Lyle D Burgoon

Lyle D Burgoon

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Lyle D Burgoon

Lyle D Burgoon

Publications by authors named "Lyle D Burgoon"

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Using In Vitro High-Throughput Screening Data for Predicting Benzo[k]Fluoranthene Human Health Hazards.

Risk Anal 2017 02 18;37(2):280-290. Epub 2016 Apr 18.

Oak Ridge Institute for Science and Education assigned to the U.S. Environmental Protection Agency, National Center for Environmental Assessment, Research Triangle Park, NC, USA.

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http://dx.doi.org/10.1111/risa.12613DOI Listing
February 2017

A decision analysis framework for estimating the potential hazards for drinking water resources of chemicals used in hydraulic fracturing fluids.

Sci Total Environ 2017 Jan 22;574:1544-1558. Epub 2016 Sep 22.

United States Environmental Protection Agency, Office of Research and Development, National Center for Environmental Assessment, Research Triangle Park, NC, United States. Electronic address:

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http://dx.doi.org/10.1016/j.scitotenv.2016.08.167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5776703PMC
January 2017

Response to Cohen et al. (2016) regarding response to Druwe and Burgoon.

Arch Toxicol 2016 12 7;90(12):3131-3132. Epub 2016 Oct 7.

U.S. Army Engineer Research and Development Center, Research Triangle Park, NC, USA.

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http://dx.doi.org/10.1007/s00204-016-1858-9DOI Listing
December 2016

Estimating the Potential Toxicity of Chemicals Associated with Hydraulic Fracturing Operations Using Quantitative Structure-Activity Relationship Modeling.

Environ Sci Technol 2016 07 29;50(14):7732-42. Epub 2016 Jun 29.

United States Environmental Protection Agency, Office of Research and Development, National Center for Environmental Assessment, Research Triangle Park 27711, North Carolina, United States.

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http://dx.doi.org/10.1021/acs.est.5b05327DOI Listing
July 2016

Loss of Hif-2α Rescues the Hif-1α Deletion Phenotype of Neonatal Respiratory Distress In Mice.

PLoS One 2015 30;10(9):e0139270. Epub 2015 Sep 30.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, United States of America; Center for Integrative Toxicology, Michigan State University, East Lansing, Michigan, United States of America; Center for Mitochondrial Science and Medicine, Michigan State University, East Lansing, Michigan, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0139270PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589293PMC
June 2016

A Market-Basket Approach to Predict the Acute Aquatic Toxicity of Munitions and Energetic Materials.

Authors:
Lyle D Burgoon

Bull Environ Contam Toxicol 2016 Jun 18;96(6):779-83. Epub 2016 Apr 18.

US Army Engineer Research and Development Center, 3909 Halls Ferry Road, Vicksburg, MS, 39180, USA.

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http://dx.doi.org/10.1007/s00128-016-1800-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4882363PMC
June 2016

Overview of Chronic Oral Toxicity Values for Chemicals Present in Hydraulic Fracturing Fluids, Flowback, and Produced Waters.

Environ Sci Technol 2016 05 22;50(9):4788-97. Epub 2016 Apr 22.

Oak Ridge Institute for Science and Education (ORISE) Research Participation Program and §Office of Research and Development, United States Environmental Protection Agency, National Center for Environmental Assessment , Research Triangle Park, North Carolina 27711, United States.

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http://dx.doi.org/10.1021/acs.est.5b04645DOI Listing
May 2016

Can data science inform environmental justice and community risk screening for type 2 diabetes?

PLoS One 2015 14;10(4):e0121855. Epub 2015 Apr 14.

National Center for Environmental Assessment, Office of Research and Development, United States Environmental Protection Agency, Research Triangle Park, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0121855PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4396977PMC
April 2016

Systematic Omics Analysis Review (SOAR) tool to support risk assessment.

PLoS One 2014 22;9(12):e110379. Epub 2014 Dec 22.

National Center for Environmental Assessment, Office of Research and Development, United States Environmental Protection Agency, Research Triangle Park, NC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0110379PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273947PMC
August 2015

A framework for the next generation of risk science.

