Publications by authors named "Luis Barreiro"

97Publications

Herd Immunity: Understanding COVID-19.

Immunity 2020 05;52(5):737-741

Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, USA; Department of Medicine, Section of Genetic Medicine, University of Chicago, Chicago, IL 60637, USA; Committee on Immunology, University of Chicago, Chicago, IL 60637, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2020.04.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7236739PMC
May 2020

Evolutionary and population (epi)genetics of immunity to infection.

Hum Genet 2020 Jun 13;139(6-7):723-732. Epub 2020 Apr 13.

Unit of Human Evolutionary Genetics, CNRS UMR2000, Institut Pasteur, 75015, Paris, France.

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http://dx.doi.org/10.1007/s00439-020-02167-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285878PMC
June 2020

The epigenetically-encoded memory of the innate immune system.

Curr Opin Immunol 2020 Mar 25;65:7-13. Epub 2020 Mar 25.

Committee on Immunology, University of Chicago, Chicago, IL 60637, USA; Department of Medicine, Section of Genetic Medicine, University of Chicago, Chicago, IL 60637, USA. Electronic address:

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http://dx.doi.org/10.1016/j.coi.2020.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7529637PMC
March 2020

Transposable elements have contributed human regulatory regions that are activated upon bacterial infection.

Philos Trans R Soc Lond B Biol Sci 2020 03 10;375(1795):20190332. Epub 2020 Feb 10.

Department of Human Genetics, McGill University, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1098/rstb.2019.0332DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061985PMC
March 2020

Identification of a γc Receptor Antagonist That Prevents Reprogramming of Human Tissue-resident Cytotoxic T Cells by IL15 and IL21.

Gastroenterology 2020 02 14;158(3):625-637.e13. Epub 2019 Oct 14.

Department of Medicine, University of Chicago, Chicago, Illinois; Committee on Immunology, University of Chicago, Chicago, Illinois; Department of Pathology and Pediatrics, University of Chicago, Chicago, Illinois. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2019.10.006DOI Listing
February 2020

Social history and exposure to pathogen signals modulate social status effects on gene regulation in rhesus macaques.

Proc Natl Acad Sci U S A 2020 Sep 14;117(38):23317-23322. Epub 2019 Oct 14.

Department of Genetics, CHU Sainte-Justine Research Center, Montreal, QC, Canada H3T1C5;

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http://dx.doi.org/10.1073/pnas.1820846116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7519294PMC
September 2020

Gene activation precedes DNA demethylation in response to infection in human dendritic cells.

Proc Natl Acad Sci U S A 2019 04 18;116(14):6938-6943. Epub 2019 Mar 18.

Department of Genetics, CHU Sainte-Justine Research Center, Montreal, H3T1C5, Canada;

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http://dx.doi.org/10.1073/pnas.1814700116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6452747PMC
April 2019

Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics.

Cell Mol Gastroenterol Hepatol 2019 24;7(2):411-431. Epub 2018 Oct 24.

Cardiovascular Genetics, Department of Pediatrics, Centre Hospitalier Universitaire Sainte Justine Research Center, Université de Montréal, Montréal, Québec, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.jcmgh.2018.10.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369230PMC
May 2019

Genetic and evolutionary determinants of human population variation in immune responses.

Curr Opin Genet Dev 2018 12 28;53:28-35. Epub 2018 Jun 28.

Department of Genetics, CHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada; Department of Pediatrics, Faculty of Medicine, Université de Montréal, Montreal, QC H3T 1C5, Canada. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0959437X183008
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http://dx.doi.org/10.1016/j.gde.2018.06.009DOI Listing
December 2018

Holy Immune Tolerance, Batman!

Immunity 2018 06;48(6):1074-1076

Department of Genetics, CHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada; Department of Pediatrics, Faculty of Medicine, Université de Montréal, Montreal, QC H3T 1C5, Canada. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613183025
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http://dx.doi.org/10.1016/j.immuni.2018.05.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7110998PMC
June 2018

BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis.

Cell 2018 01;172(1-2):176-190.e19

Meakins-Christie Laboratories, Department of Medicine, Department of Microbiology and Immunology, Department of Pathology, McGill International TB Centre, McGill University Health Centre, Montreal, QC H4A 3J1, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2017.12.031DOI Listing
January 2018

The contribution of admixture to primate evolution.

Curr Opin Genet Dev 2017 Dec 15;47:61-68. Epub 2017 Sep 15.

Department of Pediatrics, Sainte-Justine Hospital Research Centre, University of Montreal, Montreal, Canada.

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http://dx.doi.org/10.1016/j.gde.2017.08.010DOI Listing
December 2017

Deciphering the genetic control of gene expression following Mycobacterium leprae antigen stimulation.

PLoS Genet 2017 Aug 9;13(8):e1006952. Epub 2017 Aug 9.

