Publications by authors named "Marcela K Tello-Ruiz"

8Publications

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.

Authors:
Marcela K Tello-Ruiz Sushma Naithani Parul Gupta Andrew Olson Sharon Wei Justin Preece Yinping Jiao Bo Wang Kapeel Chougule Priyanka Garg Justin Elser Sunita Kumari Vivek Kumar Bruno Contreras-Moreira Guy Naamati Nancy George Justin Cook Daniel Bolser Peter D'Eustachio Lincoln D Stein Amit Gupta Weijia Xu Jennifer Regala Irene Papatheodorou Paul J Kersey Paul Flicek Crispin Taylor Pankaj Jaiswal Doreen Ware

Nucleic Acids Res 2020 Nov 10. Epub 2020 Nov 10.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1093/nar/gkaa979DOI Listing
November 2020

Plant Reactome: a knowledgebase and resource for comparative pathway analysis.

Authors:
Sushma Naithani Parul Gupta Justin Preece Peter D'Eustachio Justin L Elser Priyanka Garg Daemon A Dikeman Jason Kiff Justin Cook Andrew Olson Sharon Wei Marcela K Tello-Ruiz Antonio Fabregat Mundo Alfonso Munoz-Pomer Suhaib Mohammed Tiejun Cheng Evan Bolton Irene Papatheodorou Lincoln Stein Doreen Ware Pankaj Jaiswal

Nucleic Acids Res 2020 01;48(D1):D1093-D1103

Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA.

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http://dx.doi.org/10.1093/nar/gkz996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7145600PMC
January 2020

Double triage to identify poorly annotated genes in maize: The missing link in community curation.

Authors:
Marcela K Tello-Ruiz Cristina F Marco Fei-Man Hsu Rajdeep S Khangura Pengfei Qiao Sirjan Sapkota Michelle C Stitzer Rachael Wasikowski Hao Wu Junpeng Zhan Kapeel Chougule Lindsay C Barone Cornel Ghiban Demitri Muna Andrew C Olson Liya Wang Doreen Ware David A Micklos

PLoS One 2019 28;14(10):e0224086. Epub 2019 Oct 28.

DNA Learning Center, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0224086PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6816542PMC
March 2020

Ensembl Genomes 2020-enabling non-vertebrate genomic research.

Authors:
Kevin L Howe Bruno Contreras-Moreira Nishadi De Silva Gareth Maslen Wasiu Akanni James Allen Jorge Alvarez-Jarreta Matthieu Barba Dan M Bolser Lahcen Cambell Manuel Carbajo Marc Chakiachvili Mikkel Christensen Carla Cummins Alayne Cuzick Paul Davis Silvie Fexova Astrid Gall Nancy George Laurent Gil Parul Gupta Kim E Hammond-Kosack Erin Haskell Sarah E Hunt Pankaj Jaiswal Sophie H Janacek Paul J Kersey Nick Langridge Uma Maheswari Thomas Maurel Mark D McDowall Ben Moore Matthieu Muffato Guy Naamati Sushma Naithani Andrew Olson Irene Papatheodorou Mateus Patricio Michael Paulini Helder Pedro Emily Perry Justin Preece Marc Rosello Matthew Russell Vasily Sitnik Daniel M Staines Joshua Stein Marcela K Tello-Ruiz Stephen J Trevanion Martin Urban Sharon Wei Doreen Ware Gary Williams Andrew D Yates Paul Flicek

Nucleic Acids Res 2020 01;48(D1):D689-D695

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkz890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6943047PMC
January 2020

Gramene 2018: unifying comparative genomics and pathway resources for plant research.

Authors:
Marcela K Tello-Ruiz Sushma Naithani Joshua C Stein Parul Gupta Michael Campbell Andrew Olson Sharon Wei Justin Preece Matthew J Geniza Yinping Jiao Young Koung Lee Bo Wang Joseph Mulvaney Kapeel Chougule Justin Elser Noor Al-Bader Sunita Kumari James Thomason Vivek Kumar Daniel M Bolser Guy Naamati Electra Tapanari Nuno Fonseca Laura Huerta Haider Iqbal Maria Keays Alfonso Munoz-Pomer Fuentes Amy Tang Antonio Fabregat Peter D'Eustachio Joel Weiser Lincoln D Stein Robert Petryszak Irene Papatheodorou Paul J Kersey Patti Lockhart Crispin Taylor Pankaj Jaiswal Doreen Ware

Nucleic Acids Res 2018 01;46(D1):D1181-D1189

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://academic.oup.com/nar/article/46/D1/D1181/4641898
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http://dx.doi.org/10.1093/nar/gkx1111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753211PMC
January 2018

Gramene 2016: comparative plant genomics and pathway resources.