Environ Health Perspect 2014 Aug 11;122(8):796-805. Epub 2014 Apr 11.

McLaughlin Centre for Population Health Risk Assessment, University of Ottawa, Ottawa, Ontario, Canada.

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http://dx.doi.org/10.1289/ehp.1307260DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123023PMC
August 2014

Burst and principal components analyses of MEA data for 16 chemicals describe at least three effects classes.

Neurotoxicology 2014 Jan 8;40:75-85. Epub 2013 Dec 8.

NHEERL, ORD, U.S. Environmental Protection Agency, Research Triangle Park, NC, United States. Electronic address:

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http://dx.doi.org/10.1016/j.neuro.2013.11.008DOI Listing
January 2014

Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action.

Aquat Toxicol 2013 Nov 19;144-145:141-54. Epub 2013 Sep 19.

U.S. Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Mid-Continent Ecology Division, 6201 Congdon Boulevard, Duluth, MN 55804, USA. Electronic address:

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http://dx.doi.org/10.1016/j.aquatox.2013.09.004DOI Listing
November 2013

Plastids are major regulators of light signaling in Arabidopsis.

Plant Physiol 2012 May 1;159(1):366-90. Epub 2012 Mar 1.

Michigan State University-Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1104/pp.112.193599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3375971PMC
May 2012

Comparative metabolomic and genomic analyses of TCDD-elicited metabolic disruption in mouse and rat liver.

Toxicol Sci 2012 Jan 29;125(1):41-55. Epub 2011 Sep 29.

Department of Biochemistry and Molecular Biology, Center for Integrative Toxicology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1093/toxsci/kfr262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3243745PMC
January 2012

MIPHENO: data normalization for high throughput metabolite analysis.

BMC Bioinformatics 2012 Jan 13;13:10. Epub 2012 Jan 13.

Quantitative Biology Program, Michigan State University, East Lansing, MI, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-13-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278354PMC
January 2012

Genome-wide computational analysis of dioxin response element location and distribution in the human, mouse, and rat genomes.

Chem Res Toxicol 2011 Apr 17;24(4):494-504. Epub 2011 Mar 17.

Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1021/tx100328rDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4038167PMC
April 2011

Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells.

BMC Genomics 2011 Apr 15;12:193. Epub 2011 Apr 15.

Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1186/1471-2164-12-193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089798PMC
April 2011

Hypoxia-inducible factor-1α regulates the expression of genes in hypoxic hepatic stellate cells important for collagen deposition and angiogenesis.

Liver Int 2011 Feb 29;31(2):230-44. Epub 2010 Sep 29.

Department of Pharmacology, Toxicology, and Experimental Therapeutics, University of Kansas Medical Center, Kansas City, KS 66160, USA.

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http://dx.doi.org/10.1111/j.1478-3231.2010.02347.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3099214PMC
February 2011

Effects of tamoxifen and ethynylestradiol cotreatment on uterine gene expression in immature, ovariectomized mice.

J Mol Endocrinol 2010 Sep 13;45(3):161-73. Epub 2010 Jul 13.

Department of Biochemistry and Molecular Biology, Michigan State University, 501 Biochemistry Building, Wilson Road, East Lansing, Michigan 48824-1319, USA.

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http://dx.doi.org/10.1677/JME-09-0158DOI Listing
September 2010

Effects of TCDD on the expression of nuclear encoded mitochondrial genes.

Toxicol Appl Pharmacol 2010 Jul 24;246(1-2):58-65. Epub 2010 Apr 24.

Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1016/j.taap.2010.04.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4030424PMC
July 2010

Oxidative stress is important in the pathogenesis of liver injury induced by sulindac and lipopolysaccharide cotreatment.

Toxicology 2010 Jun 3;272(1-3):32-8. Epub 2010 Apr 3.

Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, United States.

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http://dx.doi.org/10.1016/j.tox.2010.03.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2898510PMC
June 2010

Automated dose-response analysis of the relative hepatic gene expression potency of TCDF in C57BL/6 mice.

Toxicol Sci 2009 Nov 12;112(1):221-8. Epub 2009 Aug 12.

Department of Biochemistry & Molecular Biology, Michigan State University, 501 Biochemistry Building, Wilson Road, East Lansing, MI 48824-1319, USA.