Program in Infectious Diseases and Immunity in Global Health, The Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1371/journal.pgen.1006952DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565194PMC
August 2017

Adaptively introgressed Neandertal haplotype at the OAS locus functionally impacts innate immune responses in humans.

Genome Biol 2016 11 29;17(1):246. Epub 2016 Nov 29.

Department of Genetics, Sainte-Justine Hospital Research Centre, University of Montreal, Montreal, QC, Canada.

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http://dx.doi.org/10.1186/s13059-016-1098-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5129249PMC
November 2016

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens.

Cell 2016 Oct;167(3):657-669.e21

Department of Genetics, CHU Sainte-Justine Research Center, Montreal, QC H3T1C5, Canada; Department of Pediatrics, Faculty of Medicine, Université de Montréal, Montreal, QC H3T1J4, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.09.025DOI Listing
October 2016

Genetic and transcriptional analysis of human host response to healthy gut microbiota.

mSystems 2016 Jul-Aug;1(4). Epub 2016 Aug 30.

Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI; Department of Obstetrics and Gynecology, Wayne State University, Detroit, MI.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047527PMC
http://dx.doi.org/10.1128/mSystems.00067-16DOI Listing
August 2016

Dominance rank causally affects personality and glucocorticoid regulation in female rhesus macaques.

Psychoneuroendocrinology 2016 12 12;74:179-188. Epub 2016 Sep 12.

Yerkes National Primate Research Center, Emory University, Atlanta, GA, 30322, USA; Department of Psychiatry & Behavioral Sciences, Emory University School of Medicine, Atlanta, GA, 30322, USA.

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http://dx.doi.org/10.1016/j.psyneuen.2016.09.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5494262PMC
December 2016

The macrophage IRF8/IRF1 regulome is required for protection against infections and is associated with chronic inflammation.

J Exp Med 2016 Apr 21;213(4):585-603. Epub 2016 Mar 21.

Department of Biochemistry, McGill University, H3G 0B1 Montreal, Quebec, Canada Complex Traits Group, McGill University, H3G 0B1 Montreal, Quebec, Canada

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http://dx.doi.org/10.1084/jem.20151764DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4821649PMC
April 2016

Social status drives social relationships in groups of unrelated female rhesus macaques.

Anim Behav 2016 Jan;111:307-317

Department of Evolutionary Anthropology, Duke University, Durham, NC, U.S.A.; Department of Biology, Duke University, Durham, NC, U.S.A.; Institute of Primate Research, National Museums of Kenya, Nairobi, Kenya; Duke Population Research Institute, Duke University, Durham, NC, U.S.A.

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http://dx.doi.org/10.1016/j.anbehav.2015.10.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707678PMC
January 2016

Mycobacterial infection induces a specific human innate immune response.

Sci Rep 2015 Nov 20;5:16882. Epub 2015 Nov 20.

Department of Human Genetics, University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1038/srep16882DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4653619PMC
November 2015

Genome-Wide Association Studies of the Human Gut Microbiota.

PLoS One 2015 3;10(11):e0140301. Epub 2015 Nov 3.

Department of Human Genetics, University of Chicago, Chicago, IL, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140301PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631601PMC
June 2016

Characterizing 5-hydroxymethylcytosine in human prefrontal cortex at single base resolution.

BMC Genomics 2015 Sep 3;16:672. Epub 2015 Sep 3.

McGill Group for Suicide Studies, Douglas Mental Health University Institute, 6875 boul. Lasalle, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1186/s12864-015-1875-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559220PMC
September 2015

Fetal microglial phenotype in vitro carries memory of prior in vivo exposure to inflammation.

Front Cell Neurosci 2015 4;9:294. Epub 2015 Aug 4.

Department of Obstetrics and Gynaecology, Faculty of Medicine, CHU Ste-Justine Research Centre, Université de Montréal Montréal, QC, Canada ; Department of Neurosciences, Faculty of Medicine, CHU Ste-Justine Research Centre, Université de Montréal Montréal, QC, Canada ; Faculty of Veterinary Medicine, Animal Reproduction Research Centre, Université de Montréal Montréal, QC, Canada.

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http://dx.doi.org/10.3389/fncel.2015.00294DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524165PMC
August 2015

bacterial infection drives the expression dynamics of microRNAs and their isomiRs.

PLoS Genet 2015 Mar 20;11(3):e1005064. Epub 2015 Mar 20.

Institut Pasteur, Unit of Human Evolutionary Genetics, Paris, France; Centre National de la Recherche Scientifique, Paris, France.

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http://dx.doi.org/10.1371/journal.pgen.1005064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4368565PMC
March 2015

Reservoir host immune responses to emerging zoonotic viruses.

Cell 2015 Jan 18;160(1-2):20-35. Epub 2014 Dec 18.

