Publications by authors named "Marcin Kierczak"

23Publications

Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros.

Curr Biol 2020 Oct 13;30(19):3871-3879.e7. Epub 2020 Aug 13.

Centre for Palaeogenetics, Svante Arrhenius väg 20C, Stockholm 10691, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, Stockholm 10405, Sweden; Department of Zoology, Stockholm University, Stockholm 10691, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2020.07.046DOI Listing
October 2020

Predicting Post-Translational Modifications from Local Sequence Fragments Using Machine Learning Algorithms: Overview and Best Practices.

Methods Mol Biol 2017 ;1484:275-300

Centre of New Technologies, University of Warsaw, S. Banacha 2c, Warsaw, 02-097, Poland.

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http://dx.doi.org/10.1007/978-1-4939-6406-2_19DOI Listing
January 2018

cgmisc: enhanced genome-wide association analyses and visualization.

Bioinformatics 2015 Dec 6;31(23):3830-1. Epub 2015 Aug 6.

Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden, Broad Institute of MIT and Harvard, Boston, MA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4653382PMC
December 2015

Ensemble learning prediction of protein-protein interactions using proteins functional annotations.

Mol Biosyst 2014 Apr 27;10(4):820-30. Epub 2014 Jan 27.

Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Warsaw, Poland.

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http://dx.doi.org/10.1039/c3mb70486fDOI Listing
April 2014

Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data.

Front Genet 2013 5;4:226. Epub 2013 Nov 5.

Division of Computational Genetics, Department of Clinical Sciences, Swedish University of Agricultural Sciences Uppsala, Sweden.

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http://dx.doi.org/10.3389/fgene.2013.00226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817360PMC
November 2013

MAPfastR: quantitative trait loci mapping in outbred line crosses.

G3 (Bethesda) 2013 Dec 9;3(12):2147-9. Epub 2013 Dec 9.

Department of Clinical Sciences, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden.

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http://dx.doi.org/10.1534/g3.113.008623DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852377PMC
December 2013

Higher order interactions: detection of epistasis using machine learning and evolutionary computation.

Methods Mol Biol 2013 ;1019:499-518

Department of Clinical Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://dx.doi.org/10.1007/978-1-62703-447-0_24DOI Listing
December 2013

PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties.

Front Genet 2013 6;4:21. Epub 2013 Mar 6.

Division of Computational Genetics, Department of Clinical Sciences, Swedish University of Agricultural Sciences Uppsala, Sweden.

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http://dx.doi.org/10.3389/fgene.2013.00021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3589708PMC
March 2013

Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands.

Mol Ecol 2013 Mar 7;22(5):1322-40. Epub 2013 Jan 7.

Population Biology and Conservation Biology/Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1111/mec.12181DOI Listing
March 2013

Computational Analysis of Molecular Interaction Networks Underlying Change of HIV-1 Resistance to Selected Reverse Transcriptase Inhibitors.

Bioinform Biol Insights 2010 Dec 12;4:137-46. Epub 2010 Dec 12.

The Linnaeus Centre for Bioinformatics, Uppsala University, 751-24 Uppsala, Sweden.

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http://dx.doi.org/10.4137/BBI.S6247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020081PMC
December 2010

A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome.

Bioinform Biol Insights 2009 Oct 5;3:109-27. Epub 2009 Oct 5.

The Linnaeus Centre for Bioinformatics, Uppsala University BMC, Box 598, Husargatan 3, SE-751 24 Uppsala, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808174PMC
http://dx.doi.org/10.4137/bbi.s3382DOI Listing
October 2009

[Role of the adaptins, dynamin like GTP-ases and Rab proteins in metabolic disorders and various infections].

Postepy Hig Med Dosw 2003 ;57(6):727-37

Zakład Biologii Komórki, Instytut Biologii Doświadczalnej im. M. Nenckiego PAN w Warszawie.

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May 2004