Lucia Conde

Lucia Conde

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Lucia Conde

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Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.

Genet Epidemiol 2019 Aug 13. Epub 2019 Aug 13.

Center for Neuroengineering and Therapeutics, Department of Neurology, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1002/gepi.22242DOI Listing
August 2019

Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenström macroglobulinemia.

Nat Commun 2018 10 10;9(1):4182. Epub 2018 Oct 10.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, 20892, MD, USA.

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http://dx.doi.org/10.1038/s41467-018-06541-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180091PMC
October 2018

HLA Class I and II Diversity Contributes to the Etiologic Heterogeneity of Non-Hodgkin Lymphoma Subtypes.

Cancer Res 2018 07 7;78(14):4086-4096. Epub 2018 May 7.

Department of Hematology and Medical Oncology, Emory University School of Medicine, Atlanta, Georgia.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-2900DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065509PMC
July 2018

Lupus-related single nucleotide polymorphisms and risk of diffuse large B-cell lymphoma.

Authors:
Sasha Bernatsky Héctor A Velásquez García John J Spinelli Patrick Gaffney Karin E Smedby Rosalind Ramsey-Goldman Sophia S Wang Hans-Olov Adami Demetrius Albanes Emanuele Angelucci Stephen M Ansell Yan W Asmann Nikolaus Becker Yolanda Benavente Sonja I Berndt Kimberly A Bertrand Brenda M Birmann Heiner Boeing Paolo Boffetta Paige M Bracci Paul Brennan Angela R Brooks-Wilson James R Cerhan Stephen J Chanock Jacqueline Clavel Lucia Conde Karen H Cotenbader David G Cox Wendy Cozen Simon Crouch Anneclaire J De Roos Silvia de Sanjose Simonetta Di Lollo W Ryan Diver Ahmet Dogan Lenka Foretova Hervé Ghesquières Graham G Giles Bengt Glimelius Thomas M Habermann Corinne Haioun Patricia Hartge Henrik Hjalgrim Theodore R Holford Elizabeth A Holly Rebecca D Jackson Rudolph Kaaks Eleanor Kane Rachel S Kelly Robert J Klein Peter Kraft Anne Kricker Qing Lan Charles Lawrence Mark Liebow Tracy Lightfoot Brian K Link Marc Maynadie James McKay Mads Melbye Thierry J Molina Alain Monnereau Lindsay M Morton Alexandra Nieters Kari E North Anne J Novak Kenneth Offit Mark P Purdue Marco Rais Jacques Riby Eve Roman Nathaniel Rothman Gilles Salles Gianluca Severi Richard K Severson Christine F Skibola Susan L Slager Alex Smith Martyn T Smith Melissa C Southey Anthony Staines Lauren R Teras Carrie A Thompson Hervé Tilly Lesley F Tinker Anne Tjonneland Jenny Turner Claire M Vajdic Roel C H Vermeulen Joseph Vijai Paolo Vineis Jarmo Virtamo Zhaoming Wang Stephanie Weinstein Thomas E Witzig Andrew Zelenetz Anne Zeleniuch-Jacquotte Yawei Zhang Tongzhang Zheng Mariagrazia Zucca Ann E Clarke

Lupus Sci Med 2017 12;4(1):e000187. Epub 2017 Nov 12.

Division of Rheumatology, University of Calgary, Calgary, Canada.

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http://dx.doi.org/10.1136/lupus-2016-000187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5715504PMC
November 2017

Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.

Nat Commun 2017 02 6;8:14175. Epub 2017 Feb 6.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1038/ncomms14175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5303820PMC
February 2017

A Fucus vesiculosus extract inhibits estrogen receptor activation and induces cell death in female cancer cell lines.

BMC Complement Altern Med 2016 May 28;16:151. Epub 2016 May 28.

Department of Epidemiology, University of Alabama at Birmingham, 1665 University Boulevard, Birmingham, AL, 35294, USA.

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http://dx.doi.org/10.1186/s12906-016-1129-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4884380PMC
May 2016

Genetically predicted longer telomere length is associated with increased risk of B-cell lymphoma subtypes.

