Marco V José

Marco V José

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Marco V José

Marco V José

Publications by authors named "Marco V José"

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The evolution of proteome: From the primeval to the very dawn of LUCA.

Biosystems 2019 Jul 14;181:1-10. Epub 2019 Apr 14.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Ciudad de México CDMX, C.P. 04510, Mexico. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03032647193008
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http://dx.doi.org/10.1016/j.biosystems.2019.04.007DOI Listing
July 2019

A neutral evolution test derived from a theoretical amino acid substitution model.

J Theor Biol 2019 Apr 31;467:31-38. Epub 2019 Jan 31.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, CDMX, C.P, Ciudad de México 04510, Mexico. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2019.01.027DOI Listing
April 2019

Structural evolution of Glycyl-tRNA synthetases alpha subunit and its implication in the initial organization of the decoding system.

Prog Biophys Mol Biol 2019 03 22;142:43-50. Epub 2018 Aug 22.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Ciudad de México CDMX, C.P. 04510, Mexico. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00796107183012
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http://dx.doi.org/10.1016/j.pbiomolbio.2018.08.007DOI Listing
March 2019

How to eliminate taeniasis/cysticercosis: porcine vaccination and human chemotherapy (Part 2).

Theor Biol Med Model 2019 02 26;16(1). Epub 2019 Feb 26.

Theoretical Biology Group, Biomedical Research Institute, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510, CDMX, Mexico.

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https://tbiomed.biomedcentral.com/articles/10.1186/s12976-01
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http://dx.doi.org/10.1186/s12976-019-0100-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6390339PMC
February 2019

Mathematical model of the life cycle of taenia-cysticercosis: transmission dynamics and chemotherapy (Part 1).

Theor Biol Med Model 2018 11 19;15(1):18. Epub 2018 Nov 19.

Department of Immunology, Biomedical Research Institute, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510, CDMX, Mexico.

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http://dx.doi.org/10.1186/s12976-018-0090-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6241031PMC
November 2018

A Proposal of the Ur-proteome.

Orig Life Evol Biosph 2018 Jun 10;48(2):245-258. Epub 2017 Nov 10.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, C.P. 04510, Ciudad de México CDMX, Mexico.

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http://dx.doi.org/10.1007/s11084-017-9553-2DOI Listing
June 2018

Identity Elements of tRNA as Derived from Information Analysis.

Orig Life Evol Biosph 2018 Mar 28;48(1):73-81. Epub 2017 Jun 28.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, CDMX, C.P, 04510, Ciudad de México, Mexico.

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http://dx.doi.org/10.1007/s11084-017-9541-6DOI Listing
March 2018

Phenotypic Graphs and Evolution Unfold the Standard Genetic Code as the Optimal.

Orig Life Evol Biosph 2018 Mar 29;48(1):83-91. Epub 2017 Oct 29.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, C.P. 04510, Ciudad de México CDMX, Mexico.

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http://dx.doi.org/10.1007/s11084-017-9552-3DOI Listing
March 2018

Effects of Orthostatism and Hemodialysis on Mean Heart Period and Fractal Heart Rate Properties of Chronic Renal Failure Patients.

Artif Organs 2017 Nov 26;41(11):1026-1034. Epub 2017 May 26.

Departamento de Instrumentación Electromecánica, Instituto Nacional de Cardiología Ignacio Chávez, Tlalpan.

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http://dx.doi.org/10.1111/aor.12887DOI Listing
November 2017

Origin and Evolution of RNA-Dependent RNA Polymerase.

Front Genet 2017 20;8:125. Epub 2017 Sep 20.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de MéxicoMexico City, Mexico.

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http://dx.doi.org/10.3389/fgene.2017.00125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5611760PMC
September 2017

Peptidyl Transferase Center and the Emergence of the Translation System.

Life (Basel) 2017 Apr 25;7(2). Epub 2017 Apr 25.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510 CDMX, Mexico.

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http://dx.doi.org/10.3390/life7020021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5492143PMC
April 2017

A unified model of the standard genetic code.

R Soc Open Sci 2017 Mar 1;4(3):160908. Epub 2017 Mar 1.

Facultad de Matemática, Física y Computación , Universidad Central 'Marta Abreu' de Las Villas , Santa Clara , Cuba.

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http://dx.doi.org/10.1098/rsos.160908DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5383835PMC
March 2017

On the Uniqueness of the Standard Genetic Code.

Life (Basel) 2017 Feb 13;7(1). Epub 2017 Feb 13.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México D.F. 04510, Mexico.

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http://dx.doi.org/10.3390/life7010007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5370407PMC
February 2017

Genomic signatures in viral sequences by in-frame and out-frame mutual information.

J Theor Biol 2016 08 10;403:1-9. Epub 2016 May 10.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México D.F. 04510, Mexico. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2016.05.014DOI Listing
August 2016

tRNA Core Hypothesis for the Transition from the RNA World to the Ribonucleoprotein World.

Life (Basel) 2016 Mar 23;6(2). Epub 2016 Mar 23.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México 04510, Mexico.

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http://dx.doi.org/10.3390/life6020015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931452PMC
March 2016

Symmetrical and Thermodynamic Properties of Phenotypic Graphs of Amino Acids Encoded by the Primeval RNY Code.

Orig Life Evol Biosph 2015 Jun 22;45(1-2):77-83. Epub 2015 Mar 22.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México, D.F., 04510, Mexico,

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http://dx.doi.org/10.1007/s11084-015-9427-4DOI Listing
June 2015

Preserved autonomic heart rate modulation in chronic renal failure patients in response to hemodialysis and orthostatism.

Clin Exp Nephrol 2015 Apr 30;19(2):309-18. Epub 2014 May 30.

