Maria Krestyaninova

Maria Krestyaninova

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Maria Krestyaninova

Maria Krestyaninova

Publications by authors named "Maria Krestyaninova"

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17Publications

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Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research.

Authors:
Ola Spjuth Maria Krestyaninova Janna Hastings Huei-Yi Shen Jani Heikkinen Melanie Waldenberger Arnulf Langhammer Claes Ladenvall Tõnu Esko Mats-Åke Persson Jon Heggland Joern Dietrich Sandra Ose Christian Gieger Janina S Ried Annette Peters Isabel Fortier Eco J C de Geus Janis Klovins Linda Zaharenko Gonneke Willemsen Jouke-Jan Hottenga Jan-Eric Litton Juha Karvanen Dorret I Boomsma Leif Groop Johan Rung Juni Palmgren Nancy L Pedersen Mark I McCarthy Cornelia M van Duijn Kristian Hveem Andres Metspalu Samuli Ripatti Inga Prokopenko Jennifer R Harris

Eur J Hum Genet 2016 Apr 26;24(4):521-8. Epub 2015 Aug 26.

Division of Epidemiology, Department of Genes and Environment, The Norwegian Institute of Public Health, Oslo, Norway.

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http://dx.doi.org/10.1038/ejhg.2015.165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929882PMC
April 2016

Requirements for semantic biobanks.

Authors:
André Q Andrade Markus Kreuzthaler Janna Hastings Maria Krestyaninova Stefan Schulz

Stud Health Technol Inform 2012 ;180:569-73

School of Information Science, Federal University of Minas Gerais, Brazil.

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January 2013

Mapping cis- and trans-regulatory effects across multiple tissues in twins.

Authors:
Elin Grundberg Kerrin S Small Åsa K Hedman Alexandra C Nica Alfonso Buil Sarah Keildson Jordana T Bell Tsun-Po Yang Eshwar Meduri Amy Barrett James Nisbett Magdalena Sekowska Alicja Wilk So-Youn Shin Daniel Glass Mary Travers Josine L Min Sue Ring Karen Ho Gudmar Thorleifsson Augustine Kong Unnur Thorsteindottir Chrysanthi Ainali Antigone S Dimas Neelam Hassanali Catherine Ingle David Knowles Maria Krestyaninova Christopher E Lowe Paola Di Meglio Stephen B Montgomery Leopold Parts Simon Potter Gabriela Surdulescu Loukia Tsaprouni Sophia Tsoka Veronique Bataille Richard Durbin Frank O Nestle Stephen O'Rahilly Nicole Soranzo Cecilia M Lindgren Krina T Zondervan Kourosh R Ahmadi Eric E Schadt Kari Stefansson George Davey Smith Mark I McCarthy Panos Deloukas Emmanouil T Dermitzakis Tim D Spector

Nat Genet 2012 Oct 2;44(10):1084-9. Epub 2012 Sep 2.

Wellcome Trust Sanger Institute, Hinxton, UK.

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http://dx.doi.org/10.1038/ng.2394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784328PMC
October 2012

A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.

Authors:
George Nicholson Mattias Rantalainen Jia V Li Anthony D Maher Daniel Malmodin Kourosh R Ahmadi Johan H Faber Amy Barrett Josine L Min N William Rayner Henrik Toft Maria Krestyaninova Juris Viksna Sudeshna Guha Neogi Marc-Emmanuel Dumas Ugis Sarkans Peter Donnelly Thomas Illig Jerzy Adamski Karsten Suhre Maxine Allen Krina T Zondervan Tim D Spector Jeremy K Nicholson John C Lindon Dorrit Baunsgaard Elaine Holmes Mark I McCarthy Chris C Holmes

PLoS Genet 2011 Sep 8;7(9):e1002270. Epub 2011 Sep 8.

Department of Statistics, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1002270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169529PMC
September 2011

Human metabolic profiles are stably controlled by genetic and environmental variation.