Authors:
Mitchell J Machiela Qing Lan Susan L Slager Roel C H Vermeulen Lauren R Teras Nicola J Camp James R Cerhan John J Spinelli Sophia S Wang Alexandra Nieters Joseph Vijai Meredith Yeager Zhaoming Wang Hervé Ghesquières James McKay Lucia Conde Paul I W de Bakker David G Cox Laurie Burdett Alain Monnereau Christopher R Flowers Anneclaire J De Roos Angela R Brooks-Wilson Graham G Giles Mads Melbye Jian Gu Rebecca D Jackson Eleanor Kane Mark P Purdue Claire M Vajdic Demetrius Albanes Rachel S Kelly Mariagrazia Zucca Kimberly A Bertrand Anne Zeleniuch-Jacquotte Charles Lawrence Amy Hutchinson Degui Zhi Thomas M Habermann Brian K Link Anne J Novak Ahmet Dogan Yan W Asmann Mark Liebow Carrie A Thompson Stephen M Ansell Thomas E Witzig Hervé Tilly Corinne Haioun Thierry J Molina Henrik Hjalgrim Bengt Glimelius Hans-Olov Adami Göran Roos Paige M Bracci Jacques Riby Martyn T Smith Elizabeth A Holly Wendy Cozen Patricia Hartge Lindsay M Morton Richard K Severson Lesley F Tinker Kari E North Nikolaus Becker Yolanda Benavente Paolo Boffetta Paul Brennan Lenka Foretova Marc Maynadie Anthony Staines Tracy Lightfoot Simon Crouch Alex Smith Eve Roman W Ryan Diver Kenneth Offit Andrew Zelenetz Robert J Klein Danylo J Villano Tongzhang Zheng Yawei Zhang Theodore R Holford Jenny Turner Melissa C Southey Jacqueline Clavel Jarmo Virtamo Stephanie Weinstein Elio Riboli Paolo Vineis Rudolph Kaaks Heiner Boeing Anne Tjønneland Emanuele Angelucci Simonetta Di Lollo Marco Rais Immaculata De Vivo Edward Giovannucci Peter Kraft Jinyan Huang Baoshan Ma Yuanqing Ye Brian C H Chiu Liming Liang Ju-Hyun Park Charles C Chung Dennis D Weisenburger Joseph F Fraumeni Gilles Salles Martha Glenn Lisa Cannon-Albright Karen Curtin Xifeng Wu Karin E Smedby Silvia de Sanjose Christine F Skibola Sonja I Berndt Brenda M Birmann Stephen J Chanock Nathaniel Rothman

Hum Mol Genet 2016 Apr 9;25(8):1663-76. Epub 2016 Feb 9.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, USA.

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http://hmg.oxfordjournals.org/content/early/2016/02/22/hmg.d
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http://www.hmg.oxfordjournals.org/lookup/doi/10.1093/hmg/ddw
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http://dx.doi.org/10.1093/hmg/ddw027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4854019PMC
April 2016

Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.

Authors:
Sonja I Berndt Nicola J Camp Christine F Skibola Joseph Vijai Zhaoming Wang Jian Gu Alexandra Nieters Rachel S Kelly Karin E Smedby Alain Monnereau Wendy Cozen Angela Cox Sophia S Wang Qing Lan Lauren R Teras Moara Machado Meredith Yeager Angela R Brooks-Wilson Patricia Hartge Mark P Purdue Brenda M Birmann Claire M Vajdic Pierluigi Cocco Yawei Zhang Graham G Giles Anne Zeleniuch-Jacquotte Charles Lawrence Rebecca Montalvan Laurie Burdett Amy Hutchinson Yuanqing Ye Timothy G Call Tait D Shanafelt Anne J Novak Neil E Kay Mark Liebow Julie M Cunningham Cristine Allmer Henrik Hjalgrim Hans-Olov Adami Mads Melbye Bengt Glimelius Ellen T Chang Martha Glenn Karen Curtin Lisa A Cannon-Albright W Ryan Diver Brian K Link George J Weiner Lucia Conde Paige M Bracci Jacques Riby Donna K Arnett Degui Zhi Justin M Leach Elizabeth A Holly Rebecca D Jackson Lesley F Tinker Yolanda Benavente Núria Sala Delphine Casabonne Nikolaus Becker Paolo Boffetta Paul Brennan Lenka Foretova Marc Maynadie James McKay Anthony Staines Kari G Chaffee Sara J Achenbach Celine M Vachon Lynn R Goldin Sara S Strom Jose F Leis J Brice Weinberg Neil E Caporaso Aaron D Norman Anneclaire J De Roos Lindsay M Morton Richard K Severson Elio Riboli Paolo Vineis Rudolph Kaaks Giovanna Masala Elisabete Weiderpass María-Dolores Chirlaque Roel C H Vermeulen Ruth C Travis Melissa C Southey Roger L Milne Demetrius Albanes Jarmo Virtamo Stephanie Weinstein Jacqueline Clavel Tongzhang Zheng Theodore R Holford Danylo J Villano Ann Maria John J Spinelli Randy D Gascoyne Joseph M Connors Kimberly A Bertrand Edward Giovannucci Peter Kraft Anne Kricker Jenny Turner Maria Grazia Ennas Giovanni M Ferri Lucia Miligi Liming Liang Baoshan Ma Jinyan Huang Simon Crouch Ju-Hyun Park Nilanjan Chatterjee Kari E North John A Snowden Josh Wright Joseph F Fraumeni Kenneth Offit Xifeng Wu Silvia de Sanjose James R Cerhan Stephen J Chanock Nathaniel Rothman Susan L Slager

Nat Commun 2016 Mar 9;7:10933. Epub 2016 Mar 9.

Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1038/ncomms10933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4786871PMC
March 2016

The potential relevance of the endocannabinoid, 2-arachidonoylglycerol, in diffuse large B-cell lymphoma.

Oncoscience 2016 30;3(1):31-41. Epub 2016 Jan 30.

Department of Epidemiology, School of Public Health, Comprehensive Cancer Center, University of Alabama at Birmingham, AL, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751914PMC
http://dx.doi.org/10.18632/oncoscience.289DOI Listing
March 2016

Copy number variation analysis on a non-Hodgkin lymphoma case-control study identifies an 11q25 duplication associated with diffuse large B-cell lymphoma.

PLoS One 2014 18;9(8):e105382. Epub 2014 Aug 18.

Department of Epidemiology, School of Public Health and Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105382PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136881PMC
December 2015

Analysis of Heritability and Shared Heritability Based on Genome-Wide Association Studies for Thirteen Cancer Types.

Authors:
Joshua N Sampson William A Wheeler Meredith Yeager Orestis Panagiotou Zhaoming Wang Sonja I Berndt Qing Lan Christian C Abnet Laufey T Amundadottir Jonine D Figueroa Maria Teresa Landi Lisa Mirabello Sharon A Savage Philip R Taylor Immaculata De Vivo Katherine A McGlynn Mark P Purdue Preetha Rajaraman Hans-Olov Adami Anders Ahlbom Demetrius Albanes Maria Fernanda Amary She-Juan An Ulrika Andersson Gerald Andriole Irene L Andrulis Emanuele Angelucci Stephen M Ansell Cecilia Arici Bruce K Armstrong Alan A Arslan Melissa A Austin Dalsu Baris Donald A Barkauskas Bryan A Bassig Nikolaus Becker Yolanda Benavente Simone Benhamou Christine Berg David Van Den Berg Leslie Bernstein Kimberly A Bertrand Brenda M Birmann Amanda Black Heiner Boeing Paolo Boffetta Marie-Christine Boutron-Ruault Paige M Bracci Louise Brinton Angela R Brooks-Wilson H Bas Bueno-de-Mesquita Laurie Burdett Julie Buring Mary Ann Butler Qiuyin Cai Geraldine Cancel-Tassin Federico Canzian Alfredo Carrato Tania Carreon Angela Carta John K C Chan Ellen T Chang Gee-Chen Chang I-Shou Chang Jiang Chang Jenny Chang-Claude Chien-Jen Chen Chih-Yi Chen Chu Chen Chung-Hsing Chen Constance Chen Hongyan Chen Kexin Chen Kuan-Yu Chen Kun-Chieh Chen Ying Chen Ying-Hsiang Chen Yi-Song Chen Yuh-Min Chen Li-Hsin Chien María-Dolores Chirlaque Jin Eun Choi Yi Young Choi Wong-Ho Chow Charles C Chung Jacqueline Clavel Françoise Clavel-Chapelon Pierluigi Cocco Joanne S Colt Eva Comperat Lucia Conde Joseph M Connors David Conti Victoria K Cortessis Michelle Cotterchio Wendy Cozen Simon Crouch Marta Crous-Bou Olivier Cussenot Faith G Davis Ti Ding W Ryan Diver Miren Dorronsoro Laure Dossus Eric J Duell Maria Grazia Ennas Ralph L Erickson Maria Feychting Adrienne M Flanagan Lenka Foretova Joseph F Fraumeni Neal D Freedman Laura E Beane Freeman Charles Fuchs Manuela Gago-Dominguez Steven Gallinger Yu-Tang Gao Susan M Gapstur Montserrat Garcia-Closas Reina García-Closas Randy D Gascoyne Julie Gastier-Foster Mia M Gaudet J Michael Gaziano Carol Giffen Graham G Giles Edward Giovannucci Bengt Glimelius Michael Goggins Nalan Gokgoz Alisa M Goldstein Richard Gorlick Myron Gross Robert Grubb Jian Gu Peng Guan Marc Gunter Huan Guo Thomas M Habermann Christopher A Haiman Dina Halai Goran Hallmans Manal Hassan Claudia Hattinger Qincheng He Xingzhou He Kathy Helzlsouer Brian Henderson Roger Henriksson Henrik Hjalgrim Judith Hoffman-Bolton Chancellor Hohensee Theodore R Holford Elizabeth A Holly Yun-Chul Hong Robert N Hoover Pamela L Horn-Ross G M Monawar Hosain H Dean Hosgood