Authors:
Marcela K Tello-Ruiz Joshua Stein Sharon Wei Justin Preece Andrew Olson Sushma Naithani Vindhya Amarasinghe Palitha Dharmawardhana Yinping Jiao Joseph Mulvaney Sunita Kumari Kapeel Chougule Justin Elser Bo Wang James Thomason Daniel M Bolser Arnaud Kerhornou Brandon Walts Nuno A Fonseca Laura Huerta Maria Keays Y Amy Tang Helen Parkinson Antonio Fabregat Sheldon McKay Joel Weiser Peter D'Eustachio Lincoln Stein Robert Petryszak Paul J Kersey Pankaj Jaiswal Doreen Ware

Nucleic Acids Res 2016 Jan 8;44(D1):D1133-40. Epub 2015 Nov 8.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA USDA ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853, USA

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http://dx.doi.org/10.1093/nar/gkv1179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702844PMC
January 2016

Genome-wide detection and characterization of positive selection in human populations.

Authors:
Pardis C Sabeti Patrick Varilly Ben Fry Jason Lohmueller Elizabeth Hostetter Chris Cotsapas Xiaohui Xie Elizabeth H Byrne Steven A McCarroll Rachelle Gaudet Stephen F Schaffner Eric S Lander Kelly A Frazer Dennis G Ballinger David R Cox David A Hinds Laura L Stuve Richard A Gibbs John W Belmont Andrew Boudreau Paul Hardenbol Suzanne M Leal Shiran Pasternak David A Wheeler Thomas D Willis Fuli Yu Huanming Yang Changqing Zeng Yang Gao Haoran Hu Weitao Hu Chaohua Li Wei Lin Siqi Liu Hao Pan Xiaoli Tang Jian Wang Wei Wang Jun Yu Bo Zhang Qingrun Zhang Hongbin Zhao Hui Zhao Jun Zhou Stacey B Gabriel Rachel Barry Brendan Blumenstiel Amy Camargo Matthew Defelice Maura Faggart Mary Goyette Supriya Gupta Jamie Moore Huy Nguyen Robert C Onofrio Melissa Parkin Jessica Roy Erich Stahl Ellen Winchester Liuda Ziaugra David Altshuler Yan Shen Zhijian Yao Wei Huang Xun Chu Yungang He Li Jin Yangfan Liu Yayun Shen Weiwei Sun Haifeng Wang Yi Wang Ying Wang Xiaoyan Xiong Liang Xu Mary M Y Waye Stephen K W Tsui Hong Xue J Tze-Fei Wong Luana M Galver Jian-Bing Fan Kevin Gunderson Sarah S Murray Arnold R Oliphant Mark S Chee Alexandre Montpetit Fanny Chagnon Vincent Ferretti Martin Leboeuf Jean-François Olivier Michael S Phillips Stéphanie Roumy Clémentine Sallée Andrei Verner Thomas J Hudson Pui-Yan Kwok Dongmei Cai Daniel C Koboldt Raymond D Miller Ludmila Pawlikowska Patricia Taillon-Miller Ming Xiao Lap-Chee Tsui William Mak You Qiang