Luciano Milanesi

Luciano Milanesi

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Luciano Milanesi

Publications by authors named "Luciano Milanesi"

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A diethylpyrocarbonate-based derivatization method for the LC-MS/MS measurement of plasma arginine and its chemically related metabolites and analogs.

Clin Chim Acta 2019 May 5;492:29-36. Epub 2019 Feb 5.

Department of Biomedical Sciences, School of Medicine, University of Sassari, Sassari, Italy; Quality Control Unit, University Hospital of Sassari (AOU-SS), Sassari, Italy.

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http://dx.doi.org/10.1016/j.cca.2019.02.004DOI Listing
May 2019

isma: an R package for the integrative analysis of mutations detected by multiple pipelines.

BMC Bioinformatics 2019 Feb 28;20(1):107. Epub 2019 Feb 28.

Institute of Biomedical Technologies, Italian National Research Council, Via Fratelli Cervi 93, 20090, Segrate, MI, Italy.

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http://dx.doi.org/10.1186/s12859-019-2701-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394085PMC
February 2019

An infrastructure for precision medicine through analysis of big data.

BMC Bioinformatics 2018 Oct 15;19(Suppl 10):351. Epub 2018 Oct 15.

Institute for Biomedical Technologies - National Research Council (CNR-ITB), via F.lli Cervi 93, Segrate, 20090, MI, Italy.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2300-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191972PMC
October 2018

Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7.

BMC Genomics 2018 Aug 6;19(1):587. Epub 2018 Aug 6.

Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126, Milan, Italy.

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http://dx.doi.org/10.1186/s12864-018-4965-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080516PMC
August 2018

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites.

BMC Bioinformatics 2017 Nov 25;18(1):520. Epub 2017 Nov 25.

San Raffaele Telethon Institute for Gene Therapy (SR-Tiget), IRCCS, San Raffaele Scientific Institute, Via Olgettina, 58, 20132, Milan, Italy.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-017-1937-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5702242PMC
November 2017

The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.

Genome Biol 2017 10 6;18(1):189. Epub 2017 Oct 6.

Laboratory of Molecular Medicine and Genomics, Department of Medicine, Surgery and Dentistry "Schola Medica Salernitana", University of Salerno, via S. Allende, 1, 84081, Baronissi, SA, Italy.

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http://dx.doi.org/10.1186/s13059-017-1321-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634881PMC
October 2017

Network Diffusion-Based Prioritization of Autism Risk Genes Identifies Significantly Connected Gene Modules.

Front Genet 2017 25;8:129. Epub 2017 Sep 25.

Bioinformatics Group, Institute of Biomedical Technologies, National Research Council of Italy, Segrate, Italy.

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http://dx.doi.org/10.3389/fgene.2017.00129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622537PMC
September 2017

HPC Analysis of Multiple Binding Sites Communication and Allosteric Modulations in Drug Design: The HSP Case Study.

Curr Drug Targets 2016 ;17(14):1610-1625

Institute of Biomedical Technologies, Italian National Research Council, Segrate (Mi), Italy.

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August 2017

Phenotype microarray analysis may unravel genetic determinants of the stress response by Rhodococcus aetherivorans BCP1 and Rhodococcus opacus R7.

Res Microbiol 2016 Nov - Dec;167(9-10):766-773. Epub 2016 Jul 7.

Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.resmic.2016.06.008DOI Listing
March 2017

iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.

Bioinformatics 2017 03;33(6):938-940

Laboratory of Molecular Medicine and Genomics, Department of Medicine, Surgery and Dentistry 'Scuola Medica Salernitana', University of Salerno, Baronissi, SA, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btw734DOI Listing
March 2017

The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer.

Front Genet 2016 15;7:194. Epub 2016 Nov 15.

Institute of Biomedical Technologies, Italian National Research Council Milan, Italy.

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http://dx.doi.org/10.3389/fgene.2016.00194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5108817PMC
November 2016

BITS 2015: the annual meeting of the Italian Society of Bioinformatics.

