Marc Vaudel

Marc Vaudel

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Marc Vaudel

Marc Vaudel

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A trans-ancestral meta-analysis of genome-wide association studies reveals loci associated with childhood obesity.

Authors:
Jonathan P Bradfield Suzanne Vogelezang Janine F Felix Alessandra Chesi Øyvind Helgeland Momoko Horikoshi Ville Karhunen Estelle Lowry Diana L Cousminer Tarunveer S Ahluwalia Elisabeth Thiering Eileen Tai-Hui Boh Mohammad H Zafarmand Natalia Vilor-Tejedor Carol A Wang Raimo Joro Zhanghua Chen William J Gauderman Niina Pitkänen Esteban J Parra Lindsay Fernandez-Rhodes Akram Alyass Claire Monnereau John A Curtin Christian T Have Shana E McCormack Mette Hollensted Christine Frithioff-Bøjsøe Adan Valladares-Salgado Jesus Peralta-Romero Yik-Ying Teo Marie Standl Jaakko T Leinonen Jens-Christian Holm Triinu Peters Jesus Vioque Martine Vrijheid Angela Simpson Adnan Custovic Marc Vaudel Mickaël Canouil Virpi Lindi Mustafa Atalay Mika Kähönen Olli T Raitakari Barbera D C van Schaik Robert I Berkowitz Shelley A Cole V Saroja Voruganti Yujie Wang Heather M Highland Anthony G Comuzzie Nancy F Butte Anne E Justice Sheila Gahagan Estela Blanco Terho Lehtimäki Timo A Lakka Johannes Hebebrand Amélie Bonnefond Niels Grarup Philippe Froguel Leo-Pekka Lyytikäinen Miguel Cruz Sayuko Kobes Robert L Hanson Babette S Zemel Anke Hinney Koon K Teo David Meyre Kari E North Frank D Gilliland Hans Bisgaard Mariona Bustamante Klaus Bonnelykke Craig E Pennell Fernando Rivadeneira André G Uitterlinden Leslie J Baier Tanja G M Vrijkotte Joachim Heinrich Thorkild I A Sørensen Seang-Mei Saw Oluf Pedersen Torben Hansen Johan Eriksson Elisabeth Widén Mark I McCarthy Pål R Njølstad Christine Power Elina Hyppönen Sylvain Sebert Christopher D Brown Marjo-Riitta Järvelin Nicholas J Timpson Stefan Johansson Hakon Hakonarson Vincent W V Jaddoe

Hum Mol Genet 2019 Oct;28(19):3327-3338

The Generation R Study Group, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

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http://dx.doi.org/10.1093/hmg/ddz161DOI Listing
October 2019

Introducing M-GCTA a Software Package to Estimate Maternal (or Paternal) Genetic Effects on Offspring Phenotypes.

Behav Genet 2019 Sep 6. Epub 2019 Sep 6.

University of Queensland Diamantina Institute, University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1007/s10519-019-09969-4DOI Listing
September 2019

PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping.

Gigascience 2019 08;8(8)

K.G. Jebsen Center for Diabetes Research, Department of Clinical Science, University of Bergen, Children's Hospital, Haukeland University Hospital, 5021 Bergen, Norway.

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http://dx.doi.org/10.1093/gigascience/giz088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6667378PMC
August 2019

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.

