Marco Fondi

Marco Fondi

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Marco Fondi

Marco Fondi

Publications by authors named "Marco Fondi"

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Diversity and Horizontal Transfer of Antarctic spp. Plasmids.

Genes (Basel) 2019 10 28;10(11). Epub 2019 Oct 28.

Department of Bacterial Genetics, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland.

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http://dx.doi.org/10.3390/genes10110850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6896180PMC
October 2019

Metabolic Modeling of SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic Bacteria.

Microorganisms 2019 Apr 5;7(4). Epub 2019 Apr 5.

Department of Biotechnology, Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 58 Abrahama Street, 80-307 Gdansk, Poland.

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http://dx.doi.org/10.3390/microorganisms7040101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6518042PMC
April 2019

The art of adapting to extreme environments: The model system Pseudoalteromonas.

Phys Life Rev 2019 Apr 4. Epub 2019 Apr 4.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, ViaMadonna del Piano 6, 50019 Sesto Fiorentino, FI, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.plrev.2019.04.003DOI Listing
April 2019

Multidisciplinary approaches for studying rhizobium-legume symbioses.

Can J Microbiol 2019 Jan 11;65(1):1-33. Epub 2018 Sep 11.

a Department of Biology, University of Florence, Sesto Fiorentino, FI 50019, Italy.

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http://dx.doi.org/10.1139/cjm-2018-0377DOI Listing
January 2019

Tn-Core: A Toolbox for Integrating Tn-seq Gene Essentiality Data and Constraint-Based Metabolic Modeling.

ACS Synth Biol 2019 01 27;8(1):158-169. Epub 2018 Dec 27.

Department of Biology , University of Florence , Sesto Fiorentino , Florence , 50019 , Italy.

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http://pubs.acs.org/doi/10.1021/acssynbio.8b00432
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http://dx.doi.org/10.1021/acssynbio.8b00432DOI Listing
January 2019

Template-Assisted Metabolic Reconstruction and Assembly of Hybrid Bacterial Models.

Methods Mol Biol 2018 ;1716:177-196

Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Florence, Italy.

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http://dx.doi.org/10.1007/978-1-4939-7528-0_8DOI Listing
July 2018

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti.

PLoS Genet 2018 04 19;14(4):e1007357. Epub 2018 Apr 19.

Department of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929573PMC
April 2018

G4PromFinder: an algorithm for predicting transcription promoters in GC-rich bacterial genomes based on AT-rich elements and G-quadruplex motifs.

BMC Bioinformatics 2018 02 6;19(1):36. Epub 2018 Feb 6.

Department of Biological and Environmental Sciences and Technologies, University of Salento, Lecce, Italy.

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http://dx.doi.org/10.1186/s12859-018-2049-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5801747PMC
February 2018

Modelling the Kinetic Response to Nutrient Fluctuations.

Authors:
Marco Fondi

Trends Microbiol 2018 01 24;26(1):4-5. Epub 2017 Nov 24.

Department of Biology, University of Florence, Italy. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0966842X173025
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http://dx.doi.org/10.1016/j.tim.2017.11.009DOI Listing
January 2018

Subfunctionalization influences the expansion of bacterial multidrug antibiotic resistance.

BMC Genomics 2017 Oct 30;18(1):834. Epub 2017 Oct 30.

Department of Biology, University of Florence, Via Madonna del Piano 6, 50019, Sesto Fiorentino, FI, Italy.

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http://dx.doi.org/10.1186/s12864-017-4222-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663151PMC
October 2017

Constraint-based metabolic modelling of marine microbes and communities.

Mar Genomics 2017 Aug 23;34:1-10. Epub 2017 Jun 23.

Dep. of Biology, University of Florence, Via Madonna del Piano 6, 50019, Sesto Fiorentino, Florence, Italy.

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http://dx.doi.org/10.1016/j.margen.2017.06.003DOI Listing
August 2017

Perspectives and Challenges in Microbial Communities Metabolic Modeling.

Front Genet 2017 21;8:88. Epub 2017 Jun 21.

Department of Biology, University of FlorenceFlorence, Italy.

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http://dx.doi.org/10.3389/fgene.2017.00088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5478693PMC
June 2017

Pseudoalteromonas haloplanktis produces methylamine, a volatile compound active against Burkholderia cepacia complex strains.

N Biotechnol 2017 Mar 29;35:13-18. Epub 2016 Oct 29.

Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario Monte Sant'Angelo, Via Cinthia, 80126 Napoli, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.nbt.2016.10.009DOI Listing
March 2017

The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights.

BMC Genomics 2017 01 17;18(1):93. Epub 2017 Jan 17.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, I-501019, Sesto F.no Florence, Italy.

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http://dx.doi.org/10.1186/s12864-016-3382-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240218PMC
January 2017

Modelling microbial metabolic rewiring during growth in a complex medium.

BMC Genomics 2016 11 24;17(1):970. Epub 2016 Nov 24.

Department of Biology, University of Florence, Via Madonna del Piano 6, I-50019, Sesto F.no, Italy.

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http://dx.doi.org/10.1186/s12864-016-3311-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5121958PMC
November 2016

Antagonistic interactions between endophytic cultivable bacterial communities isolated from the medicinal plant Echinacea purpurea.

Environ Microbiol 2016 09 22;18(8):2357-65. Epub 2015 Jul 22.

Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, Florence, I-50019, Italy.

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http://dx.doi.org/10.1111/1462-2920.12911DOI Listing
September 2016

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity.

Proc Natl Acad Sci U S A 2016 06 10;113(26):E3801-9. Epub 2016 Jun 10.

Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093-0412; Department of Pediatrics, University of California, San Diego, La Jolla, CA 92093-0760;

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http://dx.doi.org/10.1073/pnas.1523199113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932939PMC
June 2016

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis.

Genome Biol Evol 2016 05 13;8(5):1388-400. Epub 2016 May 13.

Department of Biology, National University of Ireland Maynooth, County Kildare, Ireland Computational Evolutionary Biology, Faculty of Life Sciences, The University of Manchester, United Kingdom

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http://dx.doi.org/10.1093/gbe/evw077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898794PMC
May 2016

A genomic and transcriptomic approach to investigate the blue pigment phenotype in Pseudomonas fluorescens.

Int J Food Microbiol 2015 Nov 1;213:88-98. Epub 2015 Jun 1.

Department of Comparative Biomedicine and Food Science, University of Padova, Viale dell'Università, 16 Legnaro, 35020 Padova, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.ijfoodmicro.2015.05.024DOI Listing
November 2015

Genomes analysis and bacteria identification: The use of overlapping genes as molecular markers.

J Microbiol Methods 2015 Oct 30;117:108-12. Epub 2015 Jul 30.

Department of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto F.no, Florence, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.mimet.2015.07.025DOI Listing
October 2015

Analysis of a Pool of Small Plasmids from Soil Heterotrophic Cultivable Bacterial Communities.

Open Microbiol J 2015 31;9:98-109. Epub 2015 Aug 31.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, I-50019 Sesto Fiorentino (Florence), Italy.

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http://benthamopen.com/contents/pdf/TOMICROJ/TOMICROJ-9-98.p
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http://benthamopen.com/ABSTRACT/TOMICROJ-9-98
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http://dx.doi.org/10.2174/1874285801509010098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4598422PMC
October 2015

MeDuSa: a multi-draft based scaffolder.

Bioinformatics 2015 Aug 25;31(15):2443-51. Epub 2015 Mar 25.

Department of Biology, ComBo, Florence Computational Biology Group, Department of Biology, LEMM, Laboratory of Microbial and Molecular Evolution Florence, University of Florence, I-50019 Sesto F.no, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btv171DOI Listing
August 2015

Efflux-mediated resistance to a benzothiadiazol derivative effective against Burkholderia cenocepacia.

Front Microbiol 2015 5;6:815. Epub 2015 Aug 5.

Laboratory of Molecular Microbiology, Dipartimento di Biologia e Biotecnologie "Lazzaro Spallanzani," Università degli Studi di Pavia Pavia, Italy.

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http://dx.doi.org/10.3389/fmicb.2015.00815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4525489PMC
August 2015

Methods for assembling reads and producing contigs.

Methods Mol Biol 2015 ;1231:151-61

Department of Biology, University of Florence, via Madonna del Piano 6, Sesto Fiorentino, Firenze, 50019, Italy,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_10DOI Listing
June 2015

Defining orthologs and pangenome size metrics.

Methods Mol Biol 2015 ;1231:191-202

Department of Biology, University of Florence, via Madonna del Piano 6, Sesto Fiorentino, Florence, 50019, Italy,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_13DOI Listing
June 2015

Genome-scale metabolic network reconstruction.

