Ludovic Orlando

Ludovic Orlando

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Ancient Genomes Reveal Unexpected Horse Domestication and Management Dynamics.

Authors:
Ludovic Orlando

Bioessays 2019 Dec 6:e1900164. Epub 2019 Dec 6.

Laboratoire d'Anthropobiologie et d'Imagerie de Synthèse, CNRS UMR 5288, Faculté de Médecine de Purpan, 37 allées Jules Guesde, Bâtiment A, 31000, Toulouse, France.

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http://dx.doi.org/10.1002/bies.201900164DOI Listing
December 2019

Authentication and Assessment of Contamination in Ancient DNA.

Methods Mol Biol 2019 ;1963:163-194

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark.

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http://dx.doi.org/10.1007/978-1-4939-9176-1_17DOI Listing
September 2019

Origin and Evolution of Deleterious Mutations in Horses.

Genes (Basel) 2019 08 28;10(9). Epub 2019 Aug 28.

Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, Université de Toulouse, Université Paul Sabatier, 31000 Toulouse, France.

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http://dx.doi.org/10.3390/genes10090649DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6769756PMC
August 2019

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

Genetics 2019 07 14;212(3):587-614. Epub 2019 May 14.

Lundbeck Foundation GeoGenetics Center, Globe Institute, University of Copenhagen, 1350K, Denmark.

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http://dx.doi.org/10.1534/genetics.119.302057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6614887PMC
July 2019

EPAS1 gain-of-function mutation contributes to high-altitude adaptation in Tibetan horses.

Mol Biol Evol 2019 Jul 2. Epub 2019 Jul 2.

Laboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture, Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, P. R. China.

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http://dx.doi.org/10.1093/molbev/msz158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805228PMC
July 2019

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.

Authors:
Antoine Fages Kristian Hanghøj Naveed Khan Charleen Gaunitz Andaine Seguin-Orlando Michela Leonardi Christian McCrory Constantz Cristina Gamba Khaled A S Al-Rasheid Silvia Albizuri Ahmed H Alfarhan Morten Allentoft Saleh Alquraishi David Anthony Nurbol Baimukhanov James H Barrett Jamsranjav Bayarsaikhan Norbert Benecke Eloísa Bernáldez-Sánchez Luis Berrocal-Rangel Fereidoun Biglari Sanne Boessenkool Bazartseren Boldgiv Gottfried Brem Dorcas Brown Joachim Burger Eric Crubézy Linas Daugnora Hossein Davoudi Peter de Barros Damgaard María de Los Ángeles de Chorro Y de Villa-Ceballos Sabine Deschler-Erb Cleia Detry Nadine Dill Maria do Mar Oom Anna Dohr Sturla Ellingvåg Diimaajav Erdenebaatar Homa Fathi Sabine Felkel Carlos Fernández-Rodríguez Esteban García-Viñas Mietje Germonpré José D Granado Jón H Hallsson Helmut Hemmer Michael Hofreiter Aleksei Kasparov Mutalib Khasanov Roya Khazaeli Pavel Kosintsev Kristian Kristiansen Tabaldiev Kubatbek Lukas Kuderna Pavel Kuznetsov Haeedeh Laleh Jennifer A Leonard Johanna Lhuillier Corina Liesau von Lettow-Vorbeck Andrey Logvin Lembi Lõugas Arne Ludwig Cristina Luis Ana Margarida Arruda Tomas Marques-Bonet Raquel Matoso Silva Victor Merz Enkhbayar Mijiddorj Bryan K Miller Oleg Monchalov Fatemeh A Mohaseb Arturo Morales Ariadna Nieto-Espinet Heidi Nistelberger Vedat Onar Albína H Pálsdóttir Vladimir Pitulko Konstantin Pitskhelauri Mélanie Pruvost Petra Rajic Sikanjic Anita Rapan Papeša Natalia Roslyakova Alireza Sardari Eberhard Sauer Renate Schafberg Amelie Scheu Jörg Schibler Angela Schlumbaum Nathalie Serrand Aitor Serres-Armero Beth Shapiro Shiva Sheikhi Seno Irina Shevnina Sonia Shidrang John Southon Bastiaan Star Naomi Sykes Kamal Taheri William Taylor Wolf-Rüdiger Teegen Tajana Trbojević Vukičević Simon Trixl Dashzeveg Tumen Sainbileg Undrakhbold Emma Usmanova Ali Vahdati Silvia Valenzuela-Lamas Catarina Viegas Barbara Wallner Jaco Weinstock Victor Zaibert Benoit Clavel Sébastien Lepetz Marjan Mashkour Agnar Helgason Kári Stefánsson Eric Barrey Eske Willerslev Alan K Outram Pablo Librado Ludovic Orlando

