American prostate cancer patients in relation to disease progression.

Genomics 2019 01 21;111(1):10-16. Epub 2016 Feb 21.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, United States; Department of Epidemiology, School of Public Health, University of Washington, Seattle, WA, United States.

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http://dx.doi.org/10.1016/j.ygeno.2016.02.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4992660PMC
January 2019

loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles.

Oncotarget 2017 Oct 15;8(48):84338-84348. Epub 2017 Sep 15.

Division of Public Health Sciences, Fred Hutchison Cancer Research Center, Seattle, Washington, USA.

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http://dx.doi.org/10.18632/oncotarget.20940DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663600PMC
October 2017

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy.

Clin Epigenetics 2016;8:97. Epub 2016 Sep 15.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109-1024 USA ; Department of Epidemiology, University of Washington School of Public Health, Seattle, WA USA.

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http://dx.doi.org/10.1186/s13148-016-0260-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024414PMC
April 2017

Substantial DNA methylation differences between two major neuronal subtypes in human brain.

Nucleic Acids Res 2016 Apr 26;44(6):2593-612. Epub 2015 Nov 26.

James J. Peters VA Medical Center, Bronx, NY 10468, USA The Friedman Brain Institute and Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA

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http://dx.doi.org/10.1093/nar/gkv1304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824074PMC
April 2016

Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue.

Prostate 2015 Dec 18;75(16):1941-50. Epub 2015 Sep 18.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.

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http://dx.doi.org/10.1002/pros.23093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4928710PMC
December 2015

Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors.

Clin Epigenetics 2015 12;7:128. Epub 2015 Dec 12.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA USA ; Department of Epidemiology, School of Public Health, University of Washington, Seattle, WA USA.

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http://dx.doi.org/10.1186/s13148-015-0161-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676897PMC
December 2015

DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights.

Epigenomics 2015 Oct 12;7(7):1137-53. Epub 2015 Jun 12.

Developmental Tumor Biology Laboratory, Hospital Sant Joan de Déu, Edificio Docente 4th floor, C/Santa Rosa 39-57, 08950 Esplugues de Llobregat, Barcelona, Spain.

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http://dx.doi.org/10.2217/epi.15.49DOI Listing
October 2015

Validation study of genes with hypermethylated promoter regions associated with prostate cancer recurrence.

Cancer Epidemiol Biomarkers Prev 2014 Jul 9;23(7):1331-9. Epub 2014 Apr 9.

Authors' Affiliations: Division of Public Health Sciences, Fred Hutchinson Cancer Research Center; Epidemiology, University of Washington, Seattle, Washington;

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http://cebp.aacrjournals.org/cgi/doi/10.1158/1055-9965.EPI-1
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http://dx.doi.org/10.1158/1055-9965.EPI-13-1000DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4082437PMC
July 2014

Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer.

Cancer Res 2014 Jun 11;74(11):3084-91. Epub 2014 Apr 11.

Authors' Affiliations: Departments of Health Sciences Research, Medical Oncology, Obstetrics and Gynecology, and Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota; Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles; Department of Research, Illumina, San Diego, California; Departments of Cancer Biology and Biostatistics, University of Kansas Medical Center, Kansas City, Kansas; and Vaccine and Gene Therapy Institute of Florida, Port St. Lucie, Florida

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http://dx.doi.org/10.1158/0008-5472.CAN-13-3198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054691PMC
June 2014

Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites.

Nucleic Acids Res 2014 Jan 20;42(1):109-27. Epub 2013 Sep 20.

VISN 3 Mental Illness Research, Education and Clinical Center (MIRECC), James J. Peters VA Medical Center, Bronx, NY, USA, The Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA, Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA, Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA, Research Division, Hospital for Special Surgery, New York, NY, USA, Illumina, Inc., San Diego, CA, USA and National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1093/nar/gkt838DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874157PMC
January 2014

A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells.

Stem Cell Reports 2014 Jan 26;2(1):36-43. Epub 2013 Dec 26.

Department of Human Genetics, Broad Stem Cell Research Center, David Geffen School of Medicine, University of California, Los Angeles, 695 Charles Young Drive, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1016/j.stemcr.2013.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916755PMC
January 2014

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Cancer Res 2013 Dec 23;73(24):7222-31. Epub 2013 Oct 23.

Authors' Affiliations: Biochemistry, Molecular Biology and Biophysics Department; Masonic Cancer Center, University of Minnesota, Minneapolis; Division of Biomedical Statistics and Informatics, Department of Health Sciences Research; Medical Genome Facility and Department of Laboratory Medicine and Pathology; Department of Laboratory Medicine and Pathology; Division of Medical Oncology, Department of Oncology; Division of Epidemiology, Department of Health Sciences Research; Division of Oncology Research, Department of Oncology; Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic; Women's Cancer Program, Mayo Clinic Cancer Center, Rochester, Minnesota; Department of Cancer Biology, University of Kansas, Kansas City, Kansas; Department of Obstetrics & Gynecology, University of Washington School of Medicine, Seattle, Washington; and Illumina Cambridge Ltd, Chesterford Research Park, Little Chesterford, Cambridge, United Kingdom.