Authors:
Nicole M Warrington Robin N Beaumont Momoko Horikoshi Felix R Day Øyvind Helgeland Charles Laurin Jonas Bacelis Shouneng Peng Ke Hao Bjarke Feenstra Andrew R Wood Anubha Mahajan Jessica Tyrrell Neil R Robertson N William Rayner Zhen Qiao Gunn-Helen Moen Marc Vaudel Carmen J Marsit Jia Chen Michael Nodzenski Theresia M Schnurr Mohammad H Zafarmand Jonathan P Bradfield Niels Grarup Marjolein N Kooijman Ruifang Li-Gao Frank Geller Tarunveer S Ahluwalia Lavinia Paternoster Rico Rueedi Ville Huikari Jouke-Jan Hottenga Leo-Pekka Lyytikäinen Alana Cavadino Sarah Metrustry Diana L Cousminer Ying Wu Elisabeth Thiering Carol A Wang Christian T Have Natalia Vilor-Tejedor Peter K Joshi Jodie N Painter Ioanna Ntalla Ronny Myhre Niina Pitkänen Elisabeth M van Leeuwen Raimo Joro Vasiliki Lagou Rebecca C Richmond Ana Espinosa Sheila J Barton Hazel M Inskip John W Holloway Loreto Santa-Marina Xavier Estivill Wei Ang Julie A Marsh Christoph Reichetzeder Letizia Marullo Berthold Hocher Kathryn L Lunetta Joanne M Murabito Caroline L Relton Manolis Kogevinas Leda Chatzi Catherine Allard Luigi Bouchard Marie-France Hivert Ge Zhang Louis J Muglia Jani Heikkinen Camilla S Morgen Antoine H C van Kampen Barbera D C van Schaik Frank D Mentch Claudia Langenberg Jian'an Luan Robert A Scott Jing Hua Zhao Gibran Hemani Susan M Ring Amanda J Bennett Kyle J Gaulton Juan Fernandez-Tajes Natalie R van Zuydam Carolina Medina-Gomez Hugoline G de Haan Frits R Rosendaal Zoltán Kutalik Pedro Marques-Vidal Shikta Das Gonneke Willemsen Hamdi Mbarek Martina Müller-Nurasyid Marie Standl Emil V R Appel Cilius E Fonvig Caecilie Trier Catharina E M van Beijsterveldt Mario Murcia Mariona Bustamante Sílvia Bonas-Guarch David M Hougaard Josep M Mercader Allan Linneberg Katharina E Schraut Penelope A Lind Sarah E Medland Beverley M Shields Bridget A Knight Jin-Fang Chai Kalliope Panoutsopoulou Meike Bartels Friman Sánchez Jakob Stokholm David Torrents Rebecca K Vinding Sara M Willems Mustafa Atalay Bo L Chawes Peter Kovacs Inga Prokopenko Marcus A Tuke Hanieh Yaghootkar Katherine S Ruth Samuel E Jones Po-Ru Loh Anna Murray Michael N Weedon Anke Tönjes Michael Stumvoll Kim F Michaelsen Aino-Maija Eloranta Timo A Lakka Cornelia M van Duijn Wieland Kiess Antje Körner Harri Niinikoski Katja Pahkala Olli T Raitakari Bo Jacobsson Eleftheria Zeggini George V Dedoussis Yik-Ying Teo Seang-Mei Saw Grant W Montgomery Harry Campbell James F Wilson Tanja G M Vrijkotte Martine Vrijheid Eco J C N de Geus M Geoffrey Hayes Haja N Kadarmideen Jens-Christian Holm Lawrence J Beilin Craig E Pennell Joachim Heinrich Linda S Adair Judith B Borja Karen L Mohlke Johan G Eriksson Elisabeth E Widén Andrew T Hattersley Tim D Spector Mika Kähönen Jorma S Viikari Terho Lehtimäki Dorret I Boomsma Sylvain Sebert Peter Vollenweider Thorkild I A Sørensen Hans Bisgaard Klaus Bønnelykke Jeffrey C Murray Mads Melbye Ellen A Nohr Dennis O Mook-Kanamori Fernando Rivadeneira Albert Hofman Janine F Felix Vincent W V Jaddoe Torben Hansen Charlotta Pisinger Allan A Vaag Oluf Pedersen André G Uitterlinden Marjo-Riitta Järvelin Christine Power Elina Hyppönen Denise M Scholtens William L Lowe George Davey Smith Nicholas J Timpson Andrew P Morris Nicholas J Wareham Hakon Hakonarson Struan F A Grant Timothy M Frayling Debbie A Lawlor Pål R Njølstad Stefan Johansson Ken K Ong Mark I McCarthy John R B Perry David M Evans Rachel M Freathy

Nat Genet 2019 05 1;51(5):804-814. Epub 2019 May 1.

Institute of Biomedical and Clinical Science, College of Medicine and Health, University of Exeter, Royal Devon and Exeter Hospital, Exeter, UK.

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http://dx.doi.org/10.1038/s41588-019-0403-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522365PMC
May 2019

Software engineering for scientific big data analysis.

Gigascience 2019 05;8(5)

Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue / NE50, Cleveland, OH, USA.

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http://dx.doi.org/10.1093/gigascience/giz054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6532757PMC
May 2019

PDV: an integrative proteomics data viewer.

Bioinformatics 2019 Apr;35(7):1249-1251

Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty770DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821182PMC
April 2019

Effect of disease-associated SLC9A9 mutations on protein-protein interaction networks: implications for molecular mechanisms for ADHD and autism.

Atten Defic Hyperact Disord 2019 Mar 29;11(1):91-105. Epub 2019 Mar 29.

Departments of Psychiatry, SUNY Upstate Medical University, 750 East Adams St., Syracuse, NY, 13210, USA.