Methods Mol Biol 2015 ;1231:233-56

Department of Biology, University of Florence, via Madonna del Piano 6, I-50019 Sesto Fiorentino, Florence, Italy,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_15DOI Listing
June 2015

Preface. Bacterial pangenomics.

Methods Mol Biol 2015 ;1231:v-vi

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http://dx.doi.org/10.1007/978-1-4939-1720-4DOI Listing
June 2015

Genome-scale metabolic reconstruction and constraint-based modelling of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125.

Environ Microbiol 2015 Mar 30;17(3):751-66. Epub 2014 Jun 30.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, Florence, 50019, Italy; ComBo, Florence Computational Biology Group, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, Florence, 50019, Italy.

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http://dx.doi.org/10.1111/1462-2920.12513DOI Listing
March 2015

Multi -omics and metabolic modelling pipelines: challenges and tools for systems microbiology.

Microbiol Res 2015 Feb 7;171:52-64. Epub 2015 Jan 7.

University of Cambridge, Computer Laboratory, 15 JJ Thomson Avenue, CB3 0FD Cambridge, UK.

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http://dx.doi.org/10.1016/j.micres.2015.01.003DOI Listing
February 2015

Network Analysis of Plasmidomes: The Azospirillum brasilense Sp245 Case.

Int J Evol Biol 2014 29;2014:951035. Epub 2014 Dec 29.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy.

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http://downloads.hindawi.com/journals/ijeb/2014/951035.pdf
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http://www.hindawi.com/journals/ijeb/2014/951035/
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http://dx.doi.org/10.1155/2014/951035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4295147PMC
January 2015

Genomic analysis of three sponge-associated Arthrobacter Antarctic strains, inhibiting the growth of Burkholderia cepacia complex bacteria by synthesizing volatile organic compounds.

Microbiol Res 2014 Jul-Aug;169(7-8):593-601. Epub 2013 Oct 20.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.micres.2013.09.018DOI Listing
December 2014

Origin, duplication and reshuffling of plasmid genes: Insights from Burkholderia vietnamiensis G4 genome.

Genomics 2014 Feb-Mar;103(2-3):229-38. Epub 2014 Feb 24.

Laboratory of Microbial and Molecular Evolution, Department of Biology, Via Madonna del Piano 6, University of Florence, I-50019 Sesto F.no, Firenze, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2014.02.004DOI Listing
December 2014

Mechanism of resistance to an antitubercular 2-thiopyridine derivative that is also active against Burkholderia cenocepacia.

Antimicrob Agents Chemother 2014 6;58(4):2415-7. Epub 2014 Jan 6.

Dipartimento di Biologia e Biotecnologie L. Spallanzani, Università degli Studi di Pavia, Pavia, Italy.

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http://dx.doi.org/10.1128/AAC.02438-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023784PMC
November 2014

Antibiotic resistance differentiates Echinacea purpurea endophytic bacterial communities with respect to plant organs.

Res Microbiol 2014 Oct 2;165(8):686-94. Epub 2014 Oct 2.

Department of Biology, University of Florence, Via Madonna del Piano 6, I-50019, Sesto Fiorentino, Florence, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.resmic.2014.09.008DOI Listing
October 2014

Enly: Improving Draft Genomes through Reads Recycling.

J Genomics 2014 5;2:89-93. Epub 2014 Apr 5.

1. Dept. of Evolutionary Biology, Via Madonna del Piano 6, 50143 Sesto Fiorentino,Florence, Italy;

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http://dx.doi.org/10.7150/jgen.7298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091449PMC
July 2014

Linking Bacterial Endophytic Communities to Essential Oils: Clues from Lavandula angustifolia Mill.

Evid Based Complement Alternat Med 2014 26;2014:650905. Epub 2014 May 26.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.

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http://dx.doi.org/10.1155/2014/650905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4058287PMC
June 2014

Exploring the Anti-Burkholderia cepacia Complex Activity of Essential Oils: A Preliminary Analysis.

Evid Based Complement Alternat Med 2014 19;2014:573518. Epub 2014 Feb 19.

Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy ; Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.

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http://dx.doi.org/10.1155/2014/573518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3950482PMC
April 2014

Draft genomes of three Antarctic Psychrobacter strains producing antimicrobial compounds against Burkholderia cepacia complex, opportunistic human pathogens.

