Publications by authors named "Manasa Ramakrishna"

37Publications

Efficient recovery of the RNA-bound proteome and protein-bound transcriptome using phase separation (OOPS).

Nat Protoc 2020 08 10;15(8):2568-2588. Epub 2020 Jul 10.

Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/s41596-020-0344-2DOI Listing
August 2020

Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions.

Commun Biol 2020 01 22;3(1):38. Epub 2020 Jan 22.

Department of Biochemistry, Cambridge Centre for Proteomics, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QR, UK.

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http://dx.doi.org/10.1038/s42003-020-0758-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6976632PMC
January 2020

The cell stress response: extreme times call for post-transcriptional measures.

Wiley Interdiscip Rev RNA 2020 05 21;11(3):e1578. Epub 2019 Nov 21.

MRC Toxicology Unit, University of Cambridge, Leicester, UK.

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http://dx.doi.org/10.1002/wrna.1578DOI Listing
May 2020

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2019 02;566(7742):E1

Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.

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http://www.nature.com/articles/s41586-019-0883-2
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http://dx.doi.org/10.1038/s41586-019-0883-2DOI Listing
February 2019

Identification of the RNA polymerase I-RNA interactome.

Nucleic Acids Res 2018 11;46(20):11002-11013

Medical Research Council Toxicology Unit, University of Cambridge, Lancaster Rd, Leicester LE1 9HN, UK.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237751PMC
November 2018

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature 2016 06 2;534(7605):47-54. Epub 2016 May 2.

Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature17676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910866PMC
June 2016

Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers.

Nat Genet 2015 Mar 2;47(3):257-62. Epub 2015 Feb 2.

1] Program in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada. [2] The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, Canada. [3] Division of Hematology/Oncology, The Hospital for Sick Children, Toronto, Ontario, Canada. [4] Department of Pediatrics, University of Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/ng.3202DOI Listing
March 2015

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.

Science 2014 Aug;345(6196):1251343

Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK.

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http://dx.doi.org/10.1126/science.1251343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380235PMC
August 2014

Signatures of mutational processes in human cancer.

Nature 2013 Aug 14;500(7463):415-21. Epub 2013 Aug 14.

Cancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature12477DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776390PMC
August 2013

Analysis of the mitogen-activated protein kinase kinase 4 (MAP2K4) tumor suppressor gene in ovarian cancer.

BMC Cancer 2011 May 17;11:173. Epub 2011 May 17.

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1186/1471-2407-11-173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3115913PMC
May 2011

Crystallization and preliminary X-ray crystallographic analysis of zebrafish prototype galectin Drgal1-L2.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2010 Dec 26;66(Pt 12):1647-51. Epub 2010 Nov 26.

Institute for Glycomics, Griffith University (Gold Coast Campus), Queensland 4222, Australia.

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http://dx.doi.org/10.1107/S1744309110042272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998375PMC
December 2010

Are there any more ovarian tumor suppressor genes? A new perspective using ultra high-resolution copy number and loss of heterozygosity analysis.

Genes Chromosomes Cancer 2009 Oct;48(10):931-42

VBCRC Cancer Genetics Laboratory, Research Division, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/gcc.20694DOI Listing
October 2009

Mutation and methylation analysis of the chromodomain-helicase-DNA binding 5 gene in ovarian cancer.

Neoplasia 2008 Nov;10(11):1253-8

Victorian Breast Cancer Research Consortium, Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570601PMC
http://dx.doi.org/10.1593/neo.08718DOI Listing
November 2008