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http://dx.doi.org/10.1007/s12402-018-0281-xDOI Listing
March 2019

Analyzing the Structure of Pathways and Its Influence on the Interpretation of Biomedical Proteomics Data Sets.

J Proteome Res 2018 11 24;17(11):3801-3809. Epub 2018 Oct 24.

KG Jebsen Center for Diabetes Research, Department of Clinical Science , University of Bergen , 5020 Bergen , Norway.

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http://dx.doi.org/10.1021/acs.jproteome.8b00464DOI Listing
November 2018

Proceedings of the EuBIC developer's meeting 2018.

J Proteomics 2018 09 2;187:25-27. Epub 2018 Jun 2.

Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium; Department of Genome Sciences, University of Washington, Seattle, WA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2018.05.015DOI Listing
September 2018

A Potential Golden Age to Come-Current Tools, Recent Use Cases, and Future Avenues for De Novo Sequencing in Proteomics.

Proteomics 2018 09 22;18(18):e1700150. Epub 2018 Aug 22.

Bioinformatics Unit (MF 1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, 13353, Berlin, Germany.

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http://dx.doi.org/10.1002/pmic.201700150DOI Listing
September 2018

SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines.

J Proteome Res 2018 07 25;17(7):2552-2555. Epub 2018 May 25.

Center for Medical Genetics and Molecular Medicine , Haukeland University Hospital , 5021 Bergen , Norway.

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http://dx.doi.org/10.1021/acs.jproteome.8b00175DOI Listing
July 2018

Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis.

Methods Mol Biol 2017 ;1558:437-458

Proteomics Unit, Department of Biomedicine, University of Bergen, Jonas Lies vei 91, 5020, Bergen, Norway.

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http://dx.doi.org/10.1007/978-1-4939-6783-4_21DOI Listing
February 2018

Genome-wide association study of offspring birth weight in 86 577 women identifies five novel loci and highlights maternal genetic effects that are independent of fetal genetics.

Hum Mol Genet 2018 02;27(4):742-756

Institute of Biomedical and Clinical Science, University of Exeter Medical School, University of Exeter, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.

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http://dx.doi.org/10.1093/hmg/ddx429DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5886200PMC
February 2018

Database Search Engines: Paradigms, Challenges and Solutions.

Adv Exp Med Biol 2016 ;919:147-156

Proteomics Unit, Department of Biomedicine, University of Bergen, Jonas Liesvei 91, N-5009, Bergen, Norway.

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http://dx.doi.org/10.1007/978-3-319-41448-5_6DOI Listing
September 2017

Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.

Adv Exp Med Biol 2016 ;919:217-226

Proteomics Unit, Department of Biomedicine, University of Bergen, Jonas Liesvei 91, N-5009, Bergen, Norway.

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http://dx.doi.org/10.1007/978-3-319-41448-5_10DOI Listing
September 2017

Visualization, Inspection and Interpretation of Shotgun Proteomics Identification Results.

Adv Exp Med Biol 2016 ;919:227-235

Proteomics Unit, Department of Biomedicine, University of Bergen, Jonas Liesvei 91, N-5009, Bergen, Norway.

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http://dx.doi.org/10.1007/978-3-319-41448-5_11DOI Listing
September 2017

Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows.

Mass Spectrom Rev 2017 Sep 13. Epub 2017 Sep 13.

KG Jebsen Center for Diabetes Research, Department of Clinical Science, University of Bergen, Norway.

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http://dx.doi.org/10.1002/mas.21543DOI Listing
September 2017

Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers.

Expert Rev Proteomics 2017 08 27;14(8):649-663. Epub 2017 Jul 27.

a Department of Clinical Science, Faculty of Medicine and Dentistry , University of Bergen , Bergen , Norway.

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http://dx.doi.org/10.1080/14789450.2017.1352474DOI Listing
August 2017

PeptideMapper: efficient and versatile amino acid sequence and tag mapping.

Bioinformatics 2017 Jul;33(13):2042-2044

Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V, Dortmund 44227, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btx122DOI Listing
July 2017

Using Proteomics Bioinformatics Tools and Resources in Proteogenomic Studies.

Adv Exp Med Biol 2016 ;926:65-75

Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1007/978-3-319-42316-6_5DOI Listing
June 2017

Proceedings of the EuBIC Winter School 2017.

J Proteomics 2017 05 4;161:78-80. Epub 2017 Apr 4.

Bioinformatics Research Group, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2017.04.001DOI Listing
May 2017

In-Depth Cerebrospinal Fluid Quantitative Proteome and Deglycoproteome Analysis: Presenting a Comprehensive Picture of Pathways and Processes Affected by Multiple Sclerosis.