Chin-Fu Hsiao Nan Hu Wei Hu Zhibin Hu Ming-Shyan Huang Jose-Maria Huerta Jen-Yu Hung Amy Hutchinson Peter D Inskip Rebecca D Jackson Eric J Jacobs Mazda Jenab Hyo-Sung Jeon Bu-Tian Ji Guangfu Jin Li Jin Christoffer Johansen Alison Johnson Yoo Jin Jung Rudolph Kaaks Aruna Kamineni Eleanor Kane Chang Hyun Kang Margaret R Karagas Rachel S Kelly Kay-Tee Khaw Christopher Kim Hee Nam Kim Jin Hee Kim Jun Suk Kim Yeul Hong Kim Young Tae Kim Young-Chul Kim Cari M Kitahara Alison P Klein Robert J Klein Manolis Kogevinas Takashi Kohno Laurence N Kolonel Charles Kooperberg Anne Kricker Vittorio Krogh Hideo Kunitoh Robert C Kurtz Sun-Seog Kweon Andrea LaCroix Charles Lawrence Fernando Lecanda Victor Ho Fun Lee Donghui Li Haixin Li Jihua Li Yao-Jen Li Yuqing Li Linda M Liao Mark Liebow Tracy Lightfoot Wei-Yen Lim Chien-Chung Lin Dongxin Lin Sara Lindstrom Martha S Linet Brian K Link Chenwei Liu Jianjun Liu Li Liu Börje Ljungberg Josep Lloreta Simonetta Di Lollo Daru Lu Eiluv Lund Nuria Malats Satu Mannisto Loic Le Marchand Neyssa Marina Giovanna Masala Giuseppe Mastrangelo Keitaro Matsuo Marc Maynadie James McKay Roberta McKean-Cowdin Mads Melbye Beatrice S Melin Dominique S Michaud Tetsuya Mitsudomi Alain Monnereau Rebecca Montalvan Lee E Moore Lotte Maxild Mortensen Alexandra Nieters Kari E North Anne J Novak Ann L Oberg Kenneth Offit In-Jae Oh Sara H Olson Domenico Palli William Pao In Kyu Park Jae Yong Park Kyong Hwa Park Ana Patiño-Garcia Sofia Pavanello Petra H M Peeters Reury-Perng Perng Ulrike Peters Gloria M Petersen Piero Picci Malcolm C Pike Stefano Porru Jennifer Prescott Ludmila Prokunina-Olsson Biyun Qian You-Lin Qiao Marco Rais Elio Riboli Jacques Riby Harvey A Risch Cosmeri Rizzato Rebecca Rodabough Eve Roman Morgan Roupret Avima M Ruder Silvia de Sanjose Ghislaine Scelo Alan Schned Fredrick Schumacher Kendra Schwartz Molly Schwenn Katia Scotlandi Adeline Seow Consol Serra Massimo Serra Howard D Sesso Veronica Wendy Setiawan Gianluca Severi Richard K Severson Tait D Shanafelt Hongbing Shen Wei Shen Min-Ho Shin Kouya Shiraishi Xiao-Ou Shu Afshan Siddiq Luis Sierrasesúmaga Alan Dart Loon Sihoe Christine F Skibola Alex Smith Martyn T Smith Melissa C Southey John J Spinelli Anthony Staines Meir Stampfer Marianna C Stern Victoria L Stevens Rachael S Stolzenberg-Solomon Jian Su Wu-Chou Su Malin Sund Jae Sook Sung Sook Whan Sung Wen Tan Wei Tang Adonina Tardón David Thomas Carrie A Thompson Lesley F Tinker Roberto Tirabosco Anne Tjønneland Ruth C Travis Dimitrios Trichopoulos Fang-Yu Tsai Ying-Huang Tsai Margaret Tucker Jenny Turner Claire M Vajdic Roel C H Vermeulen Danylo J Villano Paolo Vineis Jarmo Virtamo Kala Visvanathan Jean Wactawski-Wende Chaoyu Wang Chih-Liang Wang Jiu-Cun Wang Junwen Wang Fusheng Wei Elisabete Weiderpass George J Weiner Stephanie Weinstein Nicolas Wentzensen Emily White Thomas E Witzig Brian M Wolpin Maria Pik Wong Chen Wu Guoping Wu Junjie Wu Tangchun Wu Wei Wu Xifeng Wu Yi-Long Wu Jay S Wunder Yong-Bing Xiang Jun Xu Ping Xu Pan-Chyr Yang Tsung-Ying Yang Yuanqing Ye Zhihua Yin Jun Yokota Ho-Il Yoon Chong-Jen Yu Herbert Yu Kai Yu Jian-Min Yuan Andrew Zelenetz Anne Zeleniuch-Jacquotte Xu-Chao Zhang Yawei Zhang Xueying Zhao Zhenhong Zhao Hong Zheng Tongzhang Zheng Wei Zheng Baosen Zhou Meng Zhu Mariagrazia Zucca Simina M Boca James R Cerhan Giovanni M Ferri Patricia Hartge Chao Agnes Hsiung Corrado Magnani Lucia Miligi Lindsay M Morton Karin E Smedby Lauren R Teras Joseph Vijai Sophia S Wang Paul Brennan Neil E Caporaso David J Hunter Peter Kraft Nathaniel Rothman Debra T Silverman Susan L Slager Stephen J Chanock Nilanjan Chatterjee