BMC Bioinformatics 2016 Nov 8;17(Suppl 12):396. Epub 2016 Nov 8.

Politecnico di Milano, Milan, Italy.

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http://dx.doi.org/10.1186/s12859-016-1187-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123416PMC
November 2016

Removing duplicate reads using graphics processing units.

BMC Bioinformatics 2016 Nov 8;17(Suppl 12):346. Epub 2016 Nov 8.

Institute for Biomedical Technologies, National Research Council, Via Fratelli Cervi, 93, Segrate (Mi), 20090, Italy.

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http://dx.doi.org/10.1186/s12859-016-1192-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123249PMC
November 2016

Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules.

Sci Rep 2016 10 12;6:34841. Epub 2016 Oct 12.

Institute of Biomedical Technologies, National Research Council, Segrate (MI), via Fratelli Cervi 93, 20090, Italy.

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http://dx.doi.org/10.1038/srep34841DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059623PMC
October 2016

SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans.

Mol Biosyst 2016 10;12(11):3447-3458

Instituto di Tecnologie Biomediche - Consiglio Nazionale delle Ricerche, via F.lli Cervi 93, 20090, Segrate, Milano, Italy.

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http://dx.doi.org/10.1039/c6mb00453aDOI Listing
October 2016

How computer science can help in understanding the 3D genome architecture.

Brief Bioinform 2016 09 3;17(5):733-44. Epub 2015 Oct 3.

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http://dx.doi.org/10.1093/bib/bbv085DOI Listing
September 2016

Further Insights in the Binding Mode of Selective Inhibitors to Human PDE4D Enzyme Combining Docking and Molecular Dynamics.

Mol Inform 2016 09 20;35(8-9):369-81. Epub 2016 Jun 20.

Department of Pharmacy, Section of Medicinal Chemistry, School of Medical and Pharmaceutical Sciences, University of Genoa, Viale Benedetto XV 3, 16132, Genova (GE, Italy.

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http://dx.doi.org/10.1002/minf.201501033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094559PMC
September 2016

Exome sequencing identifies variants in two genes encoding the LIM-proteins NRAP and FHL1 in an Italian patient with BAG3 myofibrillar myopathy.

J Muscle Res Cell Motil 2016 06 21;37(3):101-15. Epub 2016 Jul 21.

Department of Pathophysiology and Transplantation, Università degli Studi di Milano, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Centro Dino Ferrari, via F. Sforza, 35, 20122, Milan, Italy.

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http://dx.doi.org/10.1007/s10974-016-9451-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010835PMC
June 2016

A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.

BMC Bioinformatics 2016 Mar 2;17 Suppl 4:57. Epub 2016 Mar 2.

Institute for Biomedical Technologies, National Research Council (ITB-CNR), Segrate, MI, 20090, Italy.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/s12859-016-0909-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896236PMC
March 2016

An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back.

Sci Rep 2016 Mar 30;6:23474. Epub 2016 Mar 30.

Istituto di Chimica del Riconoscimento Molecolare - CNR, Milano, 20131 Italy.

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http://dx.doi.org/10.1038/srep23474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4812256PMC
March 2016

Molecular dynamics and docking simulation of a natural variant of Activated Protein C with impaired protease activity: implications for integrin-mediated antiseptic function.

J Biomol Struct Dyn 2015 20;33(1):85-92. Epub 2013 Nov 20.

a Istituto di Tecnologie Biomediche, Consiglio Nazionale delle Ricerche , 20090 Segrate , Italy.

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http://dx.doi.org/10.1080/07391102.2013.851033DOI Listing
January 2016

Methods for the integration of multi-omics data: mathematical aspects.

BMC Bioinformatics 2016 Jan 20;17 Suppl 2:15. Epub 2016 Jan 20.

Institute of Biomedical Technologies - CNR, Via Fratelli Cervi 93, Segrate MI, 20090, Italy.