Departamento de Instrumentación Electromecánica, Instituto Nacional de Cardiología Ignacio Chávez, C. Juan Badiano No. 1 Col. Sección XVI. Tlalpan, CP 14080, Mexico, D.F., Mexico.

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http://dx.doi.org/10.1007/s10157-014-0990-1DOI Listing
April 2015

Evolution of transfer RNA and the origin of the translation system.

Front Genet 2014 28;5:303. Epub 2014 Aug 28.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México México, México.

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http://dx.doi.org/10.3389/fgene.2014.00303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147829PMC
September 2014

Three-Dimensional Algebraic Models of the tRNA Code and 12 Graphs for Representing the Amino Acids.

Life (Basel) 2014 Aug 11;4(3):341-73. Epub 2014 Aug 11.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México D.F. 04510, Mexico.

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http://dx.doi.org/10.3390/life4030341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4206851PMC
August 2014

Origin and evolution of the Peptidyl Transferase Center from proto-tRNAs.

FEBS Open Bio 2014 8;4:175-8. Epub 2014 Feb 8.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, CP 04510, DF, Mexico ; Centro Internacional de Ciencias, Cuernavaca, Morelos, Mexico.

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http://dx.doi.org/10.1016/j.fob.2014.01.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3953717PMC
March 2014

Periodic distribution of a putative nucleosome positioning motif in human, nonhuman primates, and archaea: mutual information analysis.

Int J Genomics 2013 10;2013:963956. Epub 2013 Jun 10.

Facultad de Ciencias, Universidad Nacional Autónoma de México, 04510 CP, DF, Mexico ; Centro de Ciencias de la Complejidad, Universidad Nacional Autónoma de México, 04510 CP, DF, Mexico.

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http://dx.doi.org/10.1155/2013/963956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3691935PMC
July 2013

Nonlinear dynamics of heart rate variability in response to orthostatism and hemodialysis in chronic renal failure patients: recurrence analysis approach.

Med Eng Phys 2013 Feb 28;35(2):178-87. Epub 2012 May 28.

Laboratorio de Biofísica de Sistemas Excitables, Facultad de Ciencias, Universidad Nacional Autónoma de México, Mexico.

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http://dx.doi.org/10.1016/j.medengphy.2012.04.013DOI Listing
February 2013

Human repetitive sequence densities are mostly negatively correlated with R/Y-based nucleosome-positioning motifs and positively correlated with W/S-based motifs.

Genomics 2013 Feb 5;101(2):125-33. Epub 2012 Nov 5.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apdo Postal 70228, México 04510 DF, Mexico.

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http://dx.doi.org/10.1016/j.ygeno.2012.10.005DOI Listing
February 2013

Genetic hotels for the standard genetic code: evolutionary analysis based upon novel three-dimensional algebraic models.

Bull Math Biol 2011 Jul 20;73(7):1443-76. Epub 2010 Aug 20.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Mexico.

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http://dx.doi.org/10.1007/s11538-010-9571-yDOI Listing
July 2011

On the evolution of the standard genetic code: vestiges of critical scale invariance from the RNA world in current prokaryote genomes.

PLoS One 2009 2;4(2):e4340. Epub 2009 Feb 2.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México DF, México.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004340PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631149PMC
April 2009

An extended RNA code and its relationship to the standard genetic code: an algebraic and geometrical approach.

Bull Math Biol 2007 Jan 2;69(1):215-43. Epub 2006 Nov 2.

Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México D.F. 04510, México.

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http://dx.doi.org/10.1007/s11538-006-9119-3DOI Listing
January 2007

HIV-1 dynamics at different time scales under antiretroviral therapy.

J Theor Biol 2006 Jan 11;238(1):220-9. Epub 2005 Jul 11.

Research Department, La Salle University, Benjamin Franklin 47, Col. Hipódromo-Condesa, México, D.F. 06140, México.

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http://dx.doi.org/10.1016/j.jtbi.2005.05.023DOI Listing
January 2006

Three-base periodicity patterns and self-similarity in whole bacterial chromosomes.

Biochem Biophys Res Commun 2004 Dec;325(2):467-78

Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apartado Postal 70228, CP 04510, México D.F., Mexico.

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http://dx.doi.org/10.1016/j.bbrc.2004.10.053DOI Listing
December 2004

A mathematical analysis for the cardiovascular control adaptations in chronic renal failure.

Artif Organs 2004 Apr;28(4):398-409

Grupo de Biología Teórica, Instituto de Investigaciones Biomédicas, Mexico, D.F., Mexico.

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http://dx.doi.org/10.1111/j.1525-1594.2004.47162.xDOI Listing
April 2004

Scaling properties and symmetrical patterns in the epidemiology of rotavirus infection.

Philos Trans R Soc Lond B Biol Sci 2003 Oct;358(1438):1625-41

Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apartado Postal 70228, Ciudad Universitaria, CP 04510 México DF Mexico.

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http://dx.doi.org/10.1098/rstb.2003.1291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693266PMC
October 2003

Poincaré plot indexes of heart rate variability capture dynamic adaptations after haemodialysis in chronic renal failure patients.

Clin Physiol Funct Imaging 2003 Mar;23(2):72-80

Grupo de Biología Teórica, Instituto de Investigaciones Biomédicas, UNAM, Ciudad Universitaria, México, D.F.

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March 2003

Positive cooperativity induces multimodal site and thermodynamic affinity distributions in multivalent proteins.

Anal Biochem 2003 Feb;313(2):226-33

Grupo de Biología Teórica, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Apartado Postal 70228, Ciudad Universitaria, 04510 México D.F., Mexico.

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http://dx.doi.org/10.1016/s0003-2697(02)00530-4DOI Listing
February 2003