Publications by authors named "Marco Mangone"

18Publications

Transcriptome changes during the initiation and progression of Duchenne muscular dystrophy in Caenorhabditis elegans.

Authors:
Heather C Hrach Shannon O'Brien Hannah S Steber Jason Newbern Alan Rawls Marco Mangone

Hum Mol Genet 2020 Jun;29(10):1607-1623

Virginia G. Piper Center for Personalized Diagnostics, The Biodesign Institute at Arizona State University, 1001 S McAllister Ave, Tempe, AZ 85281, USA.

View Article and Find Full Text PDF
June 2020

The 3' UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3'-UTR biology, and miRNA targeting.

Authors:
Hannah S Steber Christina Gallante Shannon O'Brien Po-Lin Chiu Marco Mangone

Genome Res 2019 12 19;29(12):2104-2116. Epub 2019 Nov 19.

Molecular and Cellular Biology Graduate Program, School of Life Sciences, Tempe, Arizona 85287.

View Article and Find Full Text PDF
December 2019

miRNA Profiling for Early Detection and Treatment of Duchenne Muscular Dystrophy.

Authors:
Heather C Hrach Marco Mangone

Int J Mol Sci 2019 Sep 19;20(18). Epub 2019 Sep 19.

Virginia G. Piper Center for Personalized Diagnostics, The Biodesign Institute at Arizona State University, 1001 S McAllister Ave, Tempe, AZ 85287, USA.

View Article and Find Full Text PDF
September 2019

ALG-1 Influences Accurate mRNA Splicing Patterns in the Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities.

Authors:
Kasuen Kotagama Anna L Schorr Hannah S Steber Marco Mangone

Genetics 2019 07 9;212(3):931-951. Epub 2019 May 9.

Molecular and Cellular Biology Graduate Program, School of Life Sciences, Arizona State University, Tempe, Arizona 85287

View Article and Find Full Text PDF
July 2019

Alternative Polyadenylation Directs Tissue-Specific miRNA Targeting in Somatic Tissues.

Authors:
Stephen M Blazie Heather C Geissel Henry Wilky Rajan Joshi Jason Newbern Marco Mangone

Genetics 2017 06 27;206(2):757-774. Epub 2017 Mar 27.

Molecular and Cellular Biology Graduate Program, Arizona State University, Tempe, Arizona 85281

View Article and Find Full Text PDF
June 2017

Evolutionary patterns of metazoan microRNAs reveal targeting principles in the let-7 and miR-10 families.

Authors:
Justin M Wolter Hoai Huang Thi Le Alexander Linse Victoria A Godlove Thuy-Duyen Nguyen Kasuen Kotagama Alissa Lynch Alan Rawls Marco Mangone

Genome Res 2017 01 7;27(1):53-63. Epub 2016 Dec 7.

Virginia G. Piper Center For Personalized Diagnostics, The Biodesign Institute at Arizona State University, Tempe, Arizona 85287, USA.

View Article and Find Full Text PDF
January 2017

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis.

Authors:
Elizabeth D Hutchins Walter L Eckalbar Justin M Wolter Marco Mangone Kenro Kusumi

BMC Genomics 2016 05 5;17:339. Epub 2016 May 5.

School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA.

View Article and Find Full Text PDF
May 2016

Potential Diagnostic and Prognostic Biomarkers of Epigenetic Drift within the Cardiovascular Compartment.

Authors:
Robert G Wallace Laura C Twomey Marc-Antoine Custaud Niall Moyna Philip M Cummins Marco Mangone Ronan P Murphy

Biomed Res Int 2016 28;2016:2465763. Epub 2016 Jan 28.

School of Health & Human Performance, Dublin City University, Ireland.

View Article and Find Full Text PDF
November 2016

A human 3'UTR clone collection to study post-transcriptional gene regulation.

Authors:
Kasuen Kotagama Cody S Babb Justin M Wolter Ronan P Murphy Marco Mangone

BMC Genomics 2015 Dec 9;16:1036. Epub 2015 Dec 9.