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http://dx.doi.org/10.1186/s12859-015-0857-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959355PMC
January 2016

Segmenting the Human Genome into Isochores.

Evol Bioinform Online 2015 25;11:253-61. Epub 2015 Nov 25.

National Research Council, Institute for Biomedical Technologies, Segrate, Milan, Italy. ; Science Department, Rome 3 University, Rome, Italy.

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http://journals.sagepub.com/doi/10.4137/EBO.S27693
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http://dx.doi.org/10.4137/EBO.S27693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662427PMC
December 2015

Serum BPIFB4 levels classify health status in long-living individuals.

Immun Ageing 2015 15;12:27. Epub 2015 Dec 15.

IRCCS MultiMedica, 20138 Milan, Italy ; Dipartimento di Medicina e Chirurgia, Università degli Studi di Salerno, Via Giovanni Paolo II, 132, 84084 Fisciano, SA Italy.

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http://dx.doi.org/10.1186/s12979-015-0054-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678610PMC
December 2015

Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes.

Front Bioeng Biotechnol 2015 9;3:71. Epub 2015 Jun 9.

Institute for Biomedical Technologies, National Research Council , Segrate , Italy.

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http://dx.doi.org/10.3389/fbioe.2015.00071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460805PMC
June 2015

Parallel solutions for voxel-based simulations of reaction-diffusion systems.

Biomed Res Int 2014 12;2014:980501. Epub 2014 Jun 12.

Institute of Biomedical Technologies, National Research Council of Italy, Via Fratelli Cervi 93, 20090 Segrate, Milan, Italy.

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http://dx.doi.org/10.1155/2014/980501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4082941PMC
March 2015

G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.

Front Bioeng Biotechnol 2015 10;3:28. Epub 2015 Mar 10.

Institute for Biomedical Technologies, National Research Council , Milan , Italy.

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http://dx.doi.org/10.3389/fbioe.2015.00028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354384PMC
March 2015

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

Front Genet 2015 11;6:40. Epub 2015 Feb 11.

Bioinformatics Unit, Institute of Biomedical Technologies, Italian National Research Council Milan, Italy.

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http://dx.doi.org/10.3389/fgene.2015.00040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4324155PMC
February 2015

GPU-BSM: a GPU-based tool to map bisulfite-treated reads.

PLoS One 2014 19;9(5):e97277. Epub 2014 May 19.

Institute for Biomedical Technologies, National Research Council, Segrate (Mi), Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097277PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4026317PMC
December 2014

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

PLoS One 2013 19;8(9):e75146. Epub 2013 Sep 19.

Institute for Biomedical Technologies, National Research Council, Segrate (Milan), Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075146PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777921PMC
June 2014

Cloud infrastructures for in silico drug discovery: economic and practical aspects.

Biomed Res Int 2013 10;2013:138012. Epub 2013 Sep 10.

Institute of Applied Mathematics and Information Technologies, National Research Council of Italy, via de Marini 6, 16149 Genoa, Italy.

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http://dx.doi.org/10.1155/2013/138012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3782806PMC
June 2014

Homology modeling, docking studies and molecular dynamic simulations using graphical processing unit architecture to probe the type-11 phosphodiesterase catalytic site: a computational approach for the rational design of selective inhibitors.

Chem Biol Drug Des 2013 Dec 26;82(6):718-31. Epub 2013 Aug 26.

Dipartimento di Farmacia, Sezione di Chimica del Farmaco e del Prodotto Cosmetico, Università degli Studi di Genova, Viale Benedetto XV 3, 16132, Genova, Italy.

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http://dx.doi.org/10.1111/cbdd.12193DOI Listing
December 2013

Network-based analysis of omics with multi-objective optimization.

Mol Biosyst 2013 Dec 14;9(12):2971-80. Epub 2013 Oct 14.