Cell 2019 May 2;177(6):1419-1435.e31. Epub 2019 May 2.

Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, Université de Toulouse, Université Paul Sabatier, 31000 Toulouse, France; Lundbeck Foundation GeoGenetics Center, University of Copenhagen, 1350K Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.03.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6547883PMC
May 2019

DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage.

Gigascience 2019 04;8(4)

Lundbeck Foundation GeoGenetics Center, University of Copenhagen, Øster Voldgade 5-7, 1350K Copenhagen, Denmark.

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http://dx.doi.org/10.1093/gigascience/giz025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474913PMC
April 2019

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA.

Genome Biol 2019 02 11;20(1):29. Epub 2019 Feb 11.

INRA-UCA UMR 1095 Génétique Diversité et Ecophysiologie des Céréales, 63100, Clermont-Ferrand, France.

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https://genomebiology.biomedcentral.com/articles/10.1186/s13
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http://dx.doi.org/10.1186/s13059-019-1627-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369560PMC
February 2019

Author Correction: 137 ancient human genomes from across the Eurasian steppes.

Nature 2018 11;563(7729):E16

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41586-018-0488-1DOI Listing
November 2018

Late Bronze Age cultural origins of dairy pastoralism in Mongolia.

Authors:
Ludovic Orlando

Proc Natl Acad Sci U S A 2018 11 12;115(48):12083-12085. Epub 2018 Nov 12.

Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, Université de Toulouse III-Paul Sabatier, 31000 Toulouse, France;

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http://dx.doi.org/10.1073/pnas.1817559115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275477PMC
November 2018

Oral health status in historic population: Macroscopic and metagenomic evidence.

PLoS One 2018 16;13(5):e0196482. Epub 2018 May 16.

Laboratoire d'Anthropologie Moléculaire et d'Imagerie de Synthèse UMR 5288, Université de Toulouse, CNRS, Université Paul Sabatier, Toulouse, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0196482PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5955521PMC
August 2018

Late Quaternary horses in Eurasia in the face of climate and vegetation change.

Sci Adv 2018 07 25;4(7):eaar5589. Epub 2018 Jul 25.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350K Copenhagen, Denmark.

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http://dx.doi.org/10.1126/sciadv.aar5589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6059734PMC
July 2018

Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD.

Mol Biol Evol 2018 06;35(6):1520-1535

Centre for GeoGenetics, Natural History Museum of Denmark, Copenhagen, Denmark.

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http://dx.doi.org/10.1093/molbev/msy053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967574PMC
June 2018

137 ancient human genomes from across the Eurasian steppes.

Nature 2018 05 9;557(7705):369-374. Epub 2018 May 9.

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

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http://www.nature.com/articles/s41586-018-0094-2
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http://dx.doi.org/10.1038/s41586-018-0094-2DOI Listing
May 2018

A southern African origin and cryptic structure in the highly mobile plains zebra.

Nat Ecol Evol 2018 03 22;2(3):491-498. Epub 2018 Jan 22.

Department of Biology, Section for Computational and RNA Biology, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41559-017-0453-7DOI Listing
March 2018

Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs.

Front Microbiol 2018 19;9:227. Epub 2018 Feb 19.

Laboratoire des Sciences de l'Environnement Marin, Université de Bretagne Occidentale, UMR 6539 UBO/Centre National de la Recherche Scientifique/IRD/Ifremer, Institut Universitaire Européen de la Mer, Plouzané, France.