J Natl Cancer Inst 2015 Dec 12;107(12):djv279. Epub 2015 Oct 12.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD (JNS, OP, SIB, QL, CCA, LTA, JDF, MTL, LM, SAS, PRT, KAM, PR, DA, DB, BAB, AB, LBr, WHC, CCC, JSC, JFFJr, NDF, LEBF, MGC, AMG, RNH, NH, WH, PDI, BTJ, CK, CMK, LML, MSL, LEM, LPO, RSSS, WeiT, MT, CWa, SW, NW, KY, PH, LMM, NEC, NR, DTS, SJC, NC); Information Management Services, Silver Spring, MD (WAW, CG); Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Gaithersburg, MD (MY, ZW, LBu, AH, CLi); Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA (IDV, KAB, BMB, CoC, MCB, CF, EG, SL, JP, MSt, DJH); Department of Epidemiology, Harvard School of Public Health, Boston, MA (IDV, OA, KAB, CoC, MCB, EG, RSK, SL, JP, HDS, MSt, DTr, DJH, PK); Ontario Health Study, Toronto, Ontario, Canada (MPP); Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden (HOA, EWe); Unit of Epidemiology, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden (AA, MF); UCL Cancer Institute, London, UK (MFA, AMF, DH); Royal National Orthopaedic Hospital NHS Trust, Stanmore, Middlesex, UK (MFA, AMF, DH, RT); Guangdong Lung Cancer Institute, Guangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong General Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China (SJA, JS, YLW, XCZ); Department of Radiation Sciences, Oncology, Umea University, Umea, Sweden (UA, RH, BSM); Division of Urologic Surgery, Washington University School of Medicine, Saint Louis, MO (GAJr, RGIII); Litwin Centre for Cancer Genetics, University of Toronto, Ontario, Canada (ILA, NG, JSW); Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada (ILA, SG, NG, JSW); Hematology Unit, Ospedale Oncologico di Riferimento Regionale A. Businco, Cagliari, Italy (EA); Department of Medicin

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http://kooperberg.fhcrc.org/papers/2015sampson.pdf
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http://jnci.oxfordjournals.org/lookup/doi/10.1093/jnci/djv27
Publisher Site
http://dx.doi.org/10.1093/jnci/djv279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4806328PMC
December 2015

A genome-wide association study of marginal zone lymphoma shows association to the HLA region.

Authors:
Joseph Vijai Zhaoming Wang Sonja I Berndt Christine F Skibola Susan L Slager Silvia de Sanjose Mads Melbye Bengt Glimelius Paige M Bracci Lucia Conde Brenda M Birmann Sophia S Wang Angela R Brooks-Wilson Qing Lan Paul I W de Bakker Roel C H Vermeulen Carol Portlock Stephen M Ansell Brian K Link Jacques Riby Kari E North Jian Gu Henrik Hjalgrim Wendy Cozen Nikolaus Becker Lauren R Teras John J Spinelli Jenny Turner Yawei Zhang Mark P Purdue Graham G Giles Rachel S Kelly Anne Zeleniuch-Jacquotte Maria Grazia Ennas Alain Monnereau Kimberly A Bertrand Demetrius Albanes Tracy Lightfoot Meredith Yeager Charles C Chung Laurie Burdett Amy Hutchinson Charles Lawrence Rebecca Montalvan Liming Liang Jinyan Huang Baoshan Ma Danylo J Villano Ann Maria Marina Corines Tinu Thomas Anne J Novak Ahmet Dogan Mark Liebow Carrie A Thompson Thomas E Witzig Thomas M Habermann George J Weiner Martyn T Smith Elizabeth A Holly Rebecca D Jackson Lesley F Tinker Yuanqing Ye Hans-Olov Adami Karin E Smedby Anneclaire J De Roos Patricia Hartge Lindsay M Morton Richard K Severson Yolanda Benavente Paolo Boffetta Paul Brennan Lenka Foretova Marc Maynadie James McKay Anthony Staines W Ryan Diver Claire M Vajdic Bruce K Armstrong Anne Kricker Tongzhang Zheng Theodore R Holford Gianluca Severi Paolo Vineis Giovanni M Ferri Rosalia Ricco Lucia Miligi Jacqueline Clavel Edward Giovannucci Peter Kraft Jarmo Virtamo Alex Smith Eleanor Kane Eve Roman Brian C H Chiu Joseph F Fraumeni Xifeng Wu James R Cerhan Kenneth Offit Stephen J Chanock Nathaniel Rothman Alexandra Nieters

Nat Commun 2015 Jan 8;6:5751. Epub 2015 Jan 8.