Institute of Biomedical Technologies, National Research Council, Via F.lli Cervi 93, 20090 Segrate, MI, Italy.

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http://dx.doi.org/10.1039/c3mb70327dDOI Listing
December 2013

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.

BMC Bioinformatics 2013 14;14 Suppl 1:S9. Epub 2013 Jan 14.

Consiglio Nazionale delle Ricerche - Istituto di Tecnologie Biomediche (CNR-ITB), Via F,lli Cervi 93, 20090 Segrate (MI), Italy.

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http://dx.doi.org/10.1186/1471-2105-14-S1-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548692PMC
August 2013

Blood microRNA changes in depressed patients during antidepressant treatment.

Eur Neuropsychopharmacol 2013 Jul 25;23(7):602-11. Epub 2012 Aug 25.

Neuropsychopharmacology Unit, IRCCS Centro San Giovanni di Dio, Fatebenefratelli, Via Pilastroni 4, 25125 Brescia, Italy.

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http://dx.doi.org/10.1016/j.euroneuro.2012.06.013DOI Listing
July 2013

Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations.

PLoS Comput Biol 2012 27;8(12):e1002844. Epub 2012 Dec 27.

Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche (ITB-CNR), Segrate (Mi), Italy.

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http://dx.doi.org/10.1371/journal.pcbi.1002844DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531320PMC
May 2013

Static and dynamic interactions between GALK enzyme and known inhibitors: guidelines to design new drugs for galactosemic patients.

Eur J Med Chem 2013 May 27;63:423-34. Epub 2013 Feb 27.

Institute of Biomedical Technologies, Italian National Research Council, Via F.lli Cervi 93, 20090 Segrate, MI, Italy.

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https://linkinghub.elsevier.com/retrieve/pii/S02235234130012
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http://dx.doi.org/10.1016/j.ejmech.2013.02.021DOI Listing
May 2013

Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes.

J Bioinform Comput Biol 2013 Feb 28;11(1):1340002. Epub 2013 Jan 28.

Istituto Tecnologie Biomediche-Consiglio Nazionale Ricerche, Via F.lli Cervi 93, 20090 Segrate, Italy.

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http://dx.doi.org/10.1142/S0219720013400027DOI Listing
February 2013

Computational modeling of the metabolic States regulated by the kinase akt.

Front Physiol 2012 21;3:418. Epub 2012 Nov 21.

Institute for Biomedical Technologies, Consiglio Nazionale delle Ricerche Segrate Milano, Italy.

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http://dx.doi.org/10.3389/fphys.2012.00418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3502886PMC
November 2012

Literature retrieval and mining in bioinformatics: state of the art and challenges.

Adv Bioinformatics 2012 21;2012:573846. Epub 2012 Jun 21.

Institute for Biomedical Technologies, National Research Council, Via F.lli Cervi, 93, 20090 Segrate, Italy.

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http://dx.doi.org/10.1155/2012/573846DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388278PMC
August 2012

Systems biology of the metabolic network regulated by the Akt pathway.

Biotechnol Adv 2012 Jan-Feb;30(1):131-41. Epub 2011 Aug 12.

Institute for Biomedical Technologies, CNR, Segrate, Italy.

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http://dx.doi.org/10.1016/j.biotechadv.2011.08.004DOI Listing
July 2012

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii.

Proteins 2012 Apr 24;80(4):1154-66. Epub 2012 Jan 24.

Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Segrate (MI), Italy.

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http://doi.wiley.com/10.1002/prot.24016
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http://dx.doi.org/10.1002/prot.24016DOI Listing
April 2012

myMIR: a genome-wide microRNA targets identification and annotation tool.

Brief Bioinform 2011 Nov 22;12(6):588-600. Epub 2011 Oct 22.

Institute for Biomedical Technologies - National Research Council (ITB-CNR), Segrate, Italy.

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http://dx.doi.org/10.1093/bib/bbr062DOI Listing
November 2011

Image-based surface matching algorithm oriented to structural biology.