Mar Genomics 2014 Feb 5;13:37-8. Epub 2014 Jan 5.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy.

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http://dx.doi.org/10.1016/j.margen.2013.12.009DOI Listing
February 2014

Phenotypic and genomic characterization of the Antarctic bacterium Gillisia sp. CAL575, a producer of antimicrobial compounds.

Extremophiles 2014 Jan 23;18(1):35-49. Epub 2013 Oct 23.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019, Sesto Fiorentino (Florence), Italy.

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http://dx.doi.org/10.1007/s00792-013-0590-0DOI Listing
January 2014

Femoral nerve-artery relation in patients with proximal femur fractures.

J Clin Anesth 2013 Nov 30;25(7):600-2. Epub 2013 Aug 30.

Department of Anesthesiology, Centro Hospitalar Trás-Os-Montes e Alto Douro (CHTMAD), Vila Real 5000-508, Portugal.

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http://dx.doi.org/10.1016/j.jclinane.2012.12.008DOI Listing
November 2013

DprE1, a new taxonomic marker in mycobacteria.

FEMS Microbiol Lett 2013 Nov 12;348(1):66-73. Epub 2013 Sep 12.

Department of Biology and Biotechnology "Lazzaro Spallanzani", University of Pavia, Pavia, Italy.

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http://dx.doi.org/10.1111/1574-6968.12246DOI Listing
November 2013

Draft Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759.

Genome Announc 2013 Aug 22;1(4). Epub 2013 Aug 22.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Florence, Italy.

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http://dx.doi.org/10.1128/genomeA.00648-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751608PMC
August 2013

Evolution of lactic acid bacteria in the order Lactobacillales as depicted by analysis of glycolysis and pentose phosphate pathways.

Syst Appl Microbiol 2013 Jul 2;36(5):291-305. Epub 2013 Jun 2.

Food Microbiology Laboratory, Department of Biotechnology, University of Verona, Strada Le Grazie 15, I-37134 Verona, Italy.

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http://dx.doi.org/10.1016/j.syapm.2013.03.009DOI Listing
July 2013

A census of RND superfamily proteins in the Burkholderia genus.

Future Microbiol 2013 Jul;8(7):923-37

Laboratory of Molecular & Microbial Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino (Fi), Italy.

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http://dx.doi.org/10.2217/fmb.13.50DOI Listing
July 2013

The genome sequence of the hydrocarbon-degrading Acinetobacter venetianus VE-C3.

Res Microbiol 2013 Jun 23;164(5):439-49. Epub 2013 Mar 23.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino (FI), Italy.

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http://dx.doi.org/10.1016/j.resmic.2013.03.003DOI Listing
June 2013

Draft genome sequence of the hydrocarbon-degrading and emulsan-producing strain Acinetobacter venetianus RAG-1T.

J Bacteriol 2012 Sep;194(17):4771-2

Laboratory of Microbial and Molecular Evolution, Department of Evolutionary Biology, University of Florence, Florence, Italy.

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http://dx.doi.org/10.1128/JB.01019-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3415512PMC
September 2012

Large-scale analysis of plasmid relationships through gene-sharing networks.

Mol Biol Evol 2012 Apr 29;29(4):1225-40. Epub 2011 Nov 29.

Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1093/molbev/msr292DOI Listing
April 2012

Molecular and phenotypic characterization of Acinetobacter strains able to degrade diesel fuel.

Res Microbiol 2012 Apr 16;163(3):161-72. Epub 2011 Dec 16.

Laboratory of Microbial and Molecular Evolution, Department of Evolutionary Biology, University of Florence, Via Romana 17-19, 50125 Florence, Italy.

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http://dx.doi.org/10.1016/j.resmic.2011.12.002DOI Listing
April 2012

The mosaicism of plasmids revealed by atypical genes detection and analysis.

BMC Genomics 2011 Aug 8;12:403. Epub 2011 Aug 8.

Lab, of Microbial and Molecular Evolution, Dept, of Evolutionary Biology, University of Florence, Italy.

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http://dx.doi.org/10.1186/1471-2164-12-403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166947PMC
August 2011

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks.

Environ Microbiol 2010 Dec;12(12):3228-42

Lab. of Microbial and Molecular Evolution, Dept. of Evolutionary Biology, Via Romana 17-19, University of Florence, Florence, Italy.