Authors:
George Nicholson Mattias Rantalainen Anthony D Maher Jia V Li Daniel Malmodin Kourosh R Ahmadi Johan H Faber Ingileif B Hallgrímsdóttir Amy Barrett Henrik Toft Maria Krestyaninova Juris Viksna Sudeshna Guha Neogi Marc-Emmanuel Dumas Ugis Sarkans The Molpage Consortium Bernard W Silverman Peter Donnelly Jeremy K Nicholson Maxine Allen Krina T Zondervan John C Lindon Tim D Spector Mark I McCarthy Elaine Holmes Dorrit Baunsgaard Chris C Holmes

Mol Syst Biol 2011 Aug 30;7:525. Epub 2011 Aug 30.

Department of Statistics, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1038/msb.2011.57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3202796PMC
August 2011

SAIL--a software system for sample and phenotype availability across biobanks and cohorts.

Authors:
Mikhail Gostev Julio Fernandez-Banet Johan Rung Joern Dietrich Inga Prokopenko Samuli Ripatti Mark I McCarthy Alvis Brazma Maria Krestyaninova

Bioinformatics 2011 Feb 17;27(4):589-91. Epub 2010 Dec 17.

Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btq693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035801PMC
February 2011

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.

Authors:
Alexey V Antonov Esther E Schmidt Sabine Dietmann Maria Krestyaninova Henning Hermjakob

Nucleic Acids Res 2010 Jul 2;38(Web Server issue):W78-83. Epub 2010 Jun 2.

Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkq482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896180PMC
July 2010

Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.

Authors:
Thorgeir E Thorgeirsson Daniel F Gudbjartsson Ida Surakka Jacqueline M Vink Najaf Amin Frank Geller Patrick Sulem Thorunn Rafnar Tõnu Esko Stefan Walter Christian Gieger Rajesh Rawal Massimo Mangino Inga Prokopenko Reedik Mägi Kaisu Keskitalo Iris H Gudjonsdottir Solveig Gretarsdottir Hreinn Stefansson John R Thompson Yurii S Aulchenko Mari Nelis Katja K Aben Martin den Heijer Asger Dirksen Haseem Ashraf Nicole Soranzo Ana M Valdes Claire Steves André G Uitterlinden Albert Hofman Anke Tönjes Peter Kovacs Jouke Jan Hottenga Gonneke Willemsen Nicole Vogelzangs Angela Döring Norbert Dahmen Barbara Nitz Michele L Pergadia Berta Saez Veronica De Diego Victoria Lezcano Maria D Garcia-Prats Samuli Ripatti Markus Perola Johannes Kettunen Anna-Liisa Hartikainen Anneli Pouta Jaana Laitinen Matti Isohanni Shen Huei-Yi Maxine Allen Maria Krestyaninova Alistair S Hall Gregory T Jones Andre M van Rij Thomas Mueller Benjamin Dieplinger Meinhard Haltmayer Steinn Jonsson Stefan E Matthiasson Hogni Oskarsson Thorarinn Tyrfingsson Lambertus A Kiemeney Jose I Mayordomo Jes S Lindholt Jesper Holst Pedersen Wilbur A Franklin Holly Wolf Grant W Montgomery Andrew C Heath Nicholas G Martin Pamela A F Madden Ina Giegling Dan Rujescu Marjo-Riitta Järvelin Veikko Salomaa Michael Stumvoll Tim D Spector H-Erich Wichmann Andres Metspalu Nilesh J Samani Brenda W Penninx Ben A Oostra Dorret I Boomsma Henning Tiemeier Cornelia M van Duijn Jaakko Kaprio Jeffrey R Gulcher Mark I McCarthy Leena Peltonen Unnur Thorsteinsdottir Kari Stefansson

Nat Genet 2010 May 25;42(5):448-53. Epub 2010 Apr 25.

[1] deCODE Genetics, Reykjavik, Iceland. [2] Center for Biomolecular Science and Engineering, Jack Baskin School of Engineering, University of California, Santa Cruz, California, USA.

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http://dx.doi.org/10.1038/ng.573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3080600PMC
May 2010

A System for Information Management in BioMedical Studies--SIMBioMS.

