Publications by authors named "Mariko Okada-Hatakeyama"

43Publications

The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression.

Cell Rep 2020 Jun;31(9):107724

Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan; RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan; Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2020.107724DOI Listing
June 2020

Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers.

J Mol Cell Biol 2019 08;11(8):649-664

Key Laboratory of Systems Biology, Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jmcb/mjy059DOI Listing
August 2019

High-Quality Overlapping Paired-End Reads for the Detection of A-to-I Editing on Small RNA.

Methods Mol Biol 2018 ;1823:167-183

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-8624-8_13DOI Listing
March 2019

Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.

Bioinformatics 2017 Dec;33(23):3696-3700

Molecular Network Control Genomics Unit, RIKEN Center for Life Science Technologies, Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btx503DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860321PMC
December 2017

FANTOM5 CAGE profiles of human and mouse samples.

Authors:
Shuhei Noguchi Takahiro Arakawa Shiro Fukuda Masaaki Furuno Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Kaoru Kaida Ai Kaiho Mutsumi Kanamori-Katayama Tsugumi Kawashima Miki Kojima Atsutaka Kubosaki Ri-Ichiroh Manabe Mitsuyoshi Murata Sayaka Nagao-Sato Kenichi Nakazato Noriko Ninomiya Hiromi Nishiyori-Sueki Shohei Noma Eri Saijyo Akiko Saka Mizuho Sakai Christophe Simon Naoko Suzuki Michihira Tagami Shoko Watanabe Shigehiro Yoshida Peter Arner Richard A Axton Magda Babina J Kenneth Baillie Timothy C Barnett Anthony G Beckhouse Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher Ailsa J Carlisle Hans C Clevers Carrie A Davis Michael Detmar Taeko Dohi Albert S B Edge Matthias Edinger Anna Ehrlund Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Mary C Farach-Carson Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley M Forrester Rie Fujita Jun-Ichi Furusawa Teunis B Geijtenbeek Thomas Gingeras Daniel Goldowitz Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Yuki Hasegawa Meenhard Herlyn Peter Heutink Kelly J Hitchens David A Hume Tomokatsu Ikawa Yuri Ishizu Chieko Kai Hiroshi Kawamoto Yuki I Kawamura Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura Sarah Klein S Peter Klinken Alan J Knox Soichi Kojima Haruhiko Koseki Shigeo Koyasu Weonju Lee Andreas Lennartsson Alan Mackay-Sim Niklas Mejhert Yosuke Mizuno Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Kelly J Morris Hozumi Motohashi Christine L Mummery Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Tadasuke Nozaki Soichi Ogishima Naganari Ohkura Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Swati Pradhan-Bhatt Xian-Yang Qin Michael Rehli Patrizia Rizzu Sugata Roy Antti Sajantila Shimon Sakaguchi Hiroki Sato Hironori Satoh Suzana Savvi Alka Saxena Christian Schmidl Claudio Schneider Gundula G Schulze-Tanzil Anita Schwegmann Guojun Sheng Jay W Shin Daisuke Sugiyama Takaaki Sugiyama Kim M Summers Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Andru Tomoiu Hiroo Toyoda Marc van de Wetering Linda M van den Berg Roberto Verardo Dipti Vijayan Christine A Wells Louise N Winteringham Ernst Wolvetang Yoko Yamaguchi Masayuki Yamamoto Chiyo Yanagi-Mizuochi Misako Yoneda Yohei Yonekura Peter G Zhang Silvia Zucchelli Imad Abugessaisa Erik Arner Jayson Harshbarger Atsushi Kondo Timo Lassmann Marina Lizio Serkan Sahin Thierry Sengstag Jessica Severin Hisashi Shimoji Masanori Suzuki Harukazu Suzuki Jun Kawai Naoto Kondo Masayoshi Itoh Carsten O Daub Takeya Kasukawa Hideya Kawaji Piero Carninci Alistair R R Forrest Yoshihide Hayashizaki

Sci Data 2017 08 29;4:170112. Epub 2017 Aug 29.

RIKEN Omics Science Center, Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/sdata.2017.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5574368PMC
August 2017

Oscillation dynamics underlie functional switching of NF-κB for B-cell activation.

NPJ Syst Biol Appl 2016 20;2:16024. Epub 2016 Oct 20.

Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/npjsba.2016.24DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516862PMC
October 2016

Mathematical modeling of atopic dermatitis reveals "double-switch" mechanisms underlying 4 common disease phenotypes.

J Allergy Clin Immunol 2017 Jun 5;139(6):1861-1872.e7. Epub 2016 Dec 5.