Song Paul K H Tam Yusuke Nakamura Takahisa Kawaguchi Takuya Kitamoto Takashi Morizono Atsushi Nagashima Yozo Ohnishi Akihiro Sekine Toshihiro Tanaka Tatsuhiko Tsunoda Panos Deloukas Christine P Bird Marcos Delgado Emmanouil T Dermitzakis Rhian Gwilliam Sarah Hunt Jonathan Morrison Don Powell Barbara E Stranger Pamela Whittaker David R Bentley Mark J Daly Paul I W de Bakker Jeff Barrett Yves R Chretien Julian Maller Steve McCarroll Nick Patterson Itsik Pe'er Alkes Price Shaun Purcell Daniel J Richter Pardis Sabeti Richa Saxena Stephen F Schaffner Pak C Sham Patrick Varilly David Altshuler Lincoln D Stein Lalitha Krishnan Albert Vernon Smith Marcela K Tello-Ruiz Gudmundur A Thorisson Aravinda Chakravarti Peter E Chen David J Cutler Carl S Kashuk Shin Lin Gonçalo R Abecasis Weihua Guan Yun Li Heather M Munro Zhaohui Steve Qin Daryl J Thomas Gilean McVean Adam Auton Leonardo Bottolo Niall Cardin Susana Eyheramendy Colin Freeman Jonathan Marchini Simon Myers Chris Spencer Matthew Stephens Peter Donnelly Lon R Cardon Geraldine Clarke David M Evans Andrew P Morris Bruce S Weir Tatsuhiko Tsunoda Todd A Johnson James C Mullikin Stephen T Sherry Michael Feolo Andrew Skol Houcan Zhang Changqing Zeng Hui Zhao Ichiro Matsuda Yoshimitsu Fukushima Darryl R Macer Eiko Suda Charles N Rotimi Clement A Adebamowo Ike Ajayi Toyin Aniagwu Patricia A Marshall Chibuzor Nkwodimmah Charmaine D M Royal Mark F Leppert Missy Dixon Andy Peiffer Renzong Qiu Alastair Kent Kazuto Kato Norio Niikawa Isaac F Adewole Bartha M Knoppers Morris W Foster Ellen Wright Clayton Jessica Watkin Richard A Gibbs John W Belmont Donna Muzny Lynne Nazareth Erica Sodergren George M Weinstock David A Wheeler Imtaz Yakub Stacey B Gabriel Robert C Onofrio Daniel J Richter Liuda Ziaugra Bruce W Birren Mark J Daly David Altshuler Richard K Wilson Lucinda L Fulton Jane Rogers John Burton Nigel P Carter Christopher M Clee Mark Griffiths Matthew C Jones Kirsten McLay Robert W Plumb Mark T Ross Sarah K Sims David L Willey Zhu Chen Hua Han Le Kang Martin Godbout John C Wallenburg Paul L'Archevêque Guy Bellemare Koji Saeki Hongguang Wang Daochang An Hongbo Fu Qing Li Zhen Wang Renwu Wang Arthur L Holden Lisa D Brooks Jean E McEwen Mark S Guyer Vivian Ota Wang Jane L Peterson Michael Shi Jack Spiegel Lawrence M Sung Lynn F Zacharia Francis S Collins Karen Kennedy Ruth Jamieson John Stewart

