Marcus C Chibucos

Marcus C Chibucos

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Marcus C Chibucos

Marcus C Chibucos

Publications by authors named "Marcus C Chibucos"

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31Publications

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Phenotype annotation with the ontology of microbial phenotypes (OMP).

J Biomed Semantics 2019 07 15;10(1):13. Epub 2019 Jul 15.

Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA.

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http://dx.doi.org/10.1186/s13326-019-0205-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6631659PMC
July 2019

The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.

Methods Mol Biol 2017 ;1446:245-259

Department of Medicine, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://dx.doi.org/10.1007/978-1-4939-3743-1_18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6377151PMC
December 2017

Vaginal Candida spp. genomes from women with vulvovaginal candidiasis.

Pathog Dis 2017 08;75(6)

Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201 USA.

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http://dx.doi.org/10.1093/femspd/ftx061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827580PMC
August 2017

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.

Database (Oxford) 2016 25;2016. Epub 2016 Apr 25.

Department of Biological Sciences, University of Maryland Baltimore County (UMBC), 1000 Hilltop Circle, Baltimore, MD, 21250, USA

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http://dx.doi.org/10.1093/database/baw055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4843526PMC
January 2017

Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.

Pathog Dis 2016 10 12;74(7). Epub 2016 Aug 12.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA

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http://dx.doi.org/10.1093/femspd/ftw080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407061PMC
October 2016

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.

Database (Oxford) 2015 9;2015:bav043. Epub 2015 May 9.

Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, Department of Microbiology and Immunology and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore MD, USA, SIB Swiss Institute of Bioinformatics, 1 Rue Michel Servet, 1211 Geneva, Switzerland, Department of Medicine and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore MD, USA, Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158, USA, School of Information, University of South Florida, Tampa, FL, 33647, USA, Genomics Division, Lawrence Berkeley National Lab, 1 Cyclotron Rd., Berkeley, 94720 CA USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland, ETH Zurich, Department of Computer Science, Universitätstr. 19, 8092 Zürich, Switzerland, SIB Swiss Institute of Bioinformatics, Universitätstr. 6, 8092 Zürich, Switzerland and University College London, Gower St, London WC1E 6BT, UK Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, Department of Microbiology and Immunology and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore MD, USA, SIB Swiss Institute of Bioinformatics, 1 Rue Michel Servet, 1211 Geneva, Switzerland, Department of Medicine and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore MD, USA, Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158, USA, School of Information, University of South Florida, Tampa, FL, 33647, USA, Genomics Division, Lawrence Berkeley Nat

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http://dx.doi.org/10.1093/database/bav043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425939PMC
December 2015

The genome sequence of four isolates from the family Lichtheimiaceae.

Pathog Dis 2015 Jul 9;73(5). Epub 2015 Apr 9.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA

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http://dx.doi.org/10.1093/femspd/ftv024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4467520PMC
July 2015

Standardized description of scientific evidence using the Evidence Ontology (ECO).

Database (Oxford) 2014 22;2014. Epub 2014 Jul 22.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Saccharomyces Genome Database, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK, Department of Epidemiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USAInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Saccharomyces Genome Database, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK, Department of Epidemiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1093/database/bau075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105709PMC
February 2015

An ontology for microbial phenotypes.

BMC Microbiol 2014 Nov 30;14:294. Epub 2014 Nov 30.

Institute for Genome Sciences and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://link.springer.com/content/pdf/10.1186%2Fs12866-014-02
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http://www.biomedcentral.com/1471-2180/14/294
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http://dx.doi.org/10.1186/s12866-014-0294-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287307PMC
November 2014

Kinetic and phylogenetic analysis of plant polyamine uptake transporters.

Planta 2012 Oct 19;236(4):1261-73. Epub 2012 Jun 19.

Department of Biological Sciences, Bowling Green State University, Bowling Green, OH 43403, USA.

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http://dx.doi.org/10.1007/s00425-012-1668-0DOI Listing
October 2012

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Authors:
Brian J Haas Sophien Kamoun Michael C Zody Rays H Y Jiang Robert E Handsaker Liliana M Cano Manfred Grabherr Chinnappa D Kodira Sylvain Raffaele Trudy Torto-Alalibo Tolga O Bozkurt Audrey M V Ah-Fong Lucia Alvarado Vicky L Anderson Miles R Armstrong Anna Avrova Laura Baxter Jim Beynon Petra C Boevink Stephanie R Bollmann Jorunn I B Bos Vincent Bulone Guohong Cai Cahid Cakir James C Carrington Megan Chawner Lucio Conti Stefano Costanzo Richard Ewan Noah Fahlgren Michael A Fischbach Johanna Fugelstad Eleanor M Gilroy Sante Gnerre Pamela J Green Laura J Grenville-Briggs John Griffith Niklaus J Grünwald Karolyn Horn Neil R Horner Chia-Hui Hu Edgar Huitema Dong-Hoon Jeong Alexandra M E Jones Jonathan D G Jones Richard W Jones Elinor K Karlsson Sridhara G Kunjeti Kurt Lamour Zhenyu Liu Lijun Ma Daniel Maclean Marcus C Chibucos Hayes McDonald Jessica McWalters Harold J G Meijer William Morgan Paul F Morris Carol A Munro Keith O'Neill Manuel Ospina-Giraldo Andrés Pinzón Leighton Pritchard Bernard Ramsahoye Qinghu Ren Silvia Restrepo Sourav Roy Ari Sadanandom Alon Savidor Sebastian Schornack David C Schwartz Ulrike D Schumann Ben Schwessinger Lauren Seyer Ted Sharpe Cristina Silvar Jing Song David J Studholme Sean Sykes Marco Thines Peter J I van de Vondervoort Vipaporn Phuntumart Stephan Wawra Rob Weide Joe Win Carolyn Young Shiguo Zhou William Fry Blake C Meyers Pieter van West Jean Ristaino Francine Govers Paul R J Birch Stephen C Whisson Howard S Judelson Chad Nusbaum

Nature 2009 Sep 9;461(7262):393-8. Epub 2009 Sep 9.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02141, USA.

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http://dx.doi.org/10.1038/nature08358DOI Listing
September 2009

Describing commonalities in microbial effector delivery using the Gene Ontology.

Trends Microbiol 2009 Jul 1;17(7):312-9. Epub 2009 Jul 1.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1016/j.tim.2009.05.001DOI Listing
July 2009

Programmed cell death in host-symbiont associations, viewed through the Gene Ontology.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S5. Epub 2009 Feb 19.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654665PMC
February 2009

Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S6. Epub 2009 Feb 19.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654666PMC
February 2009

Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S7. Epub 2009 Feb 19.

Center for Integrated Fungal Research, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654667PMC
February 2009

Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection.

Mol Plant Microbe Interact 2007 Jul;20(7):781-93

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1094/MPMI-20-7-0781DOI Listing
July 2007