Marco Galardini

Marco Galardini

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Marco Galardini

Marco Galardini

Publications by authors named "Marco Galardini"

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The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae.

Mol Syst Biol 2019 Dec;15(12):e8831

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.15252/msb.20198831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6901017PMC
December 2019

pyseer: a comprehensive tool for microbial pangenome-wide association studies.

Bioinformatics 2018 12;34(24):4310-4312

Department of Parasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.

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http://dx.doi.org/10.1093/bioinformatics/bty539DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289128PMC
December 2018

A resource of variant effect predictions of single nucleotide variants in model organisms.

Mol Syst Biol 2018 12 20;14(12):e8430. Epub 2018 Dec 20.

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6301329PMC
http://dx.doi.org/10.15252/msb.20188430DOI Listing
December 2018

Phenotype inference in an strain panel.

Elife 2017 12 27;6. Epub 2017 Dec 27.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom.

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http://dx.doi.org/10.7554/eLife.31035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5745082PMC
December 2017

Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis.

Cell Syst 2017 03 8;4(3):291-305.e7. Epub 2017 Feb 8.

Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Cell and Tissue Biology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute of Quantitative Biology, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.12.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5400513PMC
March 2017

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.

Nucleic Acids Res 2016 Jan 19;44(D1):D620-3. Epub 2015 Nov 19.

Department of Computational Biology, Research and Innovation Center, Fondazione Edmund Mach, San Michele all'Adige, Trento (TN) 38010, Italy

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http://dx.doi.org/10.1093/nar/gkv1251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702885PMC
January 2016

MeDuSa: a multi-draft based scaffolder.

Bioinformatics 2015 Aug 25;31(15):2443-51. Epub 2015 Mar 25.

Department of Biology, ComBo, Florence Computational Biology Group, Department of Biology, LEMM, Laboratory of Microbial and Molecular Evolution Florence, University of Florence, I-50019 Sesto F.no, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btv171DOI Listing
August 2015

High-throughput phenomics.

Methods Mol Biol 2015 ;1231:99-123

Dipartimento di Scienze delle Produzioni Agroalimentari e dell'Ambiente (DISPAA), University of Florence, P.le delle Cascine, 24, Florence, 50144, Italy,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_7DOI Listing
June 2015

Mapping contigs using CONTIGuator.

Methods Mol Biol 2015 ;1231:163-76

Department of Biology, University of Florence, Florence, Italy,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_11DOI Listing
June 2015

From pangenome to panphenome and back.

Methods Mol Biol 2015 ;1231:257-70

EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_16DOI Listing
June 2015

Preface. Bacterial pangenomics.

Methods Mol Biol 2015 ;1231:v-vi

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http://dx.doi.org/10.1007/978-1-4939-1720-4DOI Listing
June 2015

Enly: Improving Draft Genomes through Reads Recycling.

J Genomics 2014 5;2:89-93. Epub 2014 Apr 5.

1. Dept. of Evolutionary Biology, Via Madonna del Piano 6, 50143 Sesto Fiorentino,Florence, Italy;

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http://dx.doi.org/10.7150/jgen.7298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091449PMC
July 2014

DuctApe: a suite for the analysis and correlation of genomic and OmniLog™ Phenotype Microarray data.

Genomics 2014 Jan 4;103(1):1-10. Epub 2013 Dec 4.

Consiglio per la Ricerca e la sperimentazione in Agricoltura, Centro di Ricerca per l'Agrobiologia e la Pedologia (CRA-ABP), Florence, Italy.

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http://dx.doi.org/10.1016/j.ygeno.2013.11.005DOI Listing
January 2014

Draft Genome Sequence of Chromate-Resistant and Biofilm-Producing Strain Pseudomonas alcaliphila 34.

Genome Announc 2013 Jan 21;1(1). Epub 2013 Feb 21.

Dipartimento di Biotecnologie Agrarie, Sezione di Microbiologia, Università degli Studi di Firenze, Florence, Italy.

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http://dx.doi.org/10.1128/genomeA.00125-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3587930PMC
January 2013

Plant-bacteria association and symbiosis: are there common genomic traits in alphaproteobacteria?

Genes (Basel) 2011 Nov 29;2(4):1017-32. Epub 2011 Nov 29.

Department of Evolutionary Biology, University of Florence, via Romana 17, 50125 Firenze, Italy.

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http://dx.doi.org/10.3390/genes2041017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927591PMC
November 2011

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes.

Source Code Biol Med 2011 Jun 21;6:11. Epub 2011 Jun 21.

Department of Evolutionary Biology, University of Firenze, via Romana 17, I-50125 Firenze, Italy.

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http://dx.doi.org/10.1186/1751-0473-6-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133546PMC
June 2011

Genomics of biological wastewater treatment.

Microb Biotechnol 2008 Sep;1(5):333-40

Kluyver Centre for Genomics of Industrial Fermentation, TI Food and Nutrition, 6700AN Wageningen, the Netherlands.

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http://dx.doi.org/10.1111/j.1751-7915.2008.00059.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3815239PMC
September 2008