Lorena Pantano

Lorena Pantano

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Lorena Pantano

Lorena Pantano

Publications by authors named "Lorena Pantano"

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30Publications

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A High-Throughput Screening Identifies MicroRNA Inhibitors That Influence Neuronal Maintenance and/or Response to Oxidative Stress.

Mol Ther Nucleic Acids 2019 Sep 20;17:374-387. Epub 2019 Jun 20.

Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain; Departament de Biomedicina, Facultat de Medicina i Ciències de la Salut, Institut de Neurociències, Universitat de Barcelona, Barcelona 08036, Spain; Research Group on Statistics, Econometrics and Health, Universitat de Girona, 17003, Girona, Spain; Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública (CIBERESP), Ministerio de Ciencia Innovación y Universidades, Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.omtn.2019.06.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6626867PMC
September 2019

Single-cell cloning of human T-cell lines reveals clonal variation in cell death responses to chemotherapeutics.

Cancer Genet 2019 Sep 12;237:69-77. Epub 2019 Jun 12.

Division of Hematology/Oncology, Boston Children's Hospital, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02115, United States; Department of Pediatrics, Harvard Medical School, Boston, MA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.cancergen.2019.06.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711394PMC
September 2019

Multi omics analysis of fibrotic kidneys in two mouse models.

Sci Data 2019 06 14;6(1):92. Epub 2019 Jun 14.

Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1038/s41597-019-0095-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6570759PMC
June 2019

Visualization of the small RNA transcriptome using seqclusterViz.

F1000Res 2019 28;8. Epub 2019 Feb 28.

Biostatistics, Harvard T.H. Chan school of Public Health, Boston, MA, 02115, USA.

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https://f1000research.com/articles/8-232/v1
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http://dx.doi.org/10.12688/f1000research.18142.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6446497.2PMC
February 2019

Comparative analysis of LIN28-RNA binding sites identified at single nucleotide resolution.

RNA Biol 2017 12 9;14(12):1756-1765. Epub 2017 Oct 9.

a Department of Biological Chemistry and Molecular Pharmacology , Harvard Medical School , Boston , MA.

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http://dx.doi.org/10.1080/15476286.2017.1356566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731800PMC
December 2017

Viewing RNA-seq data on the entire human genome.

F1000Res 2017 28;6:596. Epub 2017 Apr 28.

National Center for Biotechnology Information, U.S. National Library of Medicine, Bethesda, MD, 20894, USA.

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http://dx.doi.org/10.12688/f1000research.9762.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605993PMC
April 2017

Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson's disease revealed by deep sequencing analysis.

Bioinformatics 2016 03 2;32(5):673-81. Epub 2015 Nov 2.

Genomics and Disease Group, Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona 08003, Spain, Universitat Pompeu Fabra (UPF), Barcelona 08003, Spain, IMIM, Hospital del Mar Medical Research Institute, Barcelona 08003, Spain, CIBER de Epidemiología y Salud Pública (CIBERESP), CRG, Instituto Carlos III Barcelona 08003, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btv632DOI Listing
March 2016

Genomic analyses identify molecular subtypes of pancreatic cancer