Maika Malig

Maika Malig

UNVERIFIED PROFILE

Are you Maika Malig?   Register this Author

Register author
Maika Malig

Maika Malig

Publications by authors named "Maika Malig"

Are you Maika Malig?   Register this Author

35Publications

1305Reads

17Profile Views

Interplay between DNA sequence and negative superhelicity drives R-loop structures.

Authors:
Robert Stolz Shaheen Sulthana Stella R Hartono Maika Malig Craig J Benham Frederic Chedin

Proc Natl Acad Sci U S A 2019 03 8;116(13):6260-6269. Epub 2019 Mar 8.

Department of Molecular and Cellular Biology, University of California, Davis, CA 95616;

View Article

Download full-text PDF

 Source
http://www.pnas.org/lookup/doi/10.1073/pnas.1819476116
Publisher Site
http://dx.doi.org/10.1073/pnas.1819476116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442632PMC
March 2019

Epigenetic origin of evolutionary novel centromeres.

Authors:
Doron Tolomeo Oronzo Capozzi Roscoe R Stanyon Nicoletta Archidiacono Pietro D'Addabbo Claudia R Catacchio Stefania Purgato Giovanni Perini Werner Schempp John Huddleston Maika Malig Evan E Eichler Mariano Rocchi

Sci Rep 2017 02 3;7:41980. Epub 2017 Feb 3.

Department of Biology, University of Bari, Bari, Italy.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/srep41980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5290474PMC
February 2017

The evolution and population diversity of human-specific segmental duplications.

Authors:
Megan Y Dennis Lana Harshman Bradley J Nelson Osnat Penn Stuart Cantsilieris John Huddleston Francesca Antonacci Kelsi Penewit Laura Denman Archana Raja Carl Baker Kenneth Mark Maika Malig Nicolette Janke Claudia Espinoza Holly A F Stessman Xander Nuttle Kendra Hoekzema Tina A Lindsay-Graves Richard K Wilson Evan E Eichler

Nat Ecol Evol 2017 17;1(3):69. Epub 2017 Feb 17.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/s41559-016-0069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450946PMC
February 2017

Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility.

Authors:
Xander Nuttle Giuliana Giannuzzi Michael H Duyzend Joshua G Schraiber Iñigo Narvaiza Peter H Sudmant Osnat Penn Giorgia Chiatante Maika Malig John Huddleston Chris Benner Francesca Camponeschi Simone Ciofi-Baffoni Holly A F Stessman Maria C N Marchetto Laura Denman Lana Harshman Carl Baker Archana Raja Kelsi Penewit Nicolette Janke W Joyce Tang Mario Ventura Lucia Banci Francesca Antonacci Joshua M Akey Chris T Amemiya Fred H Gage Alexandre Reymond Evan E Eichler

Nature 2016 08 3;536(7615):205-9. Epub 2016 Aug 3.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/nature19075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988886PMC
August 2016

Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies.

Authors:
Nima Rafati Lisa S Andersson Sofia Mikko Chungang Feng Terje Raudsepp Jessica Pettersson Jan Janecka Ove Wattle Adam Ameur Gunilla Thyreen John Eberth John Huddleston Maika Malig Ernest Bailey Evan E Eichler Göran Dalin Bhanu Chowdary Leif Andersson Gabriella Lindgren Carl-Johan Rubin

G3 (Bethesda) 2016 07 7;6(7):2213-23. Epub 2016 Jul 7.

Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Sweden 751 23

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1534/g3.116.029645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4938674PMC
July 2016

Long-read sequence assembly of the gorilla genome.

Authors:
David Gordon John Huddleston Mark J P Chaisson Christopher M Hill Zev N Kronenberg Katherine M Munson Maika Malig Archana Raja Ian Fiddes LaDeana W Hillier Christopher Dunn Carl Baker Joel Armstrong Mark Diekhans Benedict Paten Jay Shendure Richard K Wilson David Haussler Chen-Shan Chin Evan E Eichler

Science 2016 Apr;352(6281):aae0344

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1126/science.aae0344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920363PMC
April 2016

Bovine NK-lysin: Copy number variation and functional diversification.

Authors:
Junfeng Chen John Huddleston Reuben M Buckley Maika Malig Sara D Lawhon Loren C Skow Mi Ok Lee Evan E Eichler Leif Andersson James E Womack

Proc Natl Acad Sci U S A 2015 Dec 14;112(52):E7223-9. Epub 2015 Dec 14.

Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1073/pnas.1519374113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702975PMC
December 2015

An integrated map of structural variation in 2,504 human genomes.