Authors:
Maria Krestyaninova Andris Zarins Juris Viksna Natalja Kurbatova Peteris Rucevskis Sudeshna Guha Neogi Mike Gostev Teemu Perheentupa Juha Knuuttila Amy Barrett Ilkka Lappalainen Johan Rung Karlis Podnieks Ugis Sarkans Mark I McCarthy Alvis Brazma

Bioinformatics 2009 Oct 24;25(20):2768-9. Epub 2009 Jul 24.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB101SD, UK.

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http://bioinformatics.oxfordjournals.org/content/early/2009/
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http://dx.doi.org/10.1093/bioinformatics/btp420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759553PMC
October 2009

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.

Authors:
Helen Parkinson Misha Kapushesky Nikolay Kolesnikov Gabriella Rustici Mohammad Shojatalab Niran Abeygunawardena Hugo Berube Miroslaw Dylag Ibrahim Emam Anna Farne Ele Holloway Margus Lukk James Malone Roby Mani Ekaterina Pilicheva Tim F Rayner Faisal Rezwan Anjan Sharma Eleanor Williams Xiangqun Zheng Bradley Tomasz Adamusiak Marco Brandizi Tony Burdett Richard Coulson Maria Krestyaninova Pavel Kurnosov Eamonn Maguire Sudeshna Guha Neogi Philippe Rocca-Serra Susanna-Assunta Sansone Nataliya Sklyar Mengyao Zhao Ugis Sarkans Alvis Brazma

Nucleic Acids Res 2009 Jan 10;37(Database issue):D868-72. Epub 2008 Nov 10.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkn889DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686529PMC
January 2009

Variants in MTNR1B influence fasting glucose levels.

Authors:
Inga Prokopenko Claudia Langenberg Jose C Florez Richa Saxena Nicole Soranzo Gudmar Thorleifsson Ruth J F Loos Alisa K Manning Anne U Jackson Yurii Aulchenko Simon C Potter Michael R Erdos Serena Sanna Jouke-Jan Hottenga Eleanor Wheeler Marika Kaakinen Valeriya Lyssenko Wei-Min Chen Kourosh Ahmadi Jacques S Beckmann Richard N Bergman Murielle Bochud Lori L Bonnycastle Thomas A Buchanan Antonio Cao Alessandra Cervino Lachlan Coin Francis S Collins Laura Crisponi Eco J C de Geus Abbas Dehghan Panos Deloukas Alex S F Doney Paul Elliott Nelson Freimer Vesela Gateva Christian Herder Albert Hofman Thomas E Hughes Sarah Hunt Thomas Illig Michael Inouye Bo Isomaa Toby Johnson Augustine Kong Maria Krestyaninova Johanna Kuusisto Markku Laakso Noha Lim Ulf Lindblad Cecilia M Lindgren Owen T McCann Karen L Mohlke Andrew D Morris Silvia Naitza Marco Orrù Colin N A Palmer Anneli Pouta Joshua Randall Wolfgang Rathmann Jouko Saramies Paul Scheet Laura J Scott Angelo Scuteri Stephen Sharp Eric Sijbrands Jan H Smit Kijoung Song Valgerdur Steinthorsdottir Heather M Stringham Tiinamaija Tuomi Jaakko Tuomilehto André G Uitterlinden Benjamin F Voight Dawn Waterworth H-Erich Wichmann Gonneke Willemsen Jacqueline C M Witteman Xin Yuan Jing Hua Zhao Eleftheria Zeggini David Schlessinger Manjinder Sandhu Dorret I Boomsma Manuela Uda Tim D Spector Brenda Wjh Penninx David Altshuler Peter Vollenweider Marjo Riitta Jarvelin Edward Lakatta Gerard Waeber Caroline S Fox Leena Peltonen Leif C Groop Vincent Mooser L Adrienne Cupples Unnur Thorsteinsdottir Michael Boehnke Inês Barroso Cornelia Van Duijn Josée Dupuis Richard M Watanabe Kari Stefansson Mark I McCarthy Nicholas J Wareham James B Meigs Gonçalo R Abecasis

Nat Genet 2009 Jan 7;41(1):77-81. Epub 2008 Dec 7.

[1] Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford OX3 7LJ, UK. [2] Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK. [3] These authors contributed equally to this work.

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http://dx.doi.org/10.1038/ng.290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682768PMC
January 2009

PASSIM--an open source software system for managing information in biomedical studies.

