Maria D Logacheva

Maria D Logacheva

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Maria D Logacheva

Publications by authors named "Maria D Logacheva"

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Hidden cases of tRNA gene duplication and remolding in mitochondrial genomes of amphipods.

Mol Phylogenet Evol 2020 Mar 15;144:106710. Epub 2019 Dec 15.

Laboratory of Molecular Systematics, Limnological Institute, Irkutsk, Russian Federation; Faculty of Biology and Soil Studies, Irkutsk State University, Irkutsk, Russian Federation.

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http://dx.doi.org/10.1016/j.ympev.2019.106710DOI Listing
March 2020

Complete plastome sequencing of Allium paradoxum reveals unusual rearrangements and the loss of the ndh genes as compared to Allium ursinum and other onions.

Gene 2020 Feb 4;726:144154. Epub 2019 Oct 4.

Lomonosov Moscow State University, Leninskie Gory, GSP-1, Moscow 119991, Russia; Central Research Institute of Epidemiology, Novogireevskaya St. 3a, Moscow 111123, Russia. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2019.144154DOI Listing
February 2020

has one of the most reduced and mutated plastid genomes known.

PeerJ 2019 12;7:e7500. Epub 2019 Sep 12.

Skolkovo Institute of Science and Technology, Moscow, Russia.

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https://peerj.com/articles/7500
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http://dx.doi.org/10.7717/peerj.7500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6745192PMC
September 2019

Coding palindromes in mitochondrial genes of Nematomorpha.

Nucleic Acids Res 2019 07;47(13):6858-6870

Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskiye Gory 1-40, Moscow 119991, Russian Federation.

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http://dx.doi.org/10.1093/nar/gkz517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6649704PMC
July 2019

Characterization of the mitochondrial genome of the MAX1 type of cytoplasmic male-sterile sunflower.

BMC Plant Biol 2019 Feb 15;19(Suppl 1):51. Epub 2019 Feb 15.

University of Rostock, Institute of Biological Sciences, Plant Genetics, Rostock, Germany.

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http://dx.doi.org/10.1186/s12870-019-1637-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394147PMC
February 2019

An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana.

BMC Plant Biol 2019 Feb 15;19(Suppl 1):49. Epub 2019 Feb 15.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Bolshoy Karetny per. 19, build.1, Moscow, 127051, Russia.

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http://dx.doi.org/10.1186/s12870-019-1636-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393959PMC
February 2019

FACS Isolation of Viable Cells in Different Cell Cycle Stages from Asynchronous Culture for RNA Sequencing.

Methods Mol Biol 2018 ;1745:315-335

Department of Biology, School of Sciences and Technology, Nazarbayev University, Astana, Kazakhstan.

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http://dx.doi.org/10.1007/978-1-4939-7680-5_18DOI Listing
January 2019

Comparative Analysis of Developmental Transcriptome Maps of Arabidopsis thaliana and Solanum lycopersicum.

Genes (Basel) 2019 01 15;10(1). Epub 2019 Jan 15.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Bolshoy Karetny per. 19, build. 1, 127051 Moscow, Russia.

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http://dx.doi.org/10.3390/genes10010050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6356586PMC
January 2019

RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants.

BMC Genomics 2018 Aug 9;19(1):602. Epub 2018 Aug 9.

Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia.

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http://dx.doi.org/10.1186/s12864-018-4968-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085651PMC
August 2018

FtSAD2 and FtJAZ1 regulate activity of the FtMYB11 transcription repressor of the phenylpropanoid pathway in Fagopyrum tataricum.

New Phytol 2017 Nov 19;216(3):814-828. Epub 2017 Jul 19.

College of Environmental Sciences, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.

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http://doi.wiley.com/10.1111/nph.14692
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http://dx.doi.org/10.1111/nph.14692DOI Listing
November 2017

The systematic position of Dryopteris blanfordii subsp. nigrosquamosa (Ching) Fraser-Jenkins within the genus Adans.

PhytoKeys 2017 15(90):89-112. Epub 2017 Nov 15.

Department of High Plants, Biological Faculty, Lomonosov Moscow State University, Leninskie gory, 1, 12, Moscow, Russia, 119234.

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http://dx.doi.org/10.3897/phytokeys.90.14745DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784233PMC
November 2017

High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution.

Plant J 2017 Jul 12;91(2):278-291. Epub 2017 Jun 12.

A. N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119991, Russia.

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http://dx.doi.org/10.1111/tpj.13563DOI Listing
July 2017

Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals.

PLoS One 2016 18;11(10):e0165072. Epub 2016 Oct 18.

