Lukas Reiter

Lukas Reiter

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Lukas Reiter

Lukas Reiter

Publications by authors named "Lukas Reiter"

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Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries.

Nat Commun 2020 Feb 7;11(1):787. Epub 2020 Feb 7.

Novo Nordisk Foundation Center for Protein Research, Proteomics Program, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3b, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41467-020-14609-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005859PMC
February 2020

Systematic Comparison of Strategies for the Enrichment of Lysosomes by Data Independent Acquisition.

J Proteome Res 2020 Jan 10;19(1):371-381. Epub 2019 Dec 10.

Institute for Biochemistry and Molecular Biology , University of Bonn , 53115 Bonn , Germany.

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http://dx.doi.org/10.1021/acs.jproteome.9b00580DOI Listing
January 2020

Classification of mouse B cell types using surfaceome proteotype maps.

Nat Commun 2019 12 16;10(1):5734. Epub 2019 Dec 16.

Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093, Zurich, Switzerland.

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http://dx.doi.org/10.1038/s41467-019-13418-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6915781PMC
December 2019

Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry.

Mol Cell Proteomics 2019 04 16;18(4):786-795. Epub 2019 Jan 16.

From the ‡Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany;

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http://dx.doi.org/10.1074/mcp.TIR118.001276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442367PMC
April 2019

Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.

J Proteome Res 2019 03 20;18(3):1340-1351. Epub 2019 Feb 20.

Biognosys AG , Wagistrasse 21 , 8952 Schlieren , Switzerland.

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http://dx.doi.org/10.1021/acs.jproteome.8b00898DOI Listing
March 2019

MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments.

J Proteome Res 2019 02 14;18(2):678-686. Epub 2018 Dec 14.

College of Computer Science , Northeastern University , Boston , Massachusetts 02115 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.8b00732DOI Listing
February 2019

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

Sci Rep 2018 03 12;8(1):4346. Epub 2018 Mar 12.

Department of Biochemistry and Cambridge Systems Biology Centre, University of Cambridge, 80 Tennis Court Rd, Cambridge, CB2 1GA, UK.

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http://dx.doi.org/10.1038/s41598-018-22610-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5847575PMC
March 2018

Plasma Proteomics for Epidemiology: Increasing Throughput With Standard-Flow Rates.

Circ Cardiovasc Genet 2017 Dec;10(6)

From the King's British Heart Foundation Centre, King's College London, United Kingdom (X.Y., F.B., E.H., H.H., M.M.); Agilent Technologies Ltd, Cheadle, United Kingdom (R.T.B., A.S.); Biognosys AG, Schlieren, Switzerland (T.G., S.M., L.R.); Department of Neurology, Medical University of Innsbruck, Austria (R.P., J.W., S.K.); School of Medicine, University of California San Diego (S.T., J.L.W.); and Department of Laboratory Medicine, Bruneck Hospital, Italy (P.S.).

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http://dx.doi.org/10.1161/CIRCGENETICS.117.001808DOI Listing
December 2017

Primary resistance of Helicobacter pylori is still low in Southern Austria.

Int J Med Microbiol 2016 Jun 23;306(4):206-11. Epub 2016 Apr 23.

Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Austria.

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http://dx.doi.org/10.1016/j.ijmm.2016.04.003DOI Listing
June 2016

Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer.

J Proteome Res 2015 Nov 22;14(11):4752-62. Epub 2015 Oct 22.

Departments of Pathology, Boston Children's Hospital and Harvard Medical School , Boston, Massachusetts 02115, United States.

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http://dx.doi.org/10.1021/acs.jproteome.5b00826DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993212PMC
November 2015

Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry.

J Proteome Res 2015 Aug 13;14(8):3252-62. Epub 2015 Jul 13.

§BiognoSYS AG, Wagistrasse 25, CH-8952 Schlieren, Switzerland.

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http://dx.doi.org/10.1021/acs.jproteome.5b00245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4564294PMC
August 2015

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.

Mol Cell Proteomics 2015 Mar 5;14(3):739-49. Epub 2015 Jan 5.

From the ‡Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, 8093 Zürich, Switzerland; ‡‡Faculty of Science, University of Zürich, Switzerland;

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http://dx.doi.org/10.1074/mcp.M113.035550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349991PMC
March 2015

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Mol Cell Proteomics 2012 Jun 18;11(6):O111.016717. Epub 2012 Jan 18.

Department of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, 8093 Zürich, Switzerland.

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http://dx.doi.org/10.1074/mcp.O111.016717DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3433915PMC
June 2012

Generic comparison of protein inference engines.

Mol Cell Proteomics 2012 Apr 4;11(4):O110.007088. Epub 2011 Nov 4.

Department of Biology, Institute of Molecular Systems Biology, Swiss Federal Institute of Technology Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1074/mcp.O110.007088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3322578PMC
April 2012