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http://dx.doi.org/10.3389/fmicb.2018.00227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5825899PMC
February 2018

Evaluating the impact of domestication and captivity on the horse gut microbiome.

Sci Rep 2017 11 14;7(1):15497. Epub 2017 Nov 14.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldade 5-7, 1350 K, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41598-017-15375-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686199PMC
November 2017

A new genus of horse from Pleistocene North America.

Elife 2017 11 28;6. Epub 2017 Nov 28.

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, United States.

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http://dx.doi.org/10.7554/eLife.29944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705217PMC
November 2017

Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past.

Mol Ecol Resour 2017 Sep 12;17(5):835-853. Epub 2017 May 12.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark.

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http://dx.doi.org/10.1111/1755-0998.12679DOI Listing
September 2017

A Robust Framework for Microbial Archaeology.

Annu Rev Genomics Hum Genet 2017 08 26;18:321-356. Epub 2017 Apr 26.

Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena 07745, Germany; email:

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http://dx.doi.org/10.1146/annurev-genom-091416-035526DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5581243PMC
August 2017

Combining bleach and mild predigestion improves ancient DNA recovery from bones.

Mol Ecol Resour 2017 Jul 15;17(4):742-751. Epub 2016 Dec 15.

Department of Biosciences, Centre for Ecological and Evolutionary Synthesis, University of Oslo, PO Box 1066, Blindern, N-0316, Oslo, Norway.

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http://dx.doi.org/10.1111/1755-0998.12623DOI Listing
July 2017

Less effective selection leads to larger genomes.

Genome Res 2017 06 19;27(6):1016-1028. Epub 2017 Apr 19.

Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5023, ENTPE, Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés, F-69622 Villeurbanne, France.

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http://dx.doi.org/10.1101/gr.212589.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453316PMC
June 2017

Experimental conditions improving in-solution target enrichment for ancient DNA.

Mol Ecol Resour 2017 May 18;17(3):508-522. Epub 2016 Sep 18.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350K, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/1755-0998.12595DOI Listing
May 2017

Mitogenomic Phylogeny, Diversification, and Biogeography of South American Spiny Rats.

Mol Biol Evol 2017 03;34(3):613-633

Institut des Sciences de l'Evolution (ISEM, UMR 5554 CNRS-IRD-UM), Université de Montpellier, Montpellier, France.

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http://dx.doi.org/10.1093/molbev/msw261DOI Listing
March 2017

gargammel: a sequence simulator for ancient DNA.

Bioinformatics 2017 02;33(4):577-579

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K Copenhagen, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btw670DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408798PMC
February 2017

Taming the Past: Ancient DNA and the Study of Animal Domestication.

Annu Rev Anim Biosci 2017 02 28;5:329-351. Epub 2016 Oct 28.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; email:

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http://dx.doi.org/10.1146/annurev-animal-022516-022747DOI Listing
February 2017

Human evolution: a tale from ancient genomes.

Philos Trans R Soc Lond B Biol Sci 2017 02;372(1713)

Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350 K Copenhagen, Denmark

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http://rstb.royalsocietypublishing.org/content/royptb/372/17
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http://dx.doi.org/10.1098/rstb.2015.0484DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182416PMC
February 2017

Evolutionary Patterns and Processes: Lessons from Ancient DNA.

Syst Biol 2017 Jan;66(1):e1-e29

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade, Copenhagen, Denmark.

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http://dx.doi.org/10.1093/sysbio/syw059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5410953PMC
January 2017

Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX.

Mol Biol Evol 2016 12 13;33(12):3284-3298. Epub 2016 Sep 13.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark

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http://dx.doi.org/10.1093/molbev/msw184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100044PMC
December 2016

metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data.

Mol Ecol Resour 2016 Nov 22;16(6):1415-1427. Epub 2016 Jun 22.

Centre for Geogenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen K, Denmark.

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http://dx.doi.org/10.1111/1755-0998.12546DOI Listing
November 2016

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA.