Center For Chronic Immunodeficiency, University Medical Center Freiburg, Freiburg 79108, Germany.

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http://dx.doi.org/10.1038/ncomms6751DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287989PMC
January 2015

Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.

Authors:
James R Cerhan Sonja I Berndt Joseph Vijai Hervé Ghesquières James McKay Sophia S Wang Zhaoming Wang Meredith Yeager Lucia Conde Paul I W de Bakker Alexandra Nieters David Cox Laurie Burdett Alain Monnereau Christopher R Flowers Anneclaire J De Roos Angela R Brooks-Wilson Qing Lan Gianluca Severi Mads Melbye Jian Gu Rebecca D Jackson Eleanor Kane Lauren R Teras Mark P Purdue Claire M Vajdic John J Spinelli Graham G Giles Demetrius Albanes Rachel S Kelly Mariagrazia Zucca Kimberly A Bertrand Anne Zeleniuch-Jacquotte Charles Lawrence Amy Hutchinson Degui Zhi Thomas M Habermann Brian K Link Anne J Novak Ahmet Dogan Yan W Asmann Mark Liebow Carrie A Thompson Stephen M Ansell Thomas E Witzig George J Weiner Amelie S Veron Diana Zelenika Hervé Tilly Corinne Haioun Thierry Jo Molina Henrik Hjalgrim Bengt Glimelius Hans-Olov Adami Paige M Bracci Jacques Riby Martyn T Smith Elizabeth A Holly Wendy Cozen Patricia Hartge Lindsay M Morton Richard K Severson Lesley F Tinker Kari E North Nikolaus Becker Yolanda Benavente Paolo Boffetta Paul Brennan Lenka Foretova Marc Maynadie Anthony Staines Tracy Lightfoot Simon Crouch Alex Smith Eve Roman W Ryan Diver Kenneth Offit Andrew Zelenetz Robert J Klein Danylo J Villano Tongzhang Zheng Yawei Zhang Theodore R Holford Anne Kricker Jenny Turner Melissa C Southey Jacqueline Clavel Jarmo Virtamo Stephanie Weinstein Elio Riboli Paolo Vineis Rudolph Kaaks Dimitrios Trichopoulos Roel C H Vermeulen Heiner Boeing Anne Tjonneland Emanuele Angelucci Simonetta Di Lollo Marco Rais Brenda M Birmann Francine Laden Edward Giovannucci Peter Kraft Jinyan Huang Baoshan Ma Yuanqing Ye Brian C H Chiu Joshua Sampson Liming Liang Ju-Hyun Park Charles C Chung Dennis D Weisenburger Nilanjan Chatterjee Joseph F Fraumeni Susan L Slager Xifeng Wu Silvia de Sanjose Karin E Smedby Gilles Salles Christine F Skibola Nathaniel Rothman Stephen J Chanock

Nat Genet 2014 Nov 28;46(11):1233-8. Epub 2014 Sep 28.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/ng.3105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213349PMC
November 2014

Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.

Authors:
Christine F Skibola Sonja I Berndt Joseph Vijai Lucia Conde Zhaoming Wang Meredith Yeager Paul I W de Bakker Brenda M Birmann Claire M Vajdic Jia-Nee Foo Paige M Bracci Roel C H Vermeulen Susan L Slager Silvia de Sanjose Sophia S Wang Martha S Linet Gilles Salles Qing Lan Gianluca Severi Henrik Hjalgrim Tracy Lightfoot Mads Melbye Jian Gu Hervé Ghesquières Brian K Link Lindsay M Morton Elizabeth A Holly Alex Smith Lesley F Tinker Lauren R Teras Anne Kricker Nikolaus Becker Mark P Purdue John J Spinelli Yawei Zhang Graham G Giles Paolo Vineis Alain Monnereau Kimberly A Bertrand Demetrius Albanes Anne Zeleniuch-Jacquotte Attilio Gabbas Charles C Chung Laurie Burdett Amy Hutchinson Charles Lawrence Rebecca Montalvan Liming Liang Jinyan Huang Baoshan Ma Jianjun Liu Hans-Olov Adami Bengt Glimelius Yuanqing Ye Grzegorz S Nowakowski Ahmet Dogan Carrie A Thompson Thomas M Habermann Anne J Novak Mark Liebow Thomas E Witzig George J Weiner Maryjean Schenk Patricia Hartge Anneclaire J De Roos Wendy Cozen Degui Zhi Nicholas K Akers Jacques Riby Martyn T Smith Mortimer Lacher Danylo J Villano Ann Maria Eve Roman Eleanor Kane Rebecca D Jackson Kari E North W Ryan Diver Jenny Turner Bruce K Armstrong Yolanda Benavente Paolo Boffetta Paul Brennan Lenka Foretova Marc Maynadie Anthony Staines James McKay Angela R Brooks-Wilson Tongzhang Zheng Theodore R Holford Saioa Chamosa Rudolph Kaaks Rachel S Kelly Bodil Ohlsson Ruth C Travis Elisabete Weiderpass Jacqueline Clavel Edward Giovannucci Peter Kraft Jarmo Virtamo Patrizio Mazza Pierluigi Cocco Maria Grazia Ennas Brian C H Chiu Joseph F Fraumeni Alexandra Nieters Kenneth Offit Xifeng Wu James R Cerhan Karin E Smedby Stephen J Chanock Nathaniel Rothman

