Luca Maragliano

Luca Maragliano

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Luca Maragliano

Luca Maragliano

Publications by authors named "Luca Maragliano"

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Synapsins are expressed at neuronal and non-neuronal locations in Octopus vulgaris.

Sci Rep 2019 Oct 28;9(1):15430. Epub 2019 Oct 28.

Center for Micro-BioRobotics & Center for Synaptic Neuroscience and Technology, Istituto Italiano di Tecnologia, Largo Rosanna Benzi 10, 16132, Genova, Italy.

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http://dx.doi.org/10.1038/s41598-019-51899-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6817820PMC
October 2019

Molecular Dynamics Simulations of Ion Selectivity in a Claudin-15 Paracellular Channel.

J Phys Chem B 2018 12 16;122(48):10783-10792. Epub 2018 Nov 16.

Center for Synaptic Neuroscience and Technology (NSYN@UniGe) , Istituto Italiano di Tecnologia , Largo Rosanna Benzi, 10 , 16132 Genova , Italy.

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http://dx.doi.org/10.1021/acs.jpcb.8b06484DOI Listing
December 2018

Closed-Locked and Apo-Resting State Structures of the Human α7 Nicotinic Receptor: A Computational Study.

J Chem Inf Model 2018 11 7;58(11):2278-2293. Epub 2018 Nov 7.

Department of Physics and Chemistry , University of Palermo , Viale delle Scienze Ed. 17 , 90128 Palermo , Italy.

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http://pubs.acs.org/doi/10.1021/acs.jcim.8b00412
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http://dx.doi.org/10.1021/acs.jcim.8b00412DOI Listing
November 2018

Effect of Intercalated Water on Potassium Ion Transport through Kv1.2 Channels Studied via On-the-Fly Free-Energy Parametrization.

J Chem Theory Comput 2018 May 3;14(5):2743-2750. Epub 2018 Apr 3.

Department of Chemical and Biological Engineering , Drexel University , Philadelphia , Pennsylvania 19104 , United States.

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http://dx.doi.org/10.1021/acs.jctc.8b00024DOI Listing
May 2018

Interfacing Graphene-Based Materials With Neural Cells.

Front Syst Neurosci 2018 11;12:12. Epub 2018 Apr 11.

Center for Synaptic Neuroscience and Technology, Istituto Italiano di Tecnologia, Genova, Italy.

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http://dx.doi.org/10.3389/fnsys.2018.00012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904258PMC
April 2018

A refined model of claudin-15 tight junction paracellular architecture by molecular dynamics simulations.

PLoS One 2017 1;12(9):e0184190. Epub 2017 Sep 1.

Center for Synaptic Neuroscience & Technology (NSYN@UniGe), Istituto Italiano di Tecnologia, Largo Rosanna Benzi, 10, 16132, Genova, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0184190PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5581167PMC
October 2017

Optogenetic Modulation of Intracellular Signalling and Transcription: Focus on Neuronal Plasticity.

J Exp Neurosci 2017 1;11:1179069517703354. Epub 2017 May 1.

Center for Synaptic Neuroscience and Technology, Istituto Italiano di Tecnologia, Genova, Italy.

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http://dx.doi.org/10.1177/1179069517703354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5415353PMC
May 2017

A Structural Model of the Human α7 Nicotinic Receptor in an Open Conformation.

PLoS One 2015 24;10(7):e0133011. Epub 2015 Jul 24.

Department of Physics, University of Roma "La Sapienza", Rome, Italy; School of Physics, University College Dublin, Dublin, Ireland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0133011PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514475PMC
May 2016

A Novel Topology of Proline-rich Transmembrane Protein 2 (PRRT2): HINTS FOR AN INTRACELLULAR FUNCTION AT THE SYNAPSE.

J Biol Chem 2016 Mar 21;291(12):6111-23. Epub 2016 Jan 21.

From the Department of Experimental Medicine, University of Genova, Viale Benedetto XV, 3, 16132 Genova, Italy, the Center for Synaptic Neuroscience and Technology, Fondazione Istituto Italiano di Tecnologia, Largo Rosanna Benzi 10, 16132 Genoa, Italy, and

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http://dx.doi.org/10.1074/jbc.M115.683888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4813553PMC
March 2016

Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor.

Proc Natl Acad Sci U S A 2016 Jan 23;113(1):E91-100. Epub 2015 Dec 23.

Center for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy; Department of Experimental Medicine, University of Genova, 16132 Genova, Italy

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http://dx.doi.org/10.1073/pnas.1507355112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711829PMC
January 2016

Extended Phase-Space Methods for Enhanced Sampling in Molecular Simulations: A Review.

Front Bioeng Biotechnol 2015 3;3:125. Epub 2015 Sep 3.

Center for Synaptic Neuroscience, Istituto Italiano di Tecnologia , Genova , Italy.

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http://dx.doi.org/10.3389/fbioe.2015.00125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4558547PMC
September 2015

Identification and Expression of Acetylcholinesterase in Octopus vulgaris Arm Development and Regeneration: a Conserved Role for ACHE?

Mol Neurobiol 2015 Aug 12;52(1):45-56. Epub 2014 Aug 12.