IEEE/ACM Trans Comput Biol Bioinform 2011 Jul-Aug;8(4):1004-16

Institute for Biomedical Technologies, Italian National Research Council, Segrate (Milan), Italy.

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http://ieeexplore.ieee.org/document/5440170/
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http://dx.doi.org/10.1109/TCBB.2010.21DOI Listing
September 2011

Homology modeling in tandem with 3D-QSAR analyses: a computational approach to depict the agonist binding site of the human CB2 receptor.

Eur J Med Chem 2011 Sep 23;46(9):4489-505. Epub 2011 Jul 23.

Dipartimento di Scienze Farmaceutiche, Università di Genova, Viale Benedetto XV n 3, 16132 Genova, Italy.

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http://dx.doi.org/10.1016/j.ejmech.2011.07.023DOI Listing
September 2011

Human aryl-hydrocarbon receptor and its interaction with dioxin and physiological ligands investigated by molecular modelling and docking simulations.

Biochem Biophys Res Commun 2011 Sep 17;413(2):176-81. Epub 2011 Aug 17.

Institute of Food Science (ISA), CNR, Via Roma 64, 83100 Avellino, Italy.

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http://dx.doi.org/10.1016/j.bbrc.2011.08.039DOI Listing
September 2011

Exploring the role of the phospholipid ligand in endothelial protein C receptor: a molecular dynamics study.

Proteins 2010 Sep;78(12):2679-90

Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Segrate (Mi), Italy.

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http://dx.doi.org/10.1002/prot.22782DOI Listing
September 2010

Calcium kidney stones are associated with a haplotype of the calcium-sensing receptor gene regulatory region.

Nephrol Dial Transplant 2010 Jul 12;25(7):2245-52. Epub 2010 Jan 12.

Nephrology and Dialysis Unit, Scientific Institute San Raffaele Hospital, Università Vita Salute University, Milan, Italy.

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http://dx.doi.org/10.1093/ndt/gfp760DOI Listing
July 2010

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.

Nucleic Acids Res 2010 Jul 16;38(Web Server issue):W262-7. Epub 2010 May 16.

Institute for Biomedical Technologies, National Research Council, via Fratelli Cervi 93, 20090 Segrate, Milano, Italy.

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http://dx.doi.org/10.1093/nar/gkq391DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896083PMC
July 2010

A multilevel data integration resource for breast cancer study.

BMC Syst Biol 2010 Jun 3;4:76. Epub 2010 Jun 3.

Institute for Biomedical Technologies, National Research Council, Segrate (Milan), Italy.

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http://dx.doi.org/10.1186/1752-0509-4-76DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2900226PMC
June 2010

SNPRanker: a tool for identification and scoring of SNPs associated to target genes.

J Integr Bioinform 2010 Mar 25;7(3). Epub 2010 Mar 25.

1Institute for Biomedical Technologies, National Research Council, via F lli Cervi 93, 20090 Segrate, MI, Italy.

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http://dx.doi.org/10.2390/biecoll-jib-2010-138DOI Listing
March 2010

Trends in modeling Biomedical Complex Systems.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:I1. Epub 2009 Oct 15.

Institute of Biomedical Technology, National Research Council, Milan, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S12-I1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762057PMC
October 2009

Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:S16. Epub 2009 Oct 15.

Institute for Biomedical Technology--Consiglio Nazionale delle Ricerche, Via Fratelli Cervi 93, Segrate, Milan, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S12-S16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762065PMC
October 2009

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:S2. Epub 2009 Oct 15.

Istituto Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Via Fratelli Cervi 93, Segrate (MI), Italy.

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http://www.biomedcentral.com/1471-2105/10/S12/S2
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http://dx.doi.org/10.1186/1471-2105-10-S12-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762067PMC
October 2009

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:S3. Epub 2009 Oct 15.