Am J Hum Genet 2014 Oct;95(4):462-71

Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.ajhg.2014.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4185120PMC
October 2014

eALPS: estimating abundance levels in pooled sequencing using available genotyping data.

J Comput Biol 2013 Nov 21;20(11):861-77. Epub 2013 Oct 21.

1 The Blavatnik School of Computer Science, Tel-Aviv University , Tel Aviv, Israel .

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http://dx.doi.org/10.1089/cmb.2013.0105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4013753PMC
November 2013

Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.

Authors:
Sonja I Berndt Christine F Skibola Vijai Joseph Nicola J Camp Alexandra Nieters Zhaoming Wang Wendy Cozen Alain Monnereau Sophia S Wang Rachel S Kelly Qing Lan Lauren R Teras Nilanjan Chatterjee Charles C Chung Meredith Yeager Angela R Brooks-Wilson Patricia Hartge Mark P Purdue Brenda M Birmann Bruce K Armstrong Pierluigi Cocco Yawei Zhang Gianluca Severi Anne Zeleniuch-Jacquotte Charles Lawrence Laurie Burdette Jeffrey Yuenger Amy Hutchinson Kevin B Jacobs Timothy G Call Tait D Shanafelt Anne J Novak Neil E Kay Mark Liebow Alice H Wang Karin E Smedby Hans-Olov Adami Mads Melbye Bengt Glimelius Ellen T Chang Martha Glenn Karen Curtin Lisa A Cannon-Albright Brandt Jones W Ryan Diver Brian K Link George J Weiner Lucia Conde Paige M Bracci Jacques Riby Elizabeth A Holly Martyn T Smith Rebecca D Jackson Lesley F Tinker Yolanda Benavente Nikolaus Becker Paolo Boffetta Paul Brennan Lenka Foretova Marc Maynadie James McKay Anthony Staines Kari G Rabe Sara J Achenbach Celine M Vachon Lynn R Goldin Sara S Strom Mark C Lanasa Logan G Spector Jose F Leis Julie M Cunningham J Brice Weinberg Vicki A Morrison Neil E Caporaso Aaron D Norman Martha S Linet Anneclaire J De Roos Lindsay M Morton Richard K Severson Elio Riboli Paolo Vineis Rudolph Kaaks Dimitrios Trichopoulos Giovanna Masala Elisabete Weiderpass María-Dolores Chirlaque Roel C H Vermeulen Ruth C Travis Graham G Giles Demetrius Albanes Jarmo Virtamo Stephanie Weinstein Jacqueline Clavel Tongzhang Zheng Theodore R Holford Kenneth Offit Andrew Zelenetz Robert J Klein John J Spinelli Kimberly A Bertrand Francine Laden Edward Giovannucci Peter Kraft Anne Kricker Jenny Turner Claire M Vajdic Maria Grazia Ennas Giovanni M Ferri Lucia Miligi Liming Liang Joshua Sampson Simon Crouch Ju-Hyun Park Kari E North Angela Cox John A Snowden Josh Wright Angel Carracedo Carlos Lopez-Otin Silvia Bea Itziar Salaverria David Martin-Garcia Elias Campo Joseph F Fraumeni Silvia de Sanjose Henrik Hjalgrim James R Cerhan Stephen J Chanock Nathaniel Rothman Susan L Slager

Nat Genet 2013 Aug 16;45(8):868-76. Epub 2013 Jun 16.

Division of Cancer Epidemiology and Genetics, National Cancer Institute (NCI), Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/ng.2652DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729927PMC
August 2013

Integrating GWAS and expression data for functional characterization of disease-associated SNPs: an application to follicular lymphoma.