J Proteome Res 2017 01 26;16(1):179-194. Epub 2016 Oct 26.

Proteomics Unit (PROBE), Department of Biomedicine, ‡The KG Jebsen Centre for MS Research, Department of Clinical Medicine, §KG Jebsen Center for Diabetes Research, Department of Clinical Science, and ⊥Computational Biology Unit, Department of Informatics, University of Bergen , Bergen N-5009, Norway.

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http://dx.doi.org/10.1021/acs.jproteome.6b00659DOI Listing
January 2017

Interpretation of Quantitative Shotgun Proteomic Data.

Methods Mol Biol 2016 ;1394:261-273

Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1007/978-1-4939-3341-9_19DOI Listing
October 2016

A Simple Workflow for Large Scale Shotgun Glycoproteomics.

Methods Mol Biol 2016 ;1394:275-286

Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway.

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http://link.springer.com/content/pdf/10.1007/978-1-4939-3341
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http://link.springer.com/10.1007/978-1-4939-3341-9_20
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http://dx.doi.org/10.1007/978-1-4939-3341-9_20DOI Listing
October 2016

Systemic Analysis of Regulated Functional Networks.

Methods Mol Biol 2016 ;1394:287-310

Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1007/978-1-4939-3341-9_21DOI Listing
October 2016

Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows.

J Proteomics 2016 08 20;145:214-225. Epub 2016 Apr 20.

Department of Biomedicine, Faculty of Medicine and Dentistry, University of Bergen, Bergen, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2016.03.049DOI Listing
August 2016

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients.

Biol Proced Online 2016 21;18:13. Epub 2016 Jun 21.

Department of Biomedicine, Faculty of Medicine and Dentistry, University of Bergen, Jonas Lies vei 91, 5009 Bergen, Norway.

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http://dx.doi.org/10.1186/s12575-016-0043-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915068PMC
June 2016

Practical Considerations for Omics Experiments in Biomedical Sciences.

Curr Pharm Biotechnol 2016 ;17(1):105-14

Proteomics Unit, Department of Biomedicine, University of Bergen, Norway; Jones Liesvei 91, N-5009 Bergen, Norway.

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http://dx.doi.org/10.2174/1389201016666150817095348DOI Listing
March 2016

Pladipus Enables Universal Distributed Computing in Proteomics Bioinformatics.

J Proteome Res 2016 Mar 6;15(3):707-12. Epub 2015 Nov 6.

Proteomics Unit, Department of Biomedicine, University of Bergen , Postboks 7804, N-5020 Bergen, Norway.

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http://dx.doi.org/10.1021/acs.jproteome.5b00850DOI Listing
March 2016

Exploring the potential of public proteomics data.

Proteomics 2016 Jan 15;16(2):214-25. Epub 2015 Dec 15.

Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1002/pmic.201500295DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4738454PMC
January 2016

JSparklines: making tabular proteomics data come alive.

Proteomics 2015 Apr 19;15(8):1428-31. Epub 2015 Jan 19.

Proteomics Unit, Department of Biomedicine, University of Bergen, Norway.

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http://dx.doi.org/10.1002/pmic.201400356DOI Listing
April 2015

Distinct protein signature of hypertension-induced damage in the renal proteome of the two-kidney, one-clip rat model.

J Hypertens 2015 Jan;33(1):126-35

aDepartment of Clinical Medicine bDepartment of Biomedicine, University of Bergen cDepartment of Medicine, Haukeland University Hospital, Bergen dDepartment of Medicine, Haugesund Hospital, Haugesund, Norway eIntegrative Physiology, Department of Medical Cell Biology fAnaesthesiology and Intensive Care Medicine, Department of Surgical Sciences, Uppsala University, Uppsala, Sweden gINSERM U702, Hopital Tenon, Paris, France hSpheromics, Kontiolahti, Finland.

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http://dx.doi.org/10.1097/HJH.0000000000000370DOI Listing
January 2015

Carboxyl-ester lipase maturity-onset diabetes of the young disease protein biomarkers in secretin-stimulated duodenal juice.

J Proteome Res 2015 Jan 4;14(1):521-30. Epub 2014 Nov 4.

KG Jebsen Center for Diabetes Research, Department of Clinical Science, University of Bergen , Jonas Lies Vei 65, Bergen 5021, Norway.

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http://dx.doi.org/10.1021/pr500750zDOI Listing
January 2015

PeptideShaker enables reanalysis of MS-derived proteomics data sets.