Department of Bioengineering, Imperial College London, London, United Kingdom. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jaci.2016.10.026DOI Listing
June 2017

Protective neutralizing influenza antibody response in the absence of T follicular helper cells.

Nat Immunol 2016 Dec 31;17(12):1447-1458. Epub 2016 Oct 31.

Laboratory for Cytokine Regulation, Research Center for Integrative Medical Science (IMS), RIKEN Yokohama Institute, Yokohama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ni.3563DOI Listing
December 2016

-TCF3 complex is required for the tumorigenicity of colorectal cancer cells.

Proc Natl Acad Sci U S A 2016 Nov 21;113(45):12739-12744. Epub 2016 Oct 21.

Laboratory of Molecular and Genetic Information, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan;

View Article

Download full-text PDF

Source
http://www.pnas.org/lookup/doi/10.1073/pnas.1605938113
Publisher Site
http://dx.doi.org/10.1073/pnas.1605938113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111701PMC
November 2016

MYU, a Target lncRNA for Wnt/c-Myc Signaling, Mediates Induction of CDK6 to Promote Cell Cycle Progression.

Cell Rep 2016 09 25;16(10):2554-2564. Epub 2016 Aug 25.

Laboratory of Molecular and Genetic Information, Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2016.08.015DOI Listing
September 2016

Stimulus-Dependent Inhibitor of Apoptosis Protein Expression Prolongs the Duration of B Cell Signalling.

Sci Rep 2016 06 9;6:27706. Epub 2016 Jun 9.

Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences (IMS), Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep27706DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4899755PMC
June 2016

Microarray expression analysis of genes involved in innate immune memory in peritoneal macrophages.

Genom Data 2016 Mar 1;7:90-1. Epub 2015 Dec 1.

Laboratory of Molecular Genetics, CREST Research Project of JST (Japan Science and Technology Agency), RIKEN Tsukuba institute, Tsukuba 305-0074, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gdata.2015.11.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778626PMC
March 2016

Genetic Network Inference Using Hierarchical Structure.

Front Physiol 2016 23;7:57. Epub 2016 Feb 23.

Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences Yokohama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fphys.2016.00057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4763037PMC
March 2016

Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1.

Proc Natl Acad Sci U S A 2016 Feb 14;113(5):1273-8. Epub 2016 Jan 14.

Laboratory of Molecular and Genetic Information, Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-0032, Japan;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1500992113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747749PMC
February 2016

The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.

Nat Immunol 2015 Oct 31;16(10):1034-43. Epub 2015 Aug 31.

Laboratory of Molecular Genetics, CREST Research Project of the Japan Science and Technology Agency, RIKEN Tsukuba Institute, Tsukuba, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ni.3257DOI Listing
October 2015

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.

Authors:
Erik Arner Carsten O Daub Kristoffer Vitting-Seerup Robin Andersson Berit Lilje Finn Drabløs Andreas Lennartsson Michelle Rönnerblad Olga Hrydziuszko Morana Vitezic Tom C Freeman Ahmad M N Alhendi Peter Arner Richard Axton J Kenneth Baillie Anthony Beckhouse Beatrice Bodega James Briggs Frank Brombacher Margaret Davis Michael Detmar Anna Ehrlund Mitsuhiro Endoh Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley Forrester Daniel Goldowitz Reto Guler Thomas Ha Mitsuko Hara Meenhard Herlyn Tomokatsu Ikawa Chieko Kai Hiroshi Kawamoto Levon M Khachigian S Peter Klinken Soichi Kojima Haruhiko Koseki Sarah Klein Niklas Mejhert Ken Miyaguchi Yosuke Mizuno Mitsuru Morimoto Kelly J Morris Christine Mummery Yutaka Nakachi Soichi Ogishima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Xian-Yang Qin Sugata Roy Hiroki Sato Suzana Savvi Alka Saxena Anita Schwegmann Daisuke Sugiyama Rolf Swoboda Hiroshi Tanaka Andru Tomoiu Louise N Winteringham Ernst Wolvetang Chiyo Yanagi-Mizuochi Misako Yoneda Susan Zabierowski Peter Zhang Imad Abugessaisa Nicolas Bertin Alexander D Diehl Shiro Fukuda Masaaki Furuno Jayson Harshbarger Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Yuri Ishizu Masayoshi Itoh Tsugumi Kawashima Miki Kojima Naoto Kondo Marina Lizio Terrence F Meehan Christopher J Mungall Mitsuyoshi Murata Hiromi Nishiyori-Sueki Serkan Sahin Sayaka Nagao-Sato Jessica Severin Michiel J L de Hoon Jun Kawai Takeya Kasukawa Timo Lassmann Harukazu Suzuki Hideya Kawaji Kim M Summers Christine Wells David A Hume Alistair R R Forrest Albin Sandelin Piero Carninci Yoshihide Hayashizaki

Science 2015 Feb 12;347(6225):1010-4. Epub 2015 Feb 12.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1259418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681433PMC
February 2015

Feedforward regulation of mRNA stability by prolonged extracellular signal-regulated kinase activity.

