Marieke L Kuijjer

Marieke L Kuijjer

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Marieke L Kuijjer

Marieke L Kuijjer

Publications by authors named "Marieke L Kuijjer"

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23Publications

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Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data.

BMC Bioinformatics 2017 Oct 3;18(1):437. Epub 2017 Oct 3.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.

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http://dx.doi.org/10.1186/s12859-017-1847-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5627434PMC
October 2017

Exploring regulation in tissues with eQTL networks.

Proc Natl Acad Sci U S A 2017 09 29;114(37):E7841-E7850. Epub 2017 Aug 29.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02115;

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http://dx.doi.org/10.1073/pnas.1707375114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5604022PMC
September 2017

Regulatory network changes between cell lines and their tissues of origin.

BMC Genomics 2017 Sep 12;18(1):723. Epub 2017 Sep 12.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, USA.

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http://dx.doi.org/10.1186/s12864-017-4111-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596945PMC
September 2017

PyPanda: a Python package for gene regulatory network reconstruction.

Bioinformatics 2016 11 10;32(21):3363-3365. Epub 2016 Jul 10.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02215, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btw422DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5079480PMC
November 2016

Genome-wide analyses on high-grade osteosarcoma: making sense of a genomically most unstable tumor.

Int J Cancer 2013 Dec 16;133(11):2512-21. Epub 2013 Mar 16.

Department of Pathology, Leiden University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1002/ijc.28124DOI Listing
December 2013

Modulation of the osteosarcoma expression phenotype by microRNAs.

PLoS One 2012 25;7(10):e48086. Epub 2012 Oct 25.

The EuroBoNet Network of Excellence on Bone Tumours, Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048086PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3485010PMC
May 2013

Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data.

Genes Chromosomes Cancer 2012 Jul 27;51(7):696-706. Epub 2012 Mar 27.

Department of Pathology, Leiden University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1002/gcc.21956DOI Listing
July 2012