Nat Ecol Evol 2016 Nov 21;1(1). Epub 2016 Nov 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen K, Denmark.

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http://dx.doi.org/10.1038/s41559-016-0004DOI Listing
November 2016

The Evolutionary Origin and Genetic Makeup of Domestic Horses.

Genetics 2016 Oct;204(2):423-434

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350K, Denmark Laboratoire Anthropobiologie Moléculaire et d'Imagerie de Synthèse, Centre National de la Recherche Scientifique UMR 5288, Université Paul Sabatier (Toulouse III), 31000 Toulouse, France

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http://dx.doi.org/10.1534/genetics.116.194860DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5068837PMC
October 2016

The origin of ambling horses.

Curr Biol 2016 08;26(15):R697-R699

Department of Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Str. 17, 10315 Berlin, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2016.07.001DOI Listing
August 2016

Back to the roots and routes of dromedary domestication.

Authors:
Ludovic Orlando

Proc Natl Acad Sci U S A 2016 06 25;113(24):6588-90. Epub 2016 May 25.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen 1350K, Denmark

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http://dx.doi.org/10.1073/pnas.1606340113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914171PMC
June 2016

Synergistic roles of climate warming and human occupation in Patagonian megafaunal extinctions during the Last Deglaciation.

Sci Adv 2016 06 17;2(6):e1501682. Epub 2016 Jun 17.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia.; Henry Wellcome Ancient Biomolecules Centre, Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1126/sciadv.1501682DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4928889PMC
June 2016

Positive selection in the SLC11A1 gene in the family Equidae.

Immunogenetics 2016 05 4;68(5):353-64. Epub 2016 Feb 4.

Department of Animal Genetics, Research Group Immunogenomics, Ceitec VFU, University of Veterinary and Pharmaceutical Sciences, Brno, Czech Republic.

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http://dx.doi.org/10.1007/s00251-016-0905-2DOI Listing
May 2016

Mitochondrial Genetic Diversity of Eurasian Red Squirrels (Sciurus vulgaris) from Denmark.

J Hered 2015 Nov-Dec;106(6):719-27. Epub 2015 Oct 30.

From the Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark (Madsen, Vilstrup, Fernández, Marchi, and Orlando); the Eco-Anthropologie et Ethnobiologie, UMR 7206 CNRS, MNHN, Université Paris Diderot, Sorbonne Paris Cité, France (Marchi); the Danmarks Naturfredningsforening, Masnedøgade 20, 2100 Copenhagen, Denmark (Håkansson); the Naturstyrelsen, Naturstyrelsen på Fyn, Sollerupsvej 22, 5600 Faaborg, Denmark (Krog); Department of BioScience, Aarhus University, Grenåvej 14, 8410 Rønde, Denmark (Asferg); and the Zoological Museum, Natural History Museum of Denmark, Universitetsparken 15, 2100 Copenhagen, Denmark (Baagøe).

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http://jhered.oxfordjournals.org/content/early/2015/10/30/jh
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http://jhered.oxfordjournals.org/cgi/doi/10.1093/jhered/esv0
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http://dx.doi.org/10.1093/jhered/esv074DOI Listing
April 2016

Accurate continuous geographic assignment from low- to high-density SNP data.

Bioinformatics 2016 04 28;32(7):1106-8. Epub 2015 Nov 28.

Centre for GeoGenetics, Natural History Museum of Denmark and University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btv703DOI Listing
April 2016

Annotation of the Protein Coding Regions of the Equine Genome.

PLoS One 2015 24;10(6):e0124375. Epub 2015 Jun 24.

Maxwell H. Gluck Equine Research Center, Department of Veterinary Science, University of Kentucky, Lexington, Kentucky, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124375PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4481266PMC
March 2016

Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads.

PLoS One 2015 24;10(6):e0126852. Epub 2015 Jun 24.

Department of Biochemistry and Molecular Biology, School of Medicine, University of Louisville, Louisville, Kentucky, United States of America; Intrepid Bioinformatics, Louisville, Kentucky, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0126852PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479572PMC
March 2016

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing.