Institute for Biomedical Technologies-National Research Council (ITB-CNR), via Fratelli Cervi 93, Segrate (MI), Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S12-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762068PMC
October 2009

Identification of functionally related genes using data mining and data integration: a breast cancer case study.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:S8. Epub 2009 Oct 15.

Istituto Tecnologie Biomediche, Consiglio Nazionale Ricerche, Via Fratelli Cervi 93, Segrate (MI), Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S12-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762073PMC
October 2009

Virtual screening pipeline and ligand modelling for H5N1 neuraminidase.

Biochem Biophys Res Commun 2009 Jun 14;383(4):445-9. Epub 2009 Apr 14.

CNR-Institute for Biomedical Technologies, Via Fratelli Cervi 93, 20090 Segrate (MI), Italy.

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http://linkinghub.elsevier.com/retrieve/pii/S0006291X0900719
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http://dx.doi.org/10.1016/j.bbrc.2009.04.030DOI Listing
June 2009

The GENIUS Grid Portal and robot certificates: a new tool for e-Science.

BMC Bioinformatics 2009 Jun 16;10 Suppl 6:S21. Epub 2009 Jun 16.

Istituto Nazionale di Fisica Nucleare, Sezione di Catania, Via S, Sofia 64, I-95123 Catania, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S6-S21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697645PMC
June 2009

Mining the bovine genome with the "Bovine SNP Retriever".

J Hered 2008 Nov-Dec;99(6):696-8. Epub 2008 Jun 9.

Parco Tecnologico Padano, Via Einstein-Località Cascina Codazza, 26900 Lodi, Italy.

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http://dx.doi.org/10.1093/jhered/esn044DOI Listing
November 2008

An unusal distribution of 6-nt sequences near the transcription start site.

J Integr Bioinform 2008 Aug 25;5(2). Epub 2008 Aug 25.

Department of Biochemistry, University of Hyderabad, Hyderabad 500 046, INDIA. c

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http://dx.doi.org/10.2390/biecoll-jib-2008-103DOI Listing
August 2008

Ontology-based, Tissue MicroArray oriented, image centered tissue bank.

BMC Bioinformatics 2008 Apr 25;9 Suppl 4:S4. Epub 2008 Apr 25.

Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Segrate (Milan) 20090, Italy.

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http://dx.doi.org/10.1186/1471-2105-9-S4-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367631PMC
April 2008

SNPLims: a data management system for genome wide association studies.

BMC Bioinformatics 2008 Mar 26;9 Suppl 2:S13. Epub 2008 Mar 26.

Consorzio Interuniversitario Lombardo per l'Elaborazione Automatica, Via Sanzio Raffaello 4, 20090 Segrate (MI), Italy.

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http://dx.doi.org/10.1186/1471-2105-9-S2-S13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323662PMC
March 2008

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

BMC Bioinformatics 2008 Mar 26;9 Suppl 2:S9. Epub 2008 Mar 26.

Parco Tecnologico Padano, Via Einstein - Località Cascina Codazza, Lodi, 26900, Italy.

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http://dx.doi.org/10.1186/1471-2105-9-S2-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323672PMC
March 2008

The cell cycle DB: a systems biology approach to cell cycle analysis.

Nucleic Acids Res 2008 Jan 26;36(Database issue):D641-5. Epub 2007 Dec 26.

Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, via F.lli Cervi 93, Segrate, Milano, Italy.

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http://dx.doi.org/10.1093/nar/gkm873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238882PMC
January 2008

Evaluation of a grid based molecular dynamics approach for polypeptide simulations.

IEEE Trans Nanobioscience 2007 Sep;6(3):229-34

Institute for Biomedical Technology, National Resource Council, 20090 Segrate (Milan), Italy.

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September 2007

Grid methodology for identifying co-regulated genes and transcription factor binding sites.

IEEE Trans Nanobioscience 2007 Jun;6(2):162-7

University of Cambridge Computer Laboratory, Cambridge CB3 OFD, UK.

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June 2007