Merck Vaccines, Merck & Co. Inc., West Point, PA 19486, USA.

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http://dx.doi.org/10.1016/j.cell.2014.12.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390999PMC
January 2015

The contribution of natural selection to present-day susceptibility to chronic inflammatory and autoimmune disease.

Curr Opin Immunol 2014 Dec 22;31:66-78. Epub 2014 Oct 22.

Sainte-Justine Hospital Research Centre, Montréal, Quebec H3T 1C5, Canada; Department of Pediatrics, Faculty of Medicine, University of Montreal, Montreal, Quebec H3T 1J4, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.coi.2014.09.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344185PMC
December 2014

Editorial Overview: immunogenetics and transplantation: bringing evolution and genomics to human immunology.

Curr Opin Immunol 2014 Oct 17;30:v-vii. Epub 2014 Sep 17.

Unit of Human Evolutionary Genetics, Institut Pasteur and CNRS URA3012, Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.coi.2014.09.003DOI Listing
October 2014

Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers.

Proc Natl Acad Sci U S A 2014 09 18;111(35):E3596-603. Epub 2014 Aug 18.

Sainte-Justine Hospital Research Centre, Montreal, QC, Canada H3T 1C5; Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland;

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http://dx.doi.org/10.1073/pnas.1402875111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4156716PMC
September 2014

When genetics meets epigenetics: deciphering the mechanisms controlling inter-individual variation in immune responses to infection.

Curr Opin Immunol 2014 Aug 28;29:119-26. Epub 2014 Jun 28.

Sainte-Justine Hospital Research Centre, Montréal, Quebec H3T 1C5, Canada; Department of Pediatrics, Faculty of Medicine, University of Montreal, Montreal, Quebec H3T 1J4, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.coi.2014.06.002DOI Listing
August 2014

Exploring the occurrence of classic selective sweeps in humans using whole-genome sequencing data sets.

Mol Biol Evol 2014 Jul 1;31(7):1850-68. Epub 2014 Apr 1.

Institut Pasteur, Human Evolutionary Genetics, Department of Genomes and Genetics, Paris, FranceCentre National de la Recherche Scientifique, URA3012, Paris, France

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http://dx.doi.org/10.1093/molbev/msu118DOI Listing
July 2014

Seasonal variation in human gut microbiome composition.

PLoS One 2014 11;9(3):e90731. Epub 2014 Mar 11.

Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0090731PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949691PMC
May 2015

Gene set signature of reversal reaction type I in leprosy patients.

PLoS Genet 2013 11;9(7):e1003624. Epub 2013 Jul 11.

McGill International TB Centre, The Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada.

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http://dx.doi.org/10.1371/journal.pgen.1003624DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708838PMC
January 2014

Proteomic characterization of phagosomal membrane microdomains during phagolysosome biogenesis and evolution.

Mol Cell Proteomics 2012 Nov 20;11(11):1365-77. Epub 2012 Aug 20.

Département de pathologie et biologie cellulaire, Université de Montréal, and Département de pédiatrie, Centre de recherche de l'hôpital Sainte-Justine, C.P. 6128, Succ centre ville, Montréal, Québec, H3C 3J7, Canada.

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http://dx.doi.org/10.1074/mcp.M112.021048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3494184PMC
November 2012

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection.

Proc Natl Acad Sci U S A 2012 Jan 10;109(4):1204-9. Epub 2012 Jan 10.

Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1073/pnas.1115761109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268270PMC
January 2012

Evolutionary genetic dissection of human interferons.

J Exp Med 2011 Dec 12;208(13):2747-59. Epub 2011 Dec 12.

Unit of Human Evolutionary Genetics, Department of Genomes and Genetics, Institut Pasteur, F-75015 Paris, France.

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http://dx.doi.org/10.1084/jem.20111680DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244034PMC
December 2011

Don't move: LRRK2 arrests NFAT in the cytoplasm.

Nat Immunol 2011 Oct 19;12(11):1029-30. Epub 2011 Oct 19.

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http://dx.doi.org/10.1038/ni.2139DOI Listing
October 2011

Evolution of the TIR domain-containing adaptors in humans: swinging between constraint and adaptation.

Mol Biol Evol 2011 Nov 9;28(11):3087-97. Epub 2011 Jun 9.

Human Evolutionary Genetics, Department of Genomes and Genetics, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1093/molbev/msr137DOI Listing
November 2011

Functional characterization of naturally occurring genetic variants in the human TLR1-2-6 gene family.

Hum Mutat 2011 Jun;32(6):643-52

Institut Pasteur, Human Evolutionary Genetics, Department of Genomes and Genetics, Paris, France.

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http://dx.doi.org/10.1002/humu.21486DOI Listing
June 2011

Evolutionary genetics evidence of an essential, nonredundant role of the IFN-γ pathway in protective immunity.