Authors:
Peter H Sudmant Tobias Rausch Eugene J Gardner Robert E Handsaker Alexej Abyzov John Huddleston Yan Zhang Kai Ye Goo Jun Markus Hsi-Yang Fritz Miriam K Konkel Ankit Malhotra Adrian M Stütz Xinghua Shi Francesco Paolo Casale Jieming Chen Fereydoun Hormozdiari Gargi Dayama Ken Chen Maika Malig Mark J P Chaisson Klaudia Walter Sascha Meiers Seva Kashin Erik Garrison Adam Auton Hugo Y K Lam Xinmeng Jasmine Mu Can Alkan Danny Antaki Taejeong Bae Eliza Cerveira Peter Chines Zechen Chong Laura Clarke Elif Dal Li Ding Sarah Emery Xian Fan Madhusudan Gujral Fatma Kahveci Jeffrey M Kidd Yu Kong Eric-Wubbo Lameijer Shane McCarthy Paul Flicek Richard A Gibbs Gabor Marth Christopher E Mason Androniki Menelaou Donna M Muzny Bradley J Nelson Amina Noor Nicholas F Parrish Matthew Pendleton Andrew Quitadamo Benjamin Raeder Eric E Schadt Mallory Romanovitch Andreas Schlattl Robert Sebra Andrey A Shabalin Andreas Untergasser Jerilyn A Walker Min Wang Fuli Yu Chengsheng Zhang Jing Zhang Xiangqun Zheng-Bradley Wanding Zhou Thomas Zichner Jonathan Sebat Mark A Batzer Steven A McCarroll Ryan E Mills Mark B Gerstein Ali Bashir Oliver Stegle Scott E Devine Charles Lee Evan E Eichler Jan O Korbel

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity.

Authors:
Corey T Watson Karyn Meltz Steinberg Tina A Graves Rene L Warren Maika Malig Jacqueline Schein Richard K Wilson Robert A Holt Evan E Eichler Felix Breden

Genes Immun 2015 Jan-Feb;16(1):24-34. Epub 2014 Oct 23.

Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/gene.2014.56DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304971PMC
August 2015

Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma.

Authors:
Catarina D Campbell Kiana Mohajeri Maika Malig Fereydoun Hormozdiari Benjamin Nelson Gaixin Du Kristen M Patterson Celeste Eng Dara G Torgerson Donglei Hu Catherine Herman Jessica X Chong Arthur Ko Brian J O'Roak Niklas Krumm Laura Vives Choli Lee Lindsey A Roth William Rodriguez-Cintron Jose Rodriguez-Santana Emerita Brigino-Buenaventura Adam Davis Kelley Meade Michael A LeNoir Shannon Thyne Daniel J Jackson James E Gern Robert F Lemanske Jay Shendure Mark Abney Esteban G Burchard Carole Ober Evan E Eichler

PLoS One 2014 12;9(8):e104396. Epub 2014 Aug 12.

Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America; Howard Hughes Medical Institute, Seattle, Washington, United States of America.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0104396PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4130548PMC
April 2015

Resolving the complexity of the human genome using single-molecule sequencing.

Authors:
Mark J P Chaisson John Huddleston Megan Y Dennis Peter H Sudmant Maika Malig Fereydoun Hormozdiari Francesca Antonacci Urvashi Surti Richard Sandstrom Matthew Boitano Jane M Landolin John A Stamatoyannopoulos Michael W Hunkapiller Jonas Korlach Evan E Eichler

Nature 2015 Jan 10;517(7536):608-11. Epub 2014 Nov 10.

1] Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

 Source
https://www.nature.com/articles/nature13907.pdf
Web Search
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317254/
Web Search
http://www.nature.com/articles/nature13907
Publisher Site
http://dx.doi.org/10.1038/nature13907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317254PMC
January 2015

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.

Authors:
Francesca Antonacci Megan Y Dennis John Huddleston Peter H Sudmant Karyn Meltz Steinberg Jill A Rosenfeld Mattia Miroballo Tina A Graves Laura Vives Maika Malig Laura Denman Archana Raja Andrew Stuart Joyce Tang Brenton Munson Lisa G Shaffer Chris T Amemiya Richard K Wilson Evan E Eichler

Nat Genet 2014 Dec 19;46(12):1293-302. Epub 2014 Oct 19.

1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ng.3120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4244265PMC
December 2014

Reconstructing complex regions of genomes using long-read sequencing technology.