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http://dx.doi.org/10.1158/0008-5472.CAN-13-1753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867573PMC
December 2013

Genome-wide methylation profiles reveal quantitative views of human aging rates.

Mol Cell 2013 Jan 21;49(2):359-367. Epub 2012 Nov 21.

Molecular Medicine Research Center and Department of Ophthalmology, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China.

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http://dx.doi.org/10.1016/j.molcel.2012.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3780611PMC
January 2013

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome.

Epigenetics 2011 Jun 1;6(6):692-702. Epub 2011 Jun 1.

Cancer Epigenetics and Biology Program (PEBC), Catalan Institute of Oncology, Bellvitge Biomedical Research Institute (IDIBELL), Spain.

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http://dx.doi.org/10.4161/epi.6.6.16196DOI Listing
June 2011

Genome-wide DNA methylation profiling.

Wiley Interdiscip Rev Syst Biol Med 2010 Mar-Apr;2(2):210-223

Illumina, Inc., 9885 Towne Centre Drive, San Diego, CA 92121, USA.

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https://www.dkfz.de/en/tox/download/gerh/pdf-files/Gerhauser
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http://doi.wiley.com/10.1002/wsbm.35
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http://dx.doi.org/10.1002/wsbm.35DOI Listing
February 2011

Array-based DNA methylation profiling of primary lymphomas of the central nervous system.

BMC Cancer 2009 Dec 21;9:455. Epub 2009 Dec 21.

Institute of Human Genetics, University Hospital Schleswig-Holstein Campus Kiel/Christian-Albrechts University Kiel, Germany.

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http://dx.doi.org/10.1186/1471-2407-9-455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2807878PMC
December 2009

DNA methylation and gene expression differences in children conceived in vitro or in vivo.

Hum Mol Genet 2009 Oct 15;18(20):3769-78. Epub 2009 Jul 15.

Fels Institute for Cancer Research and Molecular Biology, Temple University School of Medicine, Philadelphia, PA 19140, USA.

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http://dx.doi.org/10.1093/hmg/ddp319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2748887PMC
October 2009

Genome-wide DNA methylation profiling using Infinium® assay.

Epigenomics 2009 Oct;1(1):177-200

Illumina Inc., 9885 Towne Centre Dr., San Diego, CA 92121, USA.

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http://dx.doi.org/10.2217/epi.09.14DOI Listing
October 2009

GoldenGate assay for DNA methylation profiling.

Methods Mol Biol 2009 ;507:149-63

Illumina Inc., San Diego, CA, USA.

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http://dx.doi.org/10.1007/978-1-59745-522-0_12DOI Listing
March 2009

Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus.

Am J Med Genet A 2008 Dec;146A(24):3227-9

Institute of Human Genetics, University Hospital Schleswig-Holstein, Campus Kiel, Christian-Albrechts University, Kiel, Germany.

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http://dx.doi.org/10.1002/ajmg.a.32577DOI Listing
December 2008

Unraveling epigenetic regulation in embryonic stem cells.

Cell Stem Cell 2008 Feb;2(2):123-34

Illumina, Inc., San Diego, CA 92121, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S193459090800006
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http://dx.doi.org/10.1016/j.stem.2008.01.005DOI Listing
February 2008

Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors.

J Natl Cancer Inst 2007 Aug 8;99(16):1270-3. Epub 2007 Aug 8.

Center for Epigenetics, Institute of Basic Biomedical Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1093/jnci/djm069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5533193PMC
August 2007

DNA methylation markers of surfactant proteins in lung cancer.

Int J Oncol 2007 Jul;31(1):181-91

Department of Cellular and Molecular Physiology, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA.

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July 2007

Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters.

Proc Natl Acad Sci U S A 2007 Mar 14;104(12):4852-7. Epub 2007 Mar 14.

Department of Cellular and Molecular Medicine, University of California at San Diego School of Medicine, La Jolla, CA 92093-0651, USA.

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http://dx.doi.org/10.1073/pnas.0700715104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1821125PMC
March 2007

Efficient gene targeting in Drosophila with zinc-finger nucleases.

Genetics 2006 Apr 1;172(4):2391-403. Epub 2006 Feb 1.

Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1534/genetics.105.052829DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456366PMC
April 2006

Expression of an active tobacco mitogen-activated protein kinase kinase kinase enhances freezing tolerance in transgenic maize.

Proc Natl Acad Sci U S A 2004 Mar 11;101(9):3298-303. Epub 2004 Feb 11.

Plant Transformation Facility, Department of Agronomy, Iowa State University, Ames, IA 50011-1010, USA.

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http://dx.doi.org/10.1073/pnas.0308095100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC365784PMC
March 2004

Enhancing gene targeting with designed zinc finger nucleases.

Science 2003 May;300(5620):764

Department of Biochemistry, University of Utah School of Medicine, 20 North 1900 East, Salt Lake City, UT 84132-3201, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1079512
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http://dx.doi.org/10.1126/science.1079512DOI Listing
May 2003

Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.

Genetics 2002 Jul;161(3):1169-75

Department of Biochemistry, University of Utah School of Medicine, Medical Research and Education Building, 20 North 1900 East, Salt Lake City, UT 84132, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462166PMC
July 2002