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https://academic.oup.com/toxsci/article-lookup/doi/10.1093/t
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http://dx.doi.org/10.1093/toxsci/kfp180DOI Listing
November 2009

Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells.

Toxicol Sci 2009 Nov 14;112(1):229-44. Epub 2009 Aug 14.

Department of Biochemistry & Molecular Biology, 501 Biochemistry Building, Wilson Road, East Lansing, MI 48824-1319, USA.

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http://dx.doi.org/10.1093/toxsci/kfp189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2769060PMC
November 2009

Phenobarbital elicits unique, early changes in the expression of hepatic genes that affect critical pathways in tumor-prone B6C3F1 mice.

Toxicol Sci 2009 Jun 6;109(2):193-205. Epub 2009 Mar 6.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.

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https://academic.oup.com/toxsci/article-lookup/doi/10.1093/t
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http://dx.doi.org/10.1093/toxsci/kfp050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683922PMC
June 2009

Tamoxifen-elicited uterotrophy: cross-species and cross-ligand analysis of the gene expression program.

BMC Med Genomics 2009 Apr 28;2:19. Epub 2009 Apr 28.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA.

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http://dx.doi.org/10.1186/1755-8794-2-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683873PMC
April 2009

Promoter analysis of TCDD-inducible genes in a thymic epithelial cell line indicates the potential for cell-specific transcription factor crosstalk in the AhR response.

Toxicol Appl Pharmacol 2008 Oct 19;232(2):268-79. Epub 2008 Jul 19.

Institute for Environmental Medical Research (IUF), 40225 Düsseldorf, Germany.

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http://dx.doi.org/10.1016/j.taap.2008.07.009DOI Listing
October 2008

Species-specific regulation of PXR/CAR/ER-target genes in the mouse and rat liver elicited by o, p'-DDT.

BMC Genomics 2008 Oct 16;9:487. Epub 2008 Oct 16.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan, USA.

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http://dx.doi.org/10.1186/1471-2164-9-487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577663PMC
October 2008

Automated quantitative dose-response modeling and point of departure determination for large toxicogenomic and high-throughput screening data sets.

Toxicol Sci 2008 Aug 25;104(2):412-8. Epub 2008 Apr 25.

Toxicogenomic Informatics and Solutions, LLC, Lansing, Michigan 48909, USA.

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http://dx.doi.org/10.1093/toxsci/kfn083DOI Listing
August 2008

Bioinformatics: databasing and gene annotation.

Methods Mol Biol 2008 ;460:145-57

Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, Michigan, USA.

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http://dx.doi.org/10.1007/978-1-60327-048-9_7DOI Listing
August 2008

Comparative temporal toxicogenomic analysis of TCDD- and TCDF-mediated hepatic effects in immature female C57BL/6 mice.

Toxicol Sci 2008 Jun 14;103(2):285-97. Epub 2008 Mar 14.

Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1093/toxsci/kfn053DOI Listing
June 2008

Comparative toxicogenomic examination of the hepatic effects of PCB126 and TCDD in immature, ovariectomized C57BL/6 mice.

Toxicol Sci 2008 Mar 27;102(1):61-75. Epub 2007 Nov 27.

Department of Biochemistry & Molecular Biology, Center for Integrative Toxicology, Michigan State University, East Lansing 48824-1319, USA.

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http://dx.doi.org/10.1093/toxsci/kfm289DOI Listing
March 2008

o,p'-DDT elicits PXR/CAR-, not ER-, mediated responses in the immature ovariectomized rat liver.

Toxicol Sci 2008 Feb 5;101(2):350-63. Epub 2007 Nov 5.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1093/toxsci/kfm275DOI Listing
February 2008

Inhibition of estrogen-mediated uterine gene expression responses by dioxin.

Mol Pharmacol 2008 Jan 17;73(1):82-93. Epub 2007 Oct 17.

Michigan State University, Department of Biochemistry and Molecular Biology, 224 Biochemistry Building, Wilson Road, East Lansing, MI 48824-1319, USA.