Hum Mutat 2011 Jun 29;32(6):633-42. Epub 2011 Mar 29.

Institut Pasteur, Human Evolutionary Genetics, Department of Genomes and Genetics, Paris, France.

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http://dx.doi.org/10.1002/humu.21484DOI Listing
June 2011

Functional comparison of innate immune signaling pathways in primates.

PLoS Genet 2010 Dec 16;6(12):e1001249. Epub 2010 Dec 16.

Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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https://dx.plos.org/10.1371/journal.pgen.1001249
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http://dx.doi.org/10.1371/journal.pgen.1001249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3002988PMC
December 2010

The role played by natural selection on Mendelian traits in humans.

Ann N Y Acad Sci 2010 Dec;1214:1-17

Institut Pasteur, Human Evolutionary Genetics, Department of Genomes and Genetics, Paris, France.

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http://dx.doi.org/10.1111/j.1749-6632.2010.05856.xDOI Listing
December 2010

From evolutionary genetics to human immunology: how selection shapes host defence genes.

Nat Rev Genet 2010 Jan 1;11(1):17-30. Epub 2009 Dec 1.

Human Evolutionary Genetics, Institut Pasteur, Centre National de la Recherche Scientifique URA3012, Paris 75015, France.

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http://dx.doi.org/10.1038/nrg2698DOI Listing
January 2010

High-throughput SNP genotyping: combining tag SNPs and molecular beacons.

Methods Mol Biol 2009 ;578:255-76

Department of Human Genetics, The University of Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1007/978-1-60327-411-1_17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7121513PMC
December 2009

Signatures of purifying and local positive selection in human miRNAs.

Am J Hum Genet 2009 Mar 19;84(3):316-27. Epub 2009 Feb 19.

Institut Pasteur, Human Evolutionary Genetics, Centre National pour la Recherche Scientifique, URA3012, Paris, France.

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http://dx.doi.org/10.1016/j.ajhg.2009.01.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667980PMC
March 2009

Protective role of DC-SIGN (CD209) neck-region alleles with <5 repeat units in HIV-1 transmission.

J Infect Dis 2008 Jul;198(1):68-71

Institute for AIDS Prevention and Control, Shandong Center for Disease Control and Prevention, Shandong, China.

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http://dx.doi.org/10.1086/588710DOI Listing
July 2008

Molecular epidemiology of Mycobacterium tuberculosis in Lisbon.

Rev Port Pneumol 2008 Mar-Apr;14(2):239-59

Farmácia da Universidade de Lisboa, Instituto Nacional de Saúde Dr. Ricardo Jorge, Centro de Patogénese Molecular, Faculdade de Farmácia da Universidade de Lisboa, Portugal.

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http://dx.doi.org/10.1016/s0873-2159(15)30233-6DOI Listing
October 2008

Natural selection has driven population differentiation in modern humans.

Nat Genet 2008 Mar 3;40(3):340-5. Epub 2008 Feb 3.

Human Evolutionary Genetics Unit, Centre National de la Recherche Scientifique-Unité de Recherche Associée (CNRS-URA3012), Institut Pasteur, 25 rue Dr. Roux, Paris 75015, France.

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http://dx.doi.org/10.1038/ng.78DOI Listing
March 2008

Length variation of DC-SIGN and L-SIGN neck-region has no impact on tuberculosis susceptibility.

Hum Immunol 2007 Feb 4;68(2):106-12. Epub 2006 Dec 4.

CNRS FRE2849, Unit of Human Evolutionary Genetics, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1016/j.humimm.2006.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7132702PMC
February 2007

Evolutionary insights into the high worldwide prevalence of MBL2 deficiency alleles.

Hum Mol Genet 2006 Sep 2;15(17):2650-8. Epub 2006 Aug 2.

CNRS FRE 2849, Unit of Molecular Prevention and Therapy of Human Diseases, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1093/hmg/ddl193DOI Listing
September 2006

The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region.

Am J Hum Genet 2005 Nov 29;77(5):869-86. Epub 2005 Sep 29.

Centre National de la Recherche Scientifique FRE 2849, Unit of Molecular Prevention and Therapy of Human Diseases, Institut Pasteur, 25, 75724 Paris Cedex 15, France.

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http://dx.doi.org/10.1086/497613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1271393PMC
November 2005

pncA mutations in pyrazinamide-resistant Mycobacterium tuberculosis isolates in Portugal.

Antimicrob Agents Chemother 2004 Jul;48(7):2736-8

Centro de Patogénese Molecular, Faculdade de Farmácia da Universidade de Lisboa, Rua Prof. Gama Pinto, 1649-003 Lisbon, Portugal.

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http://aac.asm.org/cgi/doi/10.1128/AAC.48.7.2736-2738.2004
Publisher Site
http://dx.doi.org/10.1128/AAC.48.7.2736-2738.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC434191PMC
July 2004