Marcin von Grotthuss

Marcin von Grotthuss

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Marcin von Grotthuss

Marcin von Grotthuss

Publications by authors named "Marcin von Grotthuss"

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Cerebrovascular Disease Knowledge Portal: An Open-Access Data Resource to Accelerate Genomic Discoveries in Stroke.

Stroke 2018 02 15;49(2):470-475. Epub 2018 Jan 15.

From the Center for Genomic Medicine (K.C., C.G.-F., C.K., S.M., N.V., J.R.), Division of Neurocritical Care and Emergency Neurology, Department of Neurology (J.R.), and J. Philip Kistler Stroke Research Center (J.R.), Massachusetts General Hospital, Boston; Program in Medical and Population Genetics, Broad Institute, Cambridge, MA (K.C., C.G.-F., C.K., S.M., J.F., N.B., M.v.G., B.A., M.C., N.V., J.R., G.J.F.); Division of Neurocritical Care and Emergency Neurology, Department of Neurology, Yale University School of Medicine, New Haven, CT (L.M., G.J.F.); Institute for Stroke and Dementia Research, Klinikum der Universität München, Ludwig-Maximilian University, Munich, Germany (R.M.); Institute for Precision Cardiovascular Medicine, American Heart Association National Center, Dallas, TX (J.L.H.); Department of Medicine, Lillehei Heart Institute, University of Minnesota, Minneapolis (J.L.H.); and McMaster University, Hamilton, Ontario, Canada (M.C.).

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http://dx.doi.org/10.1161/STROKEAHA.117.018922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5780219PMC
February 2018

Structural Basis of Neurohormone Perception by the Receptor Tyrosine Kinase Torso.

Mol Cell 2015 Dec 19;60(6):941-52. Epub 2015 Nov 19.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA; Division of Molecular Medicine, Children's Hospital, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2015.10.026DOI Listing
December 2015

Remodelling of a homeobox gene cluster by multiple independent gene reunions in Drosophila.

Nat Commun 2015 Mar 5;6:6509. Epub 2015 Mar 5.

Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California 92697, USA.

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http://dx.doi.org/10.1038/ncomms7509DOI Listing
March 2015

Functional divergence of the miRNA transcriptome at the onset of Drosophila metamorphosis.

Mol Biol Evol 2014 Oct 19;31(10):2557-72. Epub 2014 Jun 19.

Department of Ecology and Evolutionary Biology, University of California, Irvine

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http://dx.doi.org/10.1093/molbev/msu195DOI Listing
October 2014

HarmonyDOCK: the structural analysis of poses in protein-ligand docking.

J Comput Biol 2014 Mar 20;21(3):247-56. Epub 2010 Nov 20.

1 Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw , Warsaw, Poland .

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http://www.liebertpub.com/doi/10.1089/cmb.2009.0111
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http://dx.doi.org/10.1089/cmb.2009.0111DOI Listing
March 2014

VoteDock: consensus docking method for prediction of protein-ligand interactions.

J Comput Chem 2011 Mar 1;32(4):568-81. Epub 2010 Sep 1.

Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Pawinskiego 5a Street, 02-106 Warsaw, Poland.

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http://doi.wiley.com/10.1002/jcc.21642
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http://dx.doi.org/10.1002/jcc.21642DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510457PMC
March 2011

Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila.

Genome Res 2010 Aug 2;20(8):1084-96. Epub 2010 Jul 2.

Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California 92697, USA.

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http://genome.cshlp.org/content/early/2010/07/02/gr.103713.1
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http://genome.cshlp.org/cgi/doi/10.1101/gr.103713.109
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http://dx.doi.org/10.1101/gr.103713.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909571PMC
August 2010

Comparison of proteins based on segments structural similarity.

Acta Biochim Pol 2004 ;51(1):161-72

Interdisciplinary Center for Mathematical and Computational Modeling Warsaw University, Warszawa, Poland.

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http://dx.doi.org/045101161DOI Listing
September 2009

Virtual high throughput screening using combined random forest and flexible docking.

Comb Chem High Throughput Screen 2009 Jun;12(5):484-9

Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Pawinskiego 5a, 02-106 Warsaw, Poland.

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http://dx.doi.org/10.2174/138620709788489000DOI Listing
June 2009

3D-Fun: predicting enzyme function from structure.

Nucleic Acids Res 2008 Jul 30;36(Web Server issue):W303-7. Epub 2008 May 30.

CMBI, NCMLS, Radboud University Nijmegen Medical Centre, Geert Grooteplein 26-28, 6525 GA Nijmegen, The Netherlands.

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http://dx.doi.org/10.1093/nar/gkn308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447717PMC
July 2008

In silico prediction of SARS protease inhibitors by virtual high throughput screening.

Chem Biol Drug Des 2007 Apr;69(4):269-79

Interdisciplinary Centre for Mathematical and Computational Modeling, University of Warsaw, Pawinskiego 5a Street, 02-106 Warsaw, Poland.

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http://dx.doi.org/10.1111/j.1747-0285.2007.00475.xDOI Listing
April 2007

Target specific compound identification using a support vector machine.

Comb Chem High Throughput Screen 2007 Mar;10(3):189-96

BioInfoBank Institute, Limanowskiego 24A/16, 60-744 Poznan, Poland.

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http://dx.doi.org/10.2174/138620707780126705DOI Listing
March 2007

Influenza mutation from equine to canine.

Science 2006 Mar;311(5765):1241-2; author reply 1241-2

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http://dx.doi.org/10.1126/science.311.5765.1241DOI Listing
March 2006

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.

BMC Bioinformatics 2006 Feb 6;7:53. Epub 2006 Feb 6.

Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-7-53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1409798PMC
February 2006

Ligand.Info small-molecule Meta-Database.

Comb Chem High Throughput Screen 2004 Dec;7(8):757-61

BioInfoBank Institute, ul. Limanowskiego 24A, 60-744 Poznan, Poland.

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http://dx.doi.org/10.2174/1386207043328265DOI Listing
December 2004

Structure prediction, evolution and ligand interaction of CHASE domain.

FEBS Lett 2004 Oct;576(3):287-90

BioInfoBank Institute, ul. Limanowskiego 24A, 60-744 Poznan, Poland.

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http://dx.doi.org/10.1016/j.febslet.2004.09.020DOI Listing
October 2004

Detecting distant homology with Meta-BASIC.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W576-81

Department of Biochemistry, University of Texas, Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9038, USA.

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http://dx.doi.org/10.1093/nar/gkh370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441508PMC
July 2004

3D-Hit: fast structural comparison of proteins.

Appl Bioinformatics 2002 ;1(4):223-5

Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Warsaw, Poland.

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June 2004

Predicting protein structures accurately.

Science 2004 Jun;304(5677):1597-9; author reply 1597-9

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http://dx.doi.org/10.1126/science.304.5677.1597bDOI Listing
June 2004

Application of 3D-Jury, GRDB, and Verify3D in fold recognition.

Proteins 2003 ;53 Suppl 6:418-23

BioInfoBank Institute, Poznan, Poland.

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http://dx.doi.org/10.1002/prot.10547DOI Listing
January 2004

How unique is the rice transcriptome?

Science 2004 Jan;303(5655):168; author reply 168

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http://dx.doi.org/10.1126/science.303.5655.168bDOI Listing
January 2004

Ligand-Info, searching for similar small compounds using index profiles.

Bioinformatics 2003 May;19(8):1041-2

BioInfoBank Institute, ul. Limanowskiego 24A, 60-744 Poznan, Poland.

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http://dx.doi.org/10.1093/bioinformatics/btg117DOI Listing
May 2003