Mol Ecol Resour 2016 Mar 15;16(2):459-69. Epub 2015 Oct 15.

Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350K, Copenhagen, Denmark.

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http://dx.doi.org/10.1111/1755-0998.12470DOI Listing
March 2016

AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

BMC Res Notes 2016 Feb 12;9:88. Epub 2016 Feb 12.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s13104-016-1900-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751634PMC
February 2016

New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA.

Biotechniques 2015 Dec 1;59(6):368-71. Epub 2015 Dec 1.

Center for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.2144/000114364DOI Listing
December 2015

Equids.

Authors:
Ludovic Orlando

Curr Biol 2015 Oct;25(20):R973-8

Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350K Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2015.09.005DOI Listing
October 2015

The first aurochs genome reveals the breeding history of British and European cattle.

Authors:
Ludovic Orlando

Genome Biol 2015 Oct 26;16:225. Epub 2015 Oct 26.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, ØsterVoldgade 5-7, 1350K, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s13059-015-0793-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4620633PMC
October 2015

Reconstructing ancient genomes and epigenomes.

Nat Rev Genet 2015 Jul 9;16(7):395-408. Epub 2015 Jun 9.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, Copenhagen 1350C, Denmark.

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http://dx.doi.org/10.1038/nrg3935DOI Listing
July 2015

Improving access to endogenous DNA in ancient bones and teeth.

Sci Rep 2015 Jun 17;5:11184. Epub 2015 Jun 17.

Centre for GeoGenetics, Natural History Museum, University of Copenhagen.

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http://dx.doi.org/10.1038/srep11184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4472031PMC
June 2015

Planning tiger recovery: Understanding intraspecific variation for effective conservation.

Sci Adv 2015 Jun 26;1(5):e1400175. Epub 2015 Jun 26.

Department of Natural Sciences, National Museums Scotland, Edinburgh EH1 1JF, UK. ; Institute of Geography, School of Geosciences, University of Edinburgh, Edinburgh EH8 9XP, UK.

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http://dx.doi.org/10.1126/sciadv.1400175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4640610PMC
June 2015

Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids.

Biol Lett 2015 Mar;11(3)

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark Laboratoire AMIS, Université Paul Sabatier 3, Université de Toulouse, UMR CNRS 5288, 37 Allées Jules Guesde, 31073 Toulouse cedex 3, France

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http://dx.doi.org/10.1098/rsbl.2014.1058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4387498PMC
March 2015

Major transitions in human evolution revisited: a tribute to ancient DNA.

J Hum Evol 2015 Feb 19;79:4-20. Epub 2014 Dec 19.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.jhevol.2014.06.015DOI Listing
February 2015

Ancient DNA and human evolution.

J Hum Evol 2015 Feb 22;79:1-3. Epub 2015 Jan 22.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00472484140029
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http://dx.doi.org/10.1016/j.jhevol.2014.12.002DOI Listing
February 2015

Comparative genomics reveals insights into avian genome evolution and adaptation.

Science 2014 Dec 11;346(6215):1311-20. Epub 2014 Dec 11.

China National GeneBank, Beijing Genomics Institute (BGI)-Shenzhen, Shenzhen, 518083, China. Macau University of Science and Technology, Avenida Wai long, Taipa, Macau 999078, China. Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia. Department of Medicine, University of Hong Kong, Hong Kong.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1251385
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http://dx.doi.org/10.1126/science.1251385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390078PMC
December 2014

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Corrigendum.

Mol Ecol 2014 Nov;23(22):5646-5648

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http://dx.doi.org/10.1111/mec.12961DOI Listing
November 2014

Evolution. An epigenetic window into the past?

Science 2014 Aug;345(6196):511-2

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350K Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1256515DOI Listing
August 2014

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Cell 2014 May;157(4):785-94

BGI-Shenzhen, Shenzhen 518083, China; Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen Ø, Denmark; Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau 999078, China; Department of Medicine, University of Hong Kong, Sassoon Road, Pokfulam, Hong Kong. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.03.054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089990PMC
May 2014