Authors:
John Huddleston Swati Ranade Maika Malig Francesca Antonacci Mark Chaisson Lawrence Hon Peter H Sudmant Tina A Graves Can Alkan Megan Y Dennis Richard K Wilson Stephen W Turner Jonas Korlach Evan E Eichler

Genome Res 2014 Apr 13;24(4):688-96. Epub 2014 Jan 13.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA;

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.168450.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3975067PMC
April 2014

Hominoid fission of chromosome 14/15 and the role of segmental duplications.

Authors:
Giuliana Giannuzzi Michele Pazienza John Huddleston Francesca Antonacci Maika Malig Laura Vives Evan E Eichler Mario Ventura

Genome Res 2013 Nov 27;23(11):1763-73. Epub 2013 Sep 27.

Dipartimento di Biologia, Università degli Studi di Bari "Aldo Moro," Bari 70125, Italy;

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.156240.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814877PMC
November 2013

Evolution and diversity of copy number variation in the great ape lineage.

Authors:
Peter H Sudmant John Huddleston Claudia R Catacchio Maika Malig Ladeana W Hillier Carl Baker Kiana Mohajeri Ivanela Kondova Ronald E Bontrop Stephan Persengiev Francesca Antonacci Mario Ventura Javier Prado-Martinez Tomas Marques-Bonet Evan E Eichler

Genome Res 2013 Sep 3;23(9):1373-82. Epub 2013 Jul 3.

Department of Genome Sciences, University of Washington, Seattle, Washington 98105, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.158543.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3759715PMC
September 2013

Rates and patterns of great ape retrotransposition.

Authors:
Fereydoun Hormozdiari Miriam K Konkel Javier Prado-Martinez Giorgia Chiatante Irene Hernando Herraez Jerilyn A Walker Benjamin Nelson Can Alkan Peter H Sudmant John Huddleston Claudia R Catacchio Arthur Ko Maika Malig Carl Baker Tomas Marques-Bonet Mario Ventura Mark A Batzer Evan E Eichler

Proc Natl Acad Sci U S A 2013 Aug 24;110(33):13457-62. Epub 2013 Jul 24.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

 Source
http://www.pnas.org/content/110/33/13457.full.pdf
Web Search
http://www.pnas.org/cgi/doi/10.1073/pnas.1310914110
Publisher Site
http://dx.doi.org/10.1073/pnas.1310914110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746892PMC
August 2013

Great ape genetic diversity and population history.

Authors:
Javier Prado-Martinez Peter H Sudmant Jeffrey M Kidd Heng Li Joanna L Kelley Belen Lorente-Galdos Krishna R Veeramah August E Woerner Timothy D O'Connor Gabriel Santpere Alexander Cagan Christoph Theunert Ferran Casals Hafid Laayouni Kasper Munch Asger Hobolth Anders E Halager Maika Malig Jessica Hernandez-Rodriguez Irene Hernando-Herraez Kay Prüfer Marc Pybus Laurel Johnstone Michael Lachmann Can Alkan Dorina Twigg Natalia Petit Carl Baker Fereydoun Hormozdiari Marcos Fernandez-Callejo Marc Dabad Michael L Wilson Laurie Stevison Cristina Camprubí Tiago Carvalho Aurora Ruiz-Herrera Laura Vives Marta Mele Teresa Abello Ivanela Kondova Ronald E Bontrop Anne Pusey Felix Lankester John A Kiyang Richard A Bergl Elizabeth Lonsdorf Simon Myers Mario Ventura Pascal Gagneux David Comas Hans Siegismund Julie Blanc Lidia Agueda-Calpena Marta Gut Lucinda Fulton Sarah A Tishkoff James C Mullikin Richard K Wilson Ivo G Gut Mary Katherine Gonder Oliver A Ryder Beatrice H Hahn Arcadi Navarro Joshua M Akey Jaume Bertranpetit David Reich Thomas Mailund Mikkel H Schierup Christina Hvilsom Aida M Andrés Jeffrey D Wall Carlos D Bustamante Michael F Hammer Evan E Eichler Tomas Marques-Bonet

Nature 2013 Jul 3;499(7459):471-5. Epub 2013 Jul 3.

Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/nature12228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3822165PMC
July 2013

Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation.

Authors:
Corey T Watson Karyn M Steinberg John Huddleston Rene L Warren Maika Malig Jacqueline Schein A Jeremy Willsey Jeffrey B Joy Jamie K Scott Tina A Graves Richard K Wilson Robert A Holt Evan E Eichler Felix Breden

Am J Hum Genet 2013 Apr 28;92(4):530-46. Epub 2013 Mar 28.

Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.ajhg.2013.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617388PMC
April 2013

Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.