Belozersky Institute for Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 1, build. 40, Moscow 119991, Russian Federation.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0165072PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5068742PMC
May 2017

A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling.

Plant J 2016 12 19;88(6):1058-1070. Epub 2016 Nov 19.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, 127051, Russia.

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http://dx.doi.org/10.1111/tpj.13312DOI Listing
December 2016

Evolution of mitochondrial genomes in Baikalian amphipods.

BMC Genomics 2016 12 28;17(Suppl 14):1016. Epub 2016 Dec 28.

Laboratory of Molecular Systematics, Limnological Institute, Siberian Branch of Russian Academy of Sciences, Irkutsk, 664033, Russian Federation.

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http://dx.doi.org/10.1186/s12864-016-3357-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5249044PMC
December 2016

The complete mitochondrial genome of a deep-water Baikalian amphipoda Brachyuropus grewingkii (Dybowsky, 1874).

Mitochondrial DNA A DNA Mapp Seq Anal 2016 11 20;27(6):4158-4159. Epub 2015 Jan 20.

a Laboratory of Molecular Systematics , Limnological Institute, Siberian Branch of Russian Academy of Sciences , Irkutsk , Russia.

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http://dx.doi.org/10.3109/19401736.2014.1003891DOI Listing
November 2016

Highly efficient primed spacer acquisition from targets destroyed by the Escherichia coli type I-E CRISPR-Cas interfering complex.

Proc Natl Acad Sci U S A 2016 07 20;113(27):7626-31. Epub 2016 Jun 20.

Waksman Institute of Microbiology, Rutgers, the State University of New Jersey, Piscataway, NJ 08854; Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia; Institute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia; Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia; Peter the Great St. Petersburg Polytechnic University, St. Petersburg 195251, Russia;

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http://dx.doi.org/10.1073/pnas.1602639113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941421PMC
July 2016

The Genome of Intoshia linei Affirms Orthonectids as Highly Simplified Spiralians.

Curr Biol 2016 07 30;26(13):1768-1774. Epub 2016 Jun 30.

Belozersky Institute for Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119991, Russian Federation; Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, Russian Federation. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2016.05.007DOI Listing
July 2016

Biliary Microbiota, Gallstone Disease and Infection with Opisthorchis felineus.

PLoS Negl Trop Dis 2016 07 22;10(7):e0004809. Epub 2016 Jul 22.

Research Center for Neglected Diseases of Poverty, Department of Microbiology, Immunology and Tropical Medicine, School of Medicine & Health Sciences, George Washington University, Washington, D.C., United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0004809DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4957795PMC
July 2016

Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives.

Sci Rep 2016 07 25;6:30042. Epub 2016 Jul 25.

Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia.

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http://dx.doi.org/10.1038/srep30042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4958920PMC
July 2016

The complete mitochondrial genome of Baikalian amphipoda Eulimnogammarus vittatus Dybowsky, 1874.

Mitochondrial DNA A DNA Mapp Seq Anal 2016 05 29;27(3):1795-7. Epub 2014 Sep 29.

a Laboratory of Molecular Systematics, Limnological Institute, Siberian Branch of Russian Academy of Sciences , Irkutsk , Russia .

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http://dx.doi.org/10.3109/19401736.2014.963817DOI Listing
May 2016

Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow.

Front Microbiol 2016 31;7:398. Epub 2016 Mar 31.

Department of Molecular Genetics of Cell, Institute of Molecular Genetics, Russian Academy of SciencesMoscow, Russia; Research Complex of "Nanobiotechnology", Saint-Petersburg State Polytechnical UniversitySaint-Petersburg, Russia; Center for Data-Intensive Biomedicine and Biotechnology, Skolkovo Institute of Science and TechnologySkolkovo, Russia.

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http://dx.doi.org/10.3389/fmicb.2016.00398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4814470PMC
April 2016

Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus.

Parasitol Int 2016 Feb 9;65(1):12-19. Epub 2015 Sep 9.

Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, pr. Lavrentieva 10, Novosibirsk 630090, Russia.

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http://dx.doi.org/10.1016/j.parint.2015.09.002DOI Listing
February 2016

Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.

mBio 2015 Dec 1;6(6):e01498-15. Epub 2015 Dec 1.

Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic Canadian Institute for Advanced Research, Toronto, Canada

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http://dx.doi.org/10.1128/mBio.01498-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669381PMC
December 2015

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

Mol Biol Evol 2015 Oct 10;32(10):2775-83. Epub 2015 Jul 10.

School of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia Department of Ecology and Evolutionary Biology, University of Michigan

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http://dx.doi.org/10.1093/molbev/msv153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4576712PMC
October 2015

RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation.

