Publications by authors named "Lukasz Huminiecki"

31Publications

A Contemporary Message from Mendel's Logical Empiricism.

Bioessays 2020 Aug 9:e2000120. Epub 2020 Aug 9.

Evolutionary, Computational, and Statistical Genetics, The Department of Molecular Biology, Instytut Genetyki i Hodowli Zwierząt Polskiej Akademii Nauk, ul. Postępu 36A, Jastrzębiec, Magdalenka, 05-552, Poland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bies.202000120DOI Listing
August 2020

Etiology of atherosclerosis informs choice of animal models and tissues for initial functional genomic studies of resveratrol.

Pharmacol Res 2020 06 14;156:104598. Epub 2020 Feb 14.

The Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Postępu 36A, Jastrzębiec, 05-552 Magdalenka, Poland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.phrs.2019.104598DOI Listing
June 2020

Can We Predict Gene Expression by Understanding Proximal Promoter Architecture?

Trends Biotechnol 2020 Apr 28;38(4):463. Epub 2019 Dec 28.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tibtech.2019.12.003DOI Listing
April 2020

Magic roundabout is an endothelial-specific ohnolog of ROBO1 which neo-functionalized to an essential new role in angiogenesis.

PLoS One 2019 25;14(2):e0208952. Epub 2019 Feb 25.

Instytut Genetyki i Hodowli Zwierząt Polskiej Akademii Nauk, Jastrzębiec, Magdalenka, Poland.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0208952PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6389290PMC
October 2019

Modelling of the breadth of expression from promoter architectures identifies pro-housekeeping transcription factors.

PLoS One 2018 21;13(6):e0198961. Epub 2018 Jun 21.

Instytut Genetyki i Hodowli Zwierząt Polskiej Akademii Nauk, Jastrzębiec, Magdalenka, Poland.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0198961PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013173PMC
December 2018

Vascular smooth muscle cell proliferation as a therapeutic target. Part 1: molecular targets and pathways.

Biotechnol Adv 2018 11 21;36(6):1586-1607. Epub 2018 Apr 21.

Department of Molecular Biology, Institute of Genetics and Animal Breeding of the Polish Academy of Sciences, ul. Postepu 36A, Jastrzębiec, 05-552 Magdalenka, Poland; Department of Pharmacognosy, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.biotechadv.2018.04.006DOI Listing
November 2018

Vascular smooth muscle cell proliferation as a therapeutic target. Part 2: Natural products inhibiting proliferation.

Biotechnol Adv 2018 11 17;36(6):1608-1621. Epub 2018 Apr 17.

Department of Molecular Biology, Institute of Genetics and Animal Breeding of the Polish Academy of Sciences, ul. Postepu 36A, Magdalenka 05552, Poland; Department of Pharmacognosy, University of Vienna, Althanstrasse 14, Vienna 1090, Austria. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.biotechadv.2018.04.002DOI Listing
November 2018

The functional genomic studies of resveratrol in respect to its anti-cancer effects.

Biotechnol Adv 2018 11 22;36(6):1699-1708. Epub 2018 Feb 22.

The Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Postępu 36A, Jastrzębiec, 05-552 Magdalenka, Poland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.biotechadv.2018.02.011DOI Listing
November 2018

Ethnopharmacological Approaches for Therapy of Jaundice: Part I.

Front Pharmacol 2017 15;8:518. Epub 2017 Aug 15.

Institute of Genetics and Animal Breeding of the Polish Academy of SciencesJastrzebiec, Poland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fphar.2017.00518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559545PMC
August 2017

The functional genomic studies of curcumin.

Semin Cancer Biol 2017 10 6;46:107-118. Epub 2017 Apr 6.

The Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Postępu 36A, Jastrzębiec, 05-552 Magdalenka, Poland; Department of Pharmacognosy, Faculty of Life Sciences, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.semcancer.2017.04.002DOI Listing
October 2017

Can We Predict Gene Expression by Understanding Proximal Promoter Architecture?

Trends Biotechnol 2017 06 1;35(6):530-546. Epub 2017 Apr 1.

Institute of Genetics and Animal Breeding, Polish Academy of Sciences, ul. Postępu 36A, Jastrzębiec, 05-552 Magdalenka, Poland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tibtech.2017.03.007DOI Listing
June 2017

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome.

PLoS Biol 2015 Dec 18;13(12):e1002315. Epub 2015 Dec 18.

The Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.1002315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686125PMC
December 2015

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Polyploidy and the evolution of complex traits.

Int J Evol Biol 2012 30;2012:292068. Epub 2012 Jul 30.

CMB, Karolinska Institute, 17177 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1155/2012/292068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413983PMC
August 2012

2R and remodeling of vertebrate signal transduction engine.

BMC Biol 2010 Dec 13;8:146. Epub 2010 Dec 13.

Ludwig Institute for Cancer Research, Uppsala University, Box 595, SE-751 24 Uppsala, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1741-7007-8-146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3238295PMC
December 2010

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

Pseudo-messenger RNA: phantoms of the transcriptome.

PLoS Genet 2006 Apr 28;2(4):e23. Epub 2006 Apr 28.

Genome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Yokohama, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.0020023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1449882PMC
April 2006

Clusters of co-expressed genes in mammalian genomes are conserved by natural selection.

Mol Biol Evol 2005 Mar 1;22(3):767-75. Epub 2004 Dec 1.

Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msi062DOI Listing
March 2005

Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse.

Genome Res 2004 Oct;14(10A):1870-9

Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.2705204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524410PMC
October 2004

Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases.

BMC Genomics 2003 Jul 29;4(1):31. Epub 2003 Jul 29.

Department of Genetics, Smurfit Institute, University of Dublin Trinity College, Dublin 2, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-4-31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC183867PMC
July 2003

Magic roundabout is a new member of the roundabout receptor family that is endothelial specific and expressed at sites of active angiogenesis.

Genomics 2002 Apr;79(4):547-52

Molecular Angiogenesis Laboratory, Cancer Research UK, Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DS, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1006/geno.2002.6745DOI Listing
April 2002