Am J Hum Genet 2013 Jan 13;92(1):126-30. Epub 2012 Dec 13.

Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, Berkeley, CA 94720-7360, USA.

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http://dx.doi.org/10.1016/j.ajhg.2012.11.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3542469PMC
January 2013

A meta-analysis of genome-wide association studies of follicular lymphoma.

BMC Genomics 2012 Oct 1;13:516. Epub 2012 Oct 1.

School of Public Health, Division of Environmental Health Sciences, University of California, Berkeley, 94720, USA.

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http://dx.doi.org/10.1186/1471-2164-13-516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3534234PMC
October 2012

Post-GWAS functional characterization of susceptibility variants for chronic lymphocytic leukemia.

PLoS One 2012 3;7(1):e29632. Epub 2012 Jan 3.

Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029632PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3250464PMC
May 2012

A search for overlapping genetic susceptibility loci between non-Hodgkin lymphoma and autoimmune diseases.

Genomics 2011 Jul 23;98(1):9-14. Epub 2011 Mar 23.

Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S08887543110007
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http://dx.doi.org/10.1016/j.ygeno.2011.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129413PMC
July 2011

SNP rs6457327 in the HLA region on chromosome 6p is predictive of the transformation of follicular lymphoma.

Blood 2011 Mar 13;117(11):3147-50. Epub 2011 Jan 13.

Centre for Haemato-Oncology, Barts Cancer Institute, Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK.

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http://dx.doi.org/10.1182/blood-2010-10-315382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3062316PMC
March 2011

Association of HLA-DQB1 alleles with risk of follicular lymphoma.

Leuk Lymphoma 2011 Jan 6;52(1):53-8. Epub 2010 Dec 6.

School of Public Health, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.3109/10428194.2010.532888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3331678PMC
January 2011

Chemokine polymorphisms and lymphoma: a pooled analysis.

Leuk Lymphoma 2010 Mar;51(3):497-506

Department of Epidemiology and Biostatistics, University of California, San Francisco, CA 94118-1944, USA.

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http://dx.doi.org/10.3109/10428190903518337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3443685PMC
March 2010

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D825-9. Epub 2007 Dec 17.

Switch Laboratory, Department of Applied Biological Sciences, Vrije Universiteit Brussel, Switch Laboratory, VIB, Pleinlaan 2, 1050 Brussel, Belgium.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkm979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238831PMC
January 2008

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Nucleic Acids Res 2007 Jul 27;35(Web Server issue):W81-5. Epub 2007 Apr 27.

Bioinformatics Department, Centro de Investigación Príncipe Felipe, INB, CIPF, Valencia 46013, Spain.

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http://dx.doi.org/10.1093/nar/gkm257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933149PMC
July 2007

Functional profiling and gene expression analysis of chromosomal copy number alterations.

Bioinformation 2007 Apr 10;1(10):432-5. Epub 2007 Apr 10.

Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Valencia, E-46013, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1896059PMC
http://dx.doi.org/10.6026/97320630001432DOI Listing
April 2007

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W472-6

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler 16, E-46013, Valencia, Spain.

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http://dx.doi.org/10.1093/nar/gkl172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538844PMC
July 2006

Next station in microarray data analysis: GEPAS.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W486-91

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler 16, E46013, Valencia, Spain.

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http://dx.doi.org/10.1093/nar/gkl197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538867PMC
July 2006

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W621-5

Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Valencia, 46013, Spain.

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http://dx.doi.org/10.1093/nar/gkl071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538854PMC
July 2006

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

Nucleic Acids Res 2005 Jul;33(Web Server issue):W460-4

Bioinformatics Unit, Centro Nacional de Investigaciones Oncológicas (CNIO) Melchor Fernández Almagro 3, 28029, Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gki456DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160217PMC
July 2005

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes.

Nucleic Acids Res 2005 Jul;33(Web Server issue):W501-5

Bioinformatics Unit, Centro Nacional de Investigaciones Oncológicas (CNIO), Madrid 28029, Spain.

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http://dx.doi.org/10.1093/nar/gki476DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1165690PMC
July 2005

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.

Nucleic Acids Res 2005 Jul;33(Web Server issue):W616-20

Bioinformatics Unit, Centro Nacional de Investigaciones Oncológicas (CNIO) Melchor Fernández Almagro 3, 28029 Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gki500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160260PMC
July 2005

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W242-8

Bioinformatics Unit, Centro Nacional de Investigaciones Oncológicas, Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gkh438DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441576PMC
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New challenges in gene expression data analysis and the extended GEPAS.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W485-91

Bioinformatics Unit, Biotechnology Programme, Centro Nacional de Investigaciones Oncológicas, Melchor Fernández Almagro, 3, E-28029 Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gkh421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441559PMC
July 2004