Molecular and Cellular Biology Graduate Program, Arizona State University, Tempe, AZ, USA.

View Article and Find Full Text PDF
December 2015

miRNAs as Biomarkers in Chronic Myelogenous Leukemia.

Authors:
Kasuen Kotagama Yung Chang Marco Mangone

Drug Dev Res 2015 Sep 18;76(6):278-85. Epub 2015 Aug 18.

Molecular and Cellular Biology Graduate Program, Arizona State University, Tempe, AZ, USA.

View Article and Find Full Text PDF
September 2015

Detection of miRNA Targets in High-throughput Using the 3'LIFE Assay.

Authors:
Justin M Wolter Kasuen Kotagama Cody S Babb Marco Mangone

J Vis Exp 2015 May 25(99):e52647. Epub 2015 May 25.

School of Life Sciences, Arizona State University; Biodesign Institute, Arizona State University;

View Article and Find Full Text PDF
May 2015

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles.

Authors:
Stephen M Blazie Cody Babb Henry Wilky Alan Rawls Jin G Park Marco Mangone

BMC Biol 2015 Jan 20;13. Epub 2015 Jan 20.

Molecular and Cellular Biology Graduate Program, Arizona State University, Tempe, AZ, USA.

View Article and Find Full Text PDF
January 2015

3'LIFE: a functional assay to detect miRNA targets in high-throughput.

Authors:
Justin M Wolter Kasuen Kotagama Alexandra C Pierre-Bez Mari Firago Marco Mangone

Nucleic Acids Res 2014 29;42(17):e132. Epub 2014 Jul 29.

School of Life Sciences, Arizona State University, 427 E Tyler Mall, Tempe, AZ 85287, USA Virginia G. Piper Center for Personalized Diagnostics, Biodesign Institute, Arizona State University, 1001 S. McAllister Dr., Tempe, AZ 85287, USA Barrett, The Honors College, Arizona State University, 751 E Lemon Mall, Tempe, AZ 85287, USA

View Article and Find Full Text PDF
February 2015

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

View Article and Find Full Text PDF
December 2010

The landscape of C. elegans 3'UTRs.

Authors:
Marco Mangone Arun Prasad Manoharan Danielle Thierry-Mieg Jean Thierry-Mieg Ting Han Sebastian D Mackowiak Emily Mis Charles Zegar Michelle R Gutwein Vishal Khivansara Oliver Attie Kevin Chen Kourosh Salehi-Ashtiani Marc Vidal Timothy T Harkins Pascal Bouffard Yutaka Suzuki Sumio Sugano Yuji Kohara Nikolaus Rajewsky Fabio Piano Kristin C Gunsalus John K Kim

Science 2010 Jul 3;329(5990):432-5. Epub 2010 Jun 3.

Center for Genomics and Systems Biology, Department of Biology, New York University, 1009 Silver Center, New York, NY 10003, USA.

View Article and Find Full Text PDF
July 2010

Role of the HCF-1 basic region in sustaining cell proliferation.

Authors:
Marco Mangone Michael P Myers Winship Herr

PLoS One 2010 Feb 2;5(2):e9020. Epub 2010 Feb 2.

Watson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America.

View Article and Find Full Text PDF
February 2010

UTRome.org: a platform for 3'UTR biology in C. elegans.

Authors:
Marco Mangone Philip Macmenamin Charles Zegar Fabio Piano Kristin C Gunsalus

Nucleic Acids Res 2008 Jan 5;36(Database issue):D57-62. Epub 2007 Nov 5.

Department of Biology and Center for Genomics and Systems Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.

View Article and Find Full Text PDF
January 2008

The generic genome browser: a building block for a model organism system database.

Authors:
Lincoln D Stein Christopher Mungall ShengQiang Shu Michael Caudy Marco Mangone Allen Day Elizabeth Nickerson Jason E Stajich Todd W Harris Adrian Arva Suzanna Lewis

Genome Res 2002 Oct;12(10):1599-610

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11790, USA.

View Article and Find Full Text PDF
October 2002