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http://dx.doi.org/10.1111/j.1462-2920.2010.02295.xDOI Listing
December 2010

Identification of species of the Burkholderia cepacia complex by sequence analysis of the hisA gene.

J Med Microbiol 2010 Oct 22;59(Pt 10):1163-70. Epub 2010 Jul 22.

Laboratory of Microbial and Molecular Evolution, Department of Evolutionary Biology, University of Florence, Via Romana 17-19, I-50125 Firenze, Italy.

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http://dx.doi.org/10.1099/jmm.0.019844-0DOI Listing
October 2010

Exploring the HME and HAE1 efflux systems in the genus Burkholderia.

BMC Evol Biol 2010 Jun 3;10:164. Epub 2010 Jun 3.

Lab. of Molecular and Microbial Evolution, Dep. of Evolutionary Biology, University of Florence, 50125 Firenze, Italy.

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http://dx.doi.org/10.1186/1471-2148-10-164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2891726PMC
June 2010

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis.

BMC Syst Biol 2010 Apr 28;4:52. Epub 2010 Apr 28.

Department of Evolutionary Biology, University of Florence, via Romana, 17, Florence, Italy.

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http://dx.doi.org/10.1186/1752-0509-4-52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877005PMC
April 2010

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome.

BMC Evol Biol 2010 Feb 24;10:59. Epub 2010 Feb 24.

Laboratory of Microbial and Molecular Evolution, Dept, of Evolutionary Biology, Via Romana 17-19, University of Florence, I-50125 Florence, Italy.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-10-59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848654PMC
February 2010

Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia.

Gene 2009 Dec 13;448(1):16-28. Epub 2009 Aug 13.

Department of Evolutionary Biology, University of Florence, 50125 Florence, Italy.

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http://dx.doi.org/10.1016/j.gene.2009.08.002DOI Listing
December 2009

The evolution of histidine biosynthesis in archaea: insights into the his genes structure and organization in LUCA.

J Mol Evol 2009 Nov 3;69(5):512-26. Epub 2009 Nov 3.

Department of Evolutionary Biology, University of Florence, Via Romana 17-19, 50125, Florence, Italy.

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http://link.springer.com/10.1007/s00239-009-9286-6
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http://dx.doi.org/10.1007/s00239-009-9286-6DOI Listing
November 2009

Origin and evolution of operons and metabolic pathways.

Res Microbiol 2009 Sep 22;160(7):502-12. Epub 2009 May 22.

Laboratory of Microbial and Molecular Evolution, Department of Evolutionary Biology, Via Romana 17-19, University of Florence, 50125 Florence, Italy.

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http://linkinghub.elsevier.com/retrieve/pii/S092325080900053
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http://dx.doi.org/10.1016/j.resmic.2009.05.001DOI Listing
September 2009

Origin and evolution of metabolic pathways.

Phys Life Rev 2009 Mar 8;6(1):23-52. Epub 2009 Jan 8.

Laboratory of Microbial and Molecular Evolution, Department of Evolutionary Biology, Via Romana 17-19, University of Florence, Italy.

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http://linkinghub.elsevier.com/retrieve/pii/S157106450900002
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http://dx.doi.org/10.1016/j.plrev.2008.12.003DOI Listing
March 2009

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land.

Biol Direct 2009 Feb 16;4. Epub 2009 Feb 16.

Department of Environmental and Forestry Sciences and Technologies, University of Florence, via S. Bonaventura, 13, 50145, Florence, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657906PMC
February 2009

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network.

BMC Bioinformatics 2008 Dec 21;9:551. Epub 2008 Dec 21.

Department of Evolutionary Biology, University of Florence, via Romana 17, I-50125 Florence, Italy.

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December 2008

The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis.

BMC Evol Biol 2007 Aug 16;7 Suppl 2:S3. Epub 2007 Aug 16.

Dipartimento di Biologia Animale e Genetica, Università di Firenze, Via Romana 17\19, Firenze, Italia.

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August 2007

The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case.

BMC Evol Biol 2007 Aug 16;7 Suppl 2:S4. Epub 2007 Aug 16.

Dept. of Animal Biology and Genetics, via Romana 17, 50125 Florence, Italy.

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August 2007

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes.

BMC Bioinformatics 2007 Mar 8;8 Suppl 1:S12. Epub 2007 Mar 8.

Dipartimento di Biologia Animale e Genetica, Università di Firenze, Via Romana 17\19, Firenze, Italy.

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March 2007