FEBS J 2015 Feb 8;282(4):613-29. Epub 2015 Jan 8.

Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences (IMS), Tsurumi-ku, Yokohama, Kanagawa, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/febs.13172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334673PMC
February 2015

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Fluctuation of Rac1 activity is associated with the phenotypic and transcriptional heterogeneity of glioma cells.

J Cell Sci 2014 Apr 12;127(Pt 8):1805-15. Epub 2014 Feb 12.

Department of Pathology and Biology of Diseases, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/jcs.139733DOI Listing
April 2014

Statistical significance of combinatorial regulations.

Proc Natl Acad Sci U S A 2013 Aug 23;110(32):12996-3001. Epub 2013 Jul 23.

Department of Computer Science, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan.

View Article

Download full-text PDF

Source
http://www.pnas.org/content/110/32/12996.full.pdf
Web Search
http://www.pnas.org/cgi/doi/10.1073/pnas.1302233110
Publisher Site
http://dx.doi.org/10.1073/pnas.1302233110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740841PMC
August 2013

Phase responses of oscillating components in a signaling pathway.

Front Physiol 2013 5;4:68. Epub 2013 Apr 5.

Laboratory for Cellular Systems Modeling, RIKEN Research Center for Allergy and Immunology Yokohama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fphys.2013.00068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617506PMC
April 2013

Individual hematopoietic stem cells in human bone marrow of patients with aplastic anemia or myelodysplastic syndrome stably give rise to limited cell lineages.

Stem Cells 2013 Mar;31(3):536-46

Clinical Laboratory Science, Division of Health Sciences, Kanazawa University Graduate School of Medical Science, Kanazawa, Ishikawa, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/stem.1301DOI Listing
March 2013

Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells.

Proc Natl Acad Sci U S A 2012 Aug 13;109(35):13984-9. Epub 2012 Aug 13.

Cellular Informatics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1200464109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435199PMC
August 2012

Catching transcriptional regulation by thermostatistical modeling.

Phys Biol 2012 Aug 7;9(4):045007. Epub 2012 Aug 7.

Systems Biology Ireland, University College Dublin, Belfield, Dublin 4, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1088/1478-3975/9/4/045007DOI Listing
August 2012

An ErbB receptor-mediated AP-1 regulatory network is modulated by STAT3 and c-MYC during calcium-dependent keratinocyte differentiation.

Exp Dermatol 2012 Apr;21(4):293-8

Laboratory for Cellular Systems Modeling, RIKEN Research Center for Allergy and Immunology, Yokohama, Kanagawa, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1600-0625.2012.01453.xDOI Listing
April 2012

A rank-based statistical test for measuring synergistic effects between two gene sets.

Bioinformatics 2011 Sep 23;27(17):2399-405. Epub 2011 Jun 23.

Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.

View Article

Download full-text PDF

Source
http://bioinformatics.oxfordjournals.org/content/early/2011/
Web Search
http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btr382DOI Listing
September 2011

Epidermal growth factor receptor mutation in combination with expression of MIG6 alters gefitinib sensitivity.

BMC Syst Biol 2011 Feb 18;5:29. Epub 2011 Feb 18.

Laboratory for Cellular Systems Modeling, RIKEN Research Center for Allergy and Immunology (RCAI), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-5-29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224393PMC
February 2011

Integrated quantitative analysis of the phosphoproteome and transcriptome in tamoxifen-resistant breast cancer.

J Biol Chem 2011 Jan 2;286(1):818-29. Epub 2010 Nov 2.

Medical Proteomics Laboratory, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M110.156877DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013041PMC
January 2011

Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics.

Cell 2010 May 20;141(5):884-96. Epub 2010 May 20.

Computational Systems Biology Research Group, Advanced Computational Sciences Department, RIKEN Advanced Science Institute, 1-7-22 Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cell.2010.03.054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2888034PMC
May 2010

Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells.

BMC Genomics 2009 Nov 20;10:545. Epub 2009 Nov 20.

Cellular Systems Modeling Team, Computational Systems Biology Research Group, Advanced Computational Sciences Department, RIKEN Advanced Science Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-10-545DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785842PMC
November 2009