Nature 2007 Oct;449(7164):913-8

Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02139, USA.

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https://www.genome.gov/Pages/Newsroom/CurrentNewsReleases/Le
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http://www.nature.com/doifinder/10.1038/nature06250
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http://dx.doi.org/10.1038/nature06250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721PMC
October 2007

A second generation human haplotype map of over 3.1 million SNPs.

Authors:
Kelly A Frazer Dennis G Ballinger David R Cox David A Hinds Laura L Stuve Richard A Gibbs John W Belmont Andrew Boudreau Paul Hardenbol Suzanne M Leal Shiran Pasternak David A Wheeler Thomas D Willis Fuli Yu Huanming Yang Changqing Zeng Yang Gao Haoran Hu Weitao Hu Chaohua Li Wei Lin Siqi Liu Hao Pan Xiaoli Tang Jian Wang Wei Wang Jun Yu Bo Zhang Qingrun Zhang Hongbin Zhao Hui Zhao Jun Zhou Stacey B Gabriel Rachel Barry Brendan Blumenstiel Amy Camargo Matthew Defelice Maura Faggart Mary Goyette Supriya Gupta Jamie Moore Huy Nguyen Robert C Onofrio Melissa Parkin Jessica Roy Erich Stahl Ellen Winchester Liuda Ziaugra David Altshuler Yan Shen Zhijian Yao Wei Huang Xun Chu Yungang He Li Jin Yangfan Liu Yayun Shen Weiwei Sun Haifeng Wang Yi Wang Ying Wang Xiaoyan Xiong Liang Xu Mary M Y Waye Stephen K W Tsui Hong Xue J Tze-Fei Wong Luana M Galver Jian-Bing Fan Kevin Gunderson Sarah S Murray Arnold R Oliphant Mark S Chee Alexandre Montpetit Fanny Chagnon Vincent Ferretti Martin Leboeuf Jean-François Olivier Michael S Phillips Stéphanie Roumy Clémentine Sallée Andrei Verner Thomas J Hudson Pui-Yan Kwok Dongmei Cai Daniel C Koboldt Raymond D Miller Ludmila Pawlikowska Patricia Taillon-Miller Ming Xiao Lap-Chee Tsui William Mak You Qiang Song Paul K H Tam Yusuke Nakamura Takahisa Kawaguchi Takuya Kitamoto Takashi Morizono Atsushi Nagashima Yozo Ohnishi Akihiro Sekine Toshihiro Tanaka Tatsuhiko Tsunoda Panos Deloukas Christine P Bird Marcos Delgado Emmanouil T Dermitzakis Rhian Gwilliam Sarah Hunt Jonathan Morrison Don Powell Barbara E Stranger Pamela Whittaker David R Bentley Mark J Daly Paul I W de Bakker Jeff Barrett Yves R Chretien Julian Maller Steve McCarroll Nick Patterson Itsik Pe'er Alkes Price Shaun Purcell Daniel J Richter Pardis Sabeti Richa Saxena Stephen F Schaffner Pak C Sham Patrick Varilly David Altshuler Lincoln D Stein Lalitha Krishnan Albert Vernon Smith Marcela K Tello-Ruiz Gudmundur A Thorisson Aravinda Chakravarti Peter E Chen David J Cutler Carl S Kashuk Shin Lin Gonçalo R Abecasis Weihua Guan Yun Li Heather M Munro Zhaohui Steve Qin Daryl J Thomas Gilean McVean Adam Auton Leonardo Bottolo Niall Cardin Susana Eyheramendy Colin Freeman Jonathan Marchini Simon Myers Chris Spencer Matthew Stephens Peter Donnelly Lon R Cardon Geraldine Clarke David M Evans Andrew P Morris Bruce S Weir Tatsuhiko Tsunoda James C Mullikin Stephen T Sherry Michael Feolo Andrew Skol Houcan Zhang Changqing Zeng Hui Zhao Ichiro Matsuda Yoshimitsu Fukushima Darryl R Macer Eiko Suda Charles N Rotimi Clement A Adebamowo Ike Ajayi Toyin Aniagwu Patricia A Marshall Chibuzor Nkwodimmah Charmaine D M Royal Mark F Leppert Missy Dixon Andy Peiffer Renzong Qiu Alastair Kent Kazuto Kato Norio Niikawa Isaac F Adewole Bartha M Knoppers Morris W Foster Ellen Wright Clayton Jessica Watkin Richard A Gibbs John W Belmont Donna Muzny Lynne Nazareth Erica Sodergren George M Weinstock David A Wheeler Imtaz Yakub Stacey B Gabriel Robert C Onofrio Daniel J Richter Liuda Ziaugra Bruce W Birren Mark J Daly David Altshuler Richard K Wilson Lucinda L Fulton Jane Rogers John Burton Nigel P Carter Christopher M Clee Mark Griffiths Matthew C Jones Kirsten McLay Robert W Plumb Mark T Ross Sarah K Sims David L Willey Zhu Chen Hua Han Le Kang Martin Godbout John C Wallenburg Paul L'Archevêque Guy Bellemare Koji Saeki Hongguang Wang Daochang An Hongbo Fu Qing Li Zhen Wang Renwu Wang Arthur L Holden Lisa D Brooks Jean E McEwen Mark S Guyer Vivian Ota Wang Jane L Peterson Michael Shi Jack Spiegel Lawrence M Sung Lynn F Zacharia Francis S Collins Karen Kennedy Ruth Jamieson John Stewart

Nature 2007 Oct;449(7164):851-61

The Scripps Research Institute, 10550 North Torrey Pines Road MEM275, La Jolla, California 92037, USA.

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https://www.genome.gov/Pages/Newsroom/CurrentNewsReleases/In
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http://www.nature.com/doifinder/10.1038/nature06258
Publisher Site
http://dx.doi.org/10.1038/nature06258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689609PMC
October 2007