BMC Genomics 2015 Jun 18;16:466. Epub 2015 Jun 18.

Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, 127051, Russia.

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http://dx.doi.org/10.1186/s12864-015-1688-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4470339PMC
June 2015

Draft Genome Sequences of Geobacillus stearothermophilus Strains 22 and 53, Isolated from the Garga Hot Spring in the Barguzin River Valley of the Russian Federation.

Genome Announc 2014 Nov 20;2(6). Epub 2014 Nov 20.

Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russian Federation.

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http://dx.doi.org/10.1128/genomeA.01205-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4239359PMC
November 2014

Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus.

PLoS Genet 2014 Oct 9;10(10):e1004696. Epub 2014 Oct 9.

Laboratory of Molecular genetics, Russian Institute of Fisheries and Oceanology, Russian Federal Research Institute of Fisheries and Oceanography, Moscow, Russia; N. K. Koltsov Institute of Developmental Biology RAS, Moscow, Russia.

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http://dx.doi.org/10.1371/journal.pgen.1004696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191950PMC
October 2014

Draft Genome Sequence of Geobacillus icigianus Strain G1w1T Isolated from Hot Springs in the Valley of Geysers, Kamchatka (Russian Federation).

Genome Announc 2014 Oct 23;2(5). Epub 2014 Oct 23.

Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russian Federation.

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http://dx.doi.org/10.1128/genomeA.01098-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208339PMC
October 2014

The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes.

Epigenetics 2014 Jul 15;9(7):951-63. Epub 2014 Apr 15.

Institute of Gene Biology; Russian Academy of Sciences; Moscow, Russia; Department of Molecular Biology; Lomonosov Moscow State University; Moscow, Russia; LIA 1066 French-Russian Joint Cancer Research Laboratory; Villejuif, France and Moscow, Russia.

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http://dx.doi.org/10.4161/epi.28794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143410PMC
July 2014

Pervasive generation of oppositely oriented spacers during CRISPR adaptation.

Nucleic Acids Res 2014 May 11;42(9):5907-16. Epub 2014 Apr 11.

St Petersburg State Polytechnical University, St Petersburg, 195251, Russia

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http://dx.doi.org/10.1093/nar/gku226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4027179PMC
May 2014

Paratrypanosoma is a novel early-branching trypanosomatid.

Curr Biol 2013 Sep 5;23(18):1787-93. Epub 2013 Sep 5.

Institute of Parasitology, Biology Centre, 37005 České Budějovice (Budweis), Czech Republic.

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http://dx.doi.org/10.1016/j.cub.2013.07.045DOI Listing
September 2013

Molecular phylogenetics of Hydatellaceae (Nymphaeales): sexual-system homoplasy and a new sectional classification.

Am J Bot 2012 Apr 2;99(4):663-76. Epub 2012 Apr 2.

UBC Botanical Garden & Centre for Plant Research, and Department of Botany, 6270 University Boulevard, University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.3732/ajb.1100524DOI Listing
April 2012

Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis.

Genome Biol Evol 2011 4;3:1296-303. Epub 2011 Oct 4.

Department of Evolutionary Biochemistry, A. N. Belozersky Institute of Physico-Chemical Biology, M. V. Lomonosov Moscow State University, Russia.

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http://dx.doi.org/10.1093/gbe/evr102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228488PMC
March 2012

Correlation between number and position of floral organs in Arabidopsis.

Ann Bot 2011 Jul;108(1):123-31

Department of Genetics, Biological Faculty, Moscow State University, Leninskiye gory, Moscow, 119992, Russia.

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http://dx.doi.org/10.1093/aob/mcr115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3119622PMC
July 2011

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).

BMC Genomics 2011 Jan 13;12:30. Epub 2011 Jan 13.

Department of Evolutionary Biochemistry, AN Belozersky Institute of Physico-Chemical Biology, MV Lomonosov Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1186/1471-2164-12-30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3027159PMC
January 2011

A comparison of nrDNA ITS and ETS loci for phylogenetic inference in the Umbelliferae: an example from tribe Tordylieae.

Mol Phylogenet Evol 2010 Oct 9;57(1):471-6. Epub 2010 Jun 9.

Department of Evolutionary Biochemistry, AN Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1016/j.ympev.2010.06.001DOI Listing
October 2010

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat.

BMC Plant Biol 2008 May 20;8:59. Epub 2008 May 20.

Faculty of Bioengineering and Bioinformatics, M,V, Lomonosov Moscow State University, Moscow, Russia.

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http://dx.doi.org/10.1186/1471-2229-8-59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2430205PMC
May 2008