Department of Neuroscience and Brain Technologies, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genoa, Italy,

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http://dx.doi.org/10.1007/s12035-014-8842-2DOI Listing
August 2015

Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information.

J Chem Theory Comput 2015 Jul 3;11(7):3446-54. Epub 2015 Jun 3.

Unité de Bioinformatique Structurale, CNRS UMR 3528, Structural Biology and Chemistry Department, Institut Pasteur , 25-28, rue Dr. Roux, 75 724 Paris, France.

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http://dx.doi.org/10.1021/acs.jctc.5b00153DOI Listing
July 2015

Conformational changes in acetylcholine binding protein investigated by temperature accelerated molecular dynamics.

PLoS One 2014 13;9(2):e88555. Epub 2014 Feb 13.

School of Physics, University College Dublin, Dublin, Ireland ; Department of Physics, University of Roma "La Sapienza", Rome, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088555PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3923797PMC
October 2014

Temperature-accelerated molecular dynamics gives insights into globular conformations sampled in the free state of the AC catalytic domain.

Proteins 2014 Oct 9;82(10):2483-96. Epub 2014 Jun 9.

Institut Pasteur and CNRS UMR 3528, rue du Dr Roux, Unité de Bioinformatique Structurale, 75015, Paris, France; Université Pierre et Marie Curie, Cellule Pasteur UPMC, rue du Dr Roux, 75015, Paris, France.

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http://dx.doi.org/10.1002/prot.24612DOI Listing
October 2014

Functional role of ATP binding to synapsin I in synaptic vesicle trafficking and release dynamics.

J Neurosci 2014 Oct;34(44):14752-68

Department of Neuroscience and Brain Technologies, Istituto Italiano di Tecnologia, 16163 Genova, Italy, and Department of Experimental Medicine, University of Genova, 16132, Genova, Italy

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http://dx.doi.org/10.1523/JNEUROSCI.1093-14.2014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6608424PMC
October 2014

Comparison between Mean Forces and Swarms-of-Trajectories String Methods.

J Chem Theory Comput 2014 Feb;10(2):524-33

Courant Institute of Mathematical Sciences, New York University , New York, New York 10012, United States.

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http://dx.doi.org/10.1021/ct400606cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980172PMC
February 2014

Direct imaging of DNA fibers: the visage of double helix.

Nano Lett 2012 Dec 28;12(12):6453-8. Epub 2012 Nov 28.

Nanostructures, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy.

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http://dx.doi.org/10.1021/nl3039162DOI Listing
December 2012

Intermediate state trapping of a voltage sensor.

J Gen Physiol 2012 Dec;140(6):635-52

Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1085/jgp.201210827DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3514728PMC
December 2012

Calculation of Free Energy Landscape in Multi-Dimensions with Hamiltonian-Exchange Umbrella Sampling on Petascale Supercomputer.

J Chem Theory Comput 2012 Nov 17;8(11):4672-80. Epub 2012 Oct 17.

Argonne Leadership Computing Facility, Argonne National Laboratory , 9700 South Cass Avenue, Building 240, Argonne, Illinois 60439, United States.

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http://dx.doi.org/10.1021/ct300468gDOI Listing
November 2012

"DFG-flip" in the insulin receptor kinase is facilitated by a helical intermediate state of the activation loop.

Biophys J 2012 Apr;102(8):1979-87

Department of Chemistry and Biophysics, University of Michigan, Ann Arbor, Michigan, USA.

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http://dx.doi.org/10.1016/j.bpj.2012.03.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3328698PMC
April 2012

Mapping the network of pathways of CO diffusion in myoglobin.

J Am Chem Soc 2010 Jan;132(3):1010-7

Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1021/ja905671xDOI Listing
January 2010

Free energy and kinetics of conformational transitions from Voronoi tessellated milestoning with restraining potentials.

J Chem Theory Comput 2009 Aug;5(10):2589-2594

Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA, Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA, and Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA.

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http://dx.doi.org/10.1021/ct900279zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846710PMC
August 2009

Single-sweep methods for free energy calculations.

J Chem Phys 2008 May;128(18):184110

Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA.

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http://aip.scitation.org/doi/10.1063/1.2907241
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http://dx.doi.org/10.1063/1.2907241DOI Listing
May 2008

String method in collective variables: minimum free energy paths and isocommittor surfaces.

J Chem Phys 2006 Jul;125(2):24106

Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA.

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http://www.cims.nyu.edu/~eve2/string_coll_jcp.pdf
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http://scitation.aip.org/content/aip/journal/jcp/125/2/10.10
Publisher Site
http://dx.doi.org/10.1063/1.2212942DOI Listing
July 2006

Atomic mean-square displacements in proteins by molecular dynamics: a case for analysis of variance.

Biophys J 2004 May;86(5):2765-72

National Institute for the Physics of Matter and Physics Department, University of Rome, La Sapienza, 00185 Rome, Italy.

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http://linkinghub.elsevier.com/retrieve/pii/S000634950474330
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304147PMC
http://dx.doi.org/10.1016/S0006-3495(04)74330-1DOI Listing
May 2004