Authors:
Santhosh Girirajan Megan Y Dennis Carl Baker Maika Malig Bradley P Coe Catarina D Campbell Kenneth Mark Tiffany H Vu Can Alkan Ze Cheng Leslie G Biesecker Raphael Bernier Evan E Eichler

Am J Hum Genet 2013 Feb 31;92(2):221-37. Epub 2013 Jan 31.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.ajhg.2012.12.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3567267PMC
February 2013

Evolutionary dynamism of the primate LRRC37 gene family.

Authors:
Giuliana Giannuzzi Priscillia Siswara Maika Malig Tomas Marques-Bonet James C Mullikin Mario Ventura Evan E Eichler

Genome Res 2013 Jan 11;23(1):46-59. Epub 2012 Oct 11.

Dipartimento di Biologia, Università degli Studi di Bari Aldo Moro, Bari 70126, Italy.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.138842.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530683PMC
January 2013

Estimating the human mutation rate using autozygosity in a founder population.

Authors:
Catarina D Campbell Jessica X Chong Maika Malig Arthur Ko Beth L Dumont Lide Han Laura Vives Brian J O'Roak Peter H Sudmant Jay Shendure Mark Abney Carole Ober Evan E Eichler

Nat Genet 2012 Nov 23;44(11):1277-81. Epub 2012 Sep 23.

Department of Genome Sciences, University of Washington, Seattle, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ng.2418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483378PMC
November 2012

Copy number variation detection and genotyping from exome sequence data.

Authors:
Niklas Krumm Peter H Sudmant Arthur Ko Brian J O'Roak Maika Malig Bradley P Coe Aaron R Quinlan Deborah A Nickerson Evan E Eichler

Genome Res 2012 Aug 14;22(8):1525-32. Epub 2012 May 14.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.138115.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409265PMC
August 2012

Structural diversity and African origin of the 17q21.31 inversion polymorphism.

Authors:
Karyn Meltz Steinberg Francesca Antonacci Peter H Sudmant Jeffrey M Kidd Catarina D Campbell Laura Vives Maika Malig Laura Scheinfeldt William Beggs Muntaser Ibrahim Godfrey Lema Thomas B Nyambo Sabah A Omar Jean-Marie Bodo Alain Froment Michael P Donnelly Kenneth K Kidd Sarah A Tishkoff Evan E Eichler

Nat Genet 2012 Jul 1;44(8):872-80. Epub 2012 Jul 1.

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ng.2335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3408829PMC
July 2012

Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.

Authors:
Megan Y Dennis Xander Nuttle Peter H Sudmant Francesca Antonacci Tina A Graves Mikhail Nefedov Jill A Rosenfeld Saba Sajjadian Maika Malig Holland Kotkiewicz Cynthia J Curry Susan Shafer Lisa G Shaffer Pieter J de Jong Richard K Wilson Evan E Eichler

Cell 2012 May 3;149(4):912-22. Epub 2012 May 3.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.cell.2012.03.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3365555PMC
May 2012

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.

Authors:
Brian J O'Roak Laura Vives Santhosh Girirajan Emre Karakoc Niklas Krumm Bradley P Coe Roie Levy Arthur Ko Choli Lee Joshua D Smith Emily H Turner Ian B Stanaway Benjamin Vernot Maika Malig Carl Baker Beau Reilly Joshua M Akey Elhanan Borenstein Mark J Rieder Deborah A Nickerson Raphael Bernier Jay Shendure Evan E Eichler

Nature 2012 Apr 4;485(7397):246-50. Epub 2012 Apr 4.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/nature10989DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3350576PMC
April 2012

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.

Authors:
Mario Ventura Claudia R Catacchio Can Alkan Tomas Marques-Bonet Saba Sajjadian Tina A Graves Fereydoun Hormozdiari Arcadi Navarro Maika Malig Carl Baker Choli Lee Emily H Turner Lin Chen Jeffrey M Kidd Nicoletta Archidiacono Jay Shendure Richard K Wilson Evan E Eichler

Genome Res 2011 Oct 17;21(10):1640-9. Epub 2011 Jun 17.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.124461.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3202281PMC
October 2011

Alu repeat discovery and characterization within human genomes.

Authors:
Fereydoun Hormozdiari Can Alkan Mario Ventura Iman Hajirasouliha Maika Malig Faraz Hach Deniz Yorukoglu Phuong Dao Marzieh Bakhshi S Cenk Sahinalp Evan E Eichler

Genome Res 2011 Jun 3;21(6):840-9. Epub 2010 Dec 3.

School of Computing Science, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1101/gr.115956.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3106317PMC
June 2011

Population-genetic properties of differentiated human copy-number polymorphisms.