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http://dx.doi.org/10.1124/mol.107.040451DOI Listing
January 2008

Clearing the standards landscape: the semantics of terminology and their impact on toxicogenomics.

Authors:
Lyle D Burgoon

Toxicol Sci 2007 Oct 5;99(2):403-12. Epub 2007 May 5.

Toxicogenomic Informatics and Solutions, LLC, P.O. Box 27482, Lansing, Michigan 48909, USA.

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https://academic.oup.com/toxsci/article-lookup/doi/10.1093/t
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http://dx.doi.org/10.1093/toxsci/kfm108DOI Listing
October 2007

dbZach toxicogenomic information management system.

Pharmacogenomics 2007 Mar;8(3):287-91

Michigan State University, Toxicogenomic Informatics and Solutions, LLC and Department of Biochemistry and Molecular Biology, National Food Safety and Toxicology Center, Center for Integrative Toxicology, MI, USA.

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http://dx.doi.org/10.2217/14622416.8.3.287DOI Listing
March 2007

Comparative toxicogenomic analysis of the hepatotoxic effects of TCDD in Sprague Dawley rats and C57BL/6 mice.

Toxicol Sci 2006 Dec 7;94(2):398-416. Epub 2006 Sep 7.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1093/toxsci/kfl100DOI Listing
December 2006

The need for standards, not guidelines, in biological data reporting and sharing.

Authors:
Lyle D Burgoon

Nat Biotechnol 2006 Nov;24(11):1369-73

Toxicogenomic Informatics and Solutions, LLC, PO Box 27482, Lansing, Michigan 48909, USA.

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http://dx.doi.org/10.1038/nbt1106-1369DOI Listing
November 2006

Identification and characterization of genes susceptible to transcriptional cross-talk between the hypoxia and dioxin signaling cascades.

Chem Res Toxicol 2006 Oct;19(10):1284-93

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1021/tx060068dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152583PMC
October 2006

Dioxin induces an estrogen-like, estrogen receptor-dependent gene expression response in the murine uterus.

Mol Pharmacol 2006 May 8;69(5):1599-606. Epub 2006 Feb 8.

Michigan State University, Department of Biochemistry and Molecular Biology, 501 Biochemistry Building, Wilson Road, East Lansing, MI 48824-1319, USA.

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http://molpharm.aspetjournals.org/cgi/doi/10.1124/mol.105.01
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http://dx.doi.org/10.1124/mol.105.019638DOI Listing
May 2006

dbZach: A MIAME-compliant toxicogenomic supportive relational database.

Toxicol Sci 2006 Apr 10;90(2):558-68. Epub 2006 Jan 10.

Department of Pharmacology & Toxicology, National Food Safety & Toxicology Center, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1093/toxsci/kfj097DOI Listing
April 2006

In vivo-in vitro toxicogenomic comparison of TCDD-elicited gene expression in Hepa1c1c7 mouse hepatoma cells and C57BL/6 hepatic tissue.

BMC Genomics 2006 Apr 12;7:80. Epub 2006 Apr 12.

Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing MI 48824-1319, USA.

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http://dx.doi.org/10.1186/1471-2164-7-80DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1513214PMC
April 2006

A cross-species analysis of the rodent uterotrophic program: elucidation of conserved responses and targets of estrogen signaling.

Physiol Genomics 2005 Nov 20;23(3):327-42. Epub 2005 Sep 20.

Department of Biochemistry, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00175.2005DOI Listing
November 2005

Temporal and dose-dependent hepatic gene expression patterns in mice provide new insights into TCDD-Mediated hepatotoxicity.

Toxicol Sci 2005 Jun 30;85(2):1048-63. Epub 2005 Mar 30.

Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing Michigan 48824-1319, USA.

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http://dx.doi.org/10.1093/toxsci/kfi162DOI Listing
June 2005

Gene expression analysis points to hemostasis in livers of rats cotreated with lipopolysaccharide and ranitidine.

Toxicol Sci 2004 Jul 14;80(1):203-13. Epub 2004 Apr 14.

Department of Pharmacology and Toxicology, National Food Safety and Toxicology Center, Center for Integrative Toxicology, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1093/toxsci/kfh146DOI Listing
July 2004