Authors:
Juris Viksna Edgars Celms Martins Opmanis Karlis Podnieks Peteris Rucevskis Andris Zarins Amy Barrett Sudeshna Guha Neogi Maria Krestyaninova Mark I McCarthy Alvis Brazma Ugis Sarkans

BMC Bioinformatics 2007 Feb 9;8:52. Epub 2007 Feb 9.

Institute of Mathematics and Computer Science, Riga, University of Latvia, Latvia.

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http://dx.doi.org/10.1186/1471-2105-8-52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1803798PMC
February 2007

Standards for systems biology.

Authors:
Alvis Brazma Maria Krestyaninova Ugis Sarkans

Nat Rev Genet 2006 Aug;7(8):593-605

European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

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http://dx.doi.org/10.1038/nrg1922DOI Listing
August 2006

InterPro, progress and status in 2005.

Authors:
Nicola J Mulder Rolf Apweiler Teresa K Attwood Amos Bairoch Alex Bateman David Binns Paul Bradley Peer Bork Phillip Bucher Lorenzo Cerutti Richard Copley Emmanuel Courcelle Ujjwal Das Richard Durbin Wolfgang Fleischmann Julian Gough Daniel Haft Nicola Harte Nicolas Hulo Daniel Kahn Alexander Kanapin Maria Krestyaninova David Lonsdale Rodrigo Lopez Ivica Letunic Martin Madera John Maslen Jennifer McDowall Alex Mitchell Anastasia N Nikolskaya Sandra Orchard Marco Pagni Chris P Ponting Emmanuel Quevillon Jeremy Selengut Christian J A Sigrist Ville Silventoinen David J Studholme Robert Vaughan Cathy H Wu

Nucleic Acids Res 2005 Jan;33(Database issue):D201-5

EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/nar/gki106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540060PMC
January 2005

Towards reconstruction of gene networks from expression data by supervised learning.

Authors:
Lev A Soinov Maria A Krestyaninova Alvis Brazma

Genome Biol 2003 6;4(1):R6. Epub 2003 Jan 6.

Microarray Informatics Group, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151290PMC
http://dx.doi.org/10.1186/gb-2003-4-1-r6DOI Listing
March 2003

The InterPro Database, 2003 brings increased coverage and new features.

Authors:
Nicola J Mulder Rolf Apweiler Teresa K Attwood Amos Bairoch Daniel Barrell Alex Bateman David Binns Margaret Biswas Paul Bradley Peer Bork Phillip Bucher Richard R Copley Emmanuel Courcelle Ujjwal Das Richard Durbin Laurent Falquet Wolfgang Fleischmann Sam Griffiths-Jones Daniel Haft Nicola Harte Nicolas Hulo Daniel Kahn Alexander Kanapin Maria Krestyaninova Rodrigo Lopez Ivica Letunic David Lonsdale Ville Silventoinen Sandra E Orchard Marco Pagni David Peyruc Chris P Ponting Jeremy D Selengut Florence Servant Christian J A Sigrist Robert Vaughan Evgueni M Zdobnov

Nucleic Acids Res 2003 Jan;31(1):315-8

EMBL Outstation-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165493PMC
http://dx.doi.org/10.1093/nar/gkg046DOI Listing
January 2003

InterPro: an integrated documentation resource for protein families, domains and functional sites.

Authors:
Nicola J Mulder Rolf Apweiler Terri K Attwood Amos Bairoch Alex Bateman David Binns Margaret Biswas Paul Bradley Peer Bork Phillip Bucher Richard Copley Emmanuel Courcelle Richard Durbin Laurent Falquet Wolfgang Fleischmann Jerome Gouzy Sam Griffith-Jones Daniel Haft Henning Hermjakob Nicolas Hulo Daniel Kahn Alexander Kanapin Maria Krestyaninova Rodrigo Lopez Ivica Letunic Sandra Orchard Marco Pagni David Peyruc Chris P Ponting Florence Servant Christian J A Sigrist

Brief Bioinform 2002 Sep;3(3):225-35

EMBL Outstation, European Bioinformatics Institute, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/bib/3.3.225DOI Listing
September 2002