Nat Biotechnol 2015 Jan;33(1):22-4

1] Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway. [2] Computational Biology Unit, University of Bergen, Norway.

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http://dx.doi.org/10.1038/nbt.3109DOI Listing
January 2015

Bioinformatics for proteomics: opportunities at the interface between the scientists, their experiments, and the community.

Methods Mol Biol 2014 ;1156:239-48

Proteomics Unit, Department of Biomedicine, University of Bergen, Jonas Liesvei 91, Bergen, 5009, Norway,

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http://dx.doi.org/10.1007/978-1-4939-0685-7_16DOI Listing
December 2014

Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines.

Proteomics 2014 Sep 8;14(17-18):1971-6. Epub 2014 Aug 8.

Proteomics Unit (PROBE), Department of Biomedicine, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1002/pmic.201300448DOI Listing
September 2014

Shedding light on black boxes in protein identification.

Proteomics 2014 May 20;14(9):1001-5. Epub 2014 Mar 20.

Proteomics Unit, Department of Biomedicine, University of Bergen, Norway; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V, Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.201300488DOI Listing
May 2014

DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

J Proteome Res 2014 Feb 7;13(2):1143-6. Epub 2014 Jan 7.

Max Planck Institute for Dynamics of Complex Technical Systems , Sandtorstraße 1, 39106 Magdeburg, Germany.

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http://dx.doi.org/10.1021/pr4008078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3923451PMC
February 2014

Introduction to opportunities and pitfalls in functional mass spectrometry based proteomics.

Biochim Biophys Acta 2014 Jan 9;1844(1 Pt A):12-20. Epub 2013 Jul 9.

Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany; Proteomics Unit (PROBE), Department of Biomedicine, University of Bergen, Bergen, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2013.06.019DOI Listing
January 2014

D-score: a search engine independent MD-score.

Proteomics 2013 Mar 15;13(6):1036-41. Epub 2013 Feb 15.

Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.201200408DOI Listing
March 2013

A complex standard for protein identification, designed by evolution.

J Proteome Res 2012 Oct 13;11(10):5065-71. Epub 2012 Sep 13.

Leibniz-Institut für Analytische Wissenschaften, ISAS, e.V., Dortmund, Germany.

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http://dx.doi.org/10.1021/pr300055qDOI Listing
October 2012

Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI).

J Proteome Res 2012 Oct 30;11(10):5072-80. Epub 2012 Aug 30.

Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany.

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http://dx.doi.org/10.1021/pr300247uDOI Listing
October 2012

Current methods for global proteome identification.

Expert Rev Proteomics 2012 Oct;9(5):519-32

Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany.

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http://dx.doi.org/10.1586/epr.12.51DOI Listing
October 2012

iTRAQ data interpretation.

Methods Mol Biol 2012 ;893:501-9

Leibniz-Institut für Analytische Wissenschaften, ISAS-e.V., Dortmund, Germany.

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http://dx.doi.org/10.1007/978-1-61779-885-6_30DOI Listing
September 2012

Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files.

J Proteome Res 2011 Aug 11;10(8):3840-3. Epub 2011 Jul 11.

Department of Medical Protein Research, VIB, Ghent, Belgium.

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http://dx.doi.org/10.1021/pr2005154DOI Listing
August 2011

Peptide identification quality control.

Proteomics 2011 May 18;11(10):2105-14. Epub 2011 Apr 18.

ISAS-Leibniz Institut für Analytische Wissenschaften-ISAS-eV, Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.201000704DOI Listing
May 2011

iTRAQ protein quantification: a quality-controlled workflow.

Proteomics 2011 Mar 16;11(6):1125-34. Epub 2011 Feb 16.

Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.201000711DOI Listing
March 2011

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

Proteomics 2011 Mar 31;11(5):996-9. Epub 2011 Jan 31.

Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.201000595DOI Listing
March 2011

compomics-utilities: an open-source Java library for computational proteomics.

BMC Bioinformatics 2011 Mar 8;12:70. Epub 2011 Mar 8.

Proteomics Unit, Department of Biomedicine, University of Bergen, Norway.

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http://dx.doi.org/10.1186/1471-2105-12-70DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060842PMC
March 2011

XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.

Proteomics 2010 Apr;10(7):1522-4

Leibniz-Institut für Analytische Wissenschaften - ISAS - eV- Institute for Analytical Sciences, Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.200900759DOI Listing
April 2010

Peptide and protein quantification: a map of the minefield.

Proteomics 2010 Feb;10(4):650-70

ISAS - Institute for Analytical Sciences, Dortmund, Germany.

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http://dx.doi.org/10.1002/pmic.200900481DOI Listing
February 2010