Authors:
Catarina D Campbell Nick Sampas Anya Tsalenko Peter H Sudmant Jeffrey M Kidd Maika Malig Tiffany H Vu Laura Vives Peter Tsang Laurakay Bruhn Evan E Eichler

Am J Hum Genet 2011 Mar;88(3):317-32

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.ajhg.2011.02.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059424PMC
March 2011

A human genome structural variation sequencing resource reveals insights into mutational mechanisms.

Authors:
Jeffrey M Kidd Tina Graves Tera L Newman Robert Fulton Hillary S Hayden Maika Malig Joelle Kallicki Rajinder Kaul Richard K Wilson Evan E Eichler

Cell 2010 Nov;143(5):837-47

Department of Genome Sciences, University of Washington School of Medicine, Seattle, 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.cell.2010.10.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3026629PMC
November 2010

Diversity of human copy number variation and multicopy genes.

Authors:
Peter H Sudmant Jacob O Kitzman Francesca Antonacci Can Alkan Maika Malig Anya Tsalenko Nick Sampas Laurakay Bruhn Jay Shendure Evan E Eichler

Science 2010 Oct;330(6004):641-6

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.

View Article

Download full-text PDF

 Source
http://www.sciencemag.org/lookup/doi/10.1126/science.1197005
Publisher Site
http://dx.doi.org/10.1126/science.1197005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020103PMC
October 2010

A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk.

Authors:
Francesca Antonacci Jeffrey M Kidd Tomas Marques-Bonet Brian Teague Mario Ventura Santhosh Girirajan Can Alkan Catarina D Campbell Laura Vives Maika Malig Jill A Rosenfeld Blake C Ballif Lisa G Shaffer Tina A Graves Richard K Wilson David C Schwartz Evan E Eichler

Nat Genet 2010 Sep 22;42(9):745-50. Epub 2010 Aug 22.

Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ng.643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2930074PMC
September 2010

LINE-1 retrotransposition activity in human genomes.

Authors:
Christine R Beck Pamela Collier Catriona Macfarlane Maika Malig Jeffrey M Kidd Evan E Eichler Richard M Badge John V Moran

Cell 2010 Jun;141(7):1159-70

Department of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.cell.2010.05.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013285PMC
June 2010

Characterization of missing human genome sequences and copy-number polymorphic insertions.

Authors:
Jeffrey M Kidd Nick Sampas Francesca Antonacci Tina Graves Robert Fulton Hillary S Hayden Can Alkan Maika Malig Mario Ventura Giuliana Giannuzzi Joelle Kallicki Paige Anderson Anya Tsalenko N Alice Yamada Peter Tsang Rajinder Kaul Richard K Wilson Laurakay Bruhn Evan E Eichler

Nat Methods 2010 May;7(5):365-71

Department of Genome Sciences, University of Washington School of Medicine, Seattle, USA.

View Article

Download full-text PDF

 Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875995PMC
May 2010

Personalized copy number and segmental duplication maps using next-generation sequencing.

Authors:
Can Alkan Jeffrey M Kidd Tomas Marques-Bonet Gozde Aksay Francesca Antonacci Fereydoun Hormozdiari Jacob O Kitzman Carl Baker Maika Malig Onur Mutlu S Cenk Sahinalp Richard A Gibbs Evan E Eichler

Nat Genet 2009 Oct 30;41(10):1061-7. Epub 2009 Aug 30.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ng.437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875196PMC
October 2009

Mapping and sequencing of structural variation from eight human genomes.

Authors:
Jeffrey M Kidd Gregory M Cooper William F Donahue Hillary S Hayden Nick Sampas Tina Graves Nancy Hansen Brian Teague Can Alkan Francesca Antonacci Eric Haugen Troy Zerr N Alice Yamada Peter Tsang Tera L Newman Eray Tüzün Ze Cheng Heather M Ebling Nadeem Tusneem Robert David Will Gillett Karen A Phelps Molly Weaver David Saranga Adrianne Brand Wei Tao Erik Gustafson Kevin McKernan Lin Chen Maika Malig Joshua D Smith Joshua M Korn Steven A McCarroll David A Altshuler Daniel A Peiffer Michael Dorschner John Stamatoyannopoulos David Schwartz Deborah A Nickerson James C Mullikin Richard K Wilson Laurakay Bruhn Maynard V Olson Rajinder Kaul Douglas R Smith Evan E Eichler

Nature 2008 May;453(7191):56-64

Department of Genome Sciences and Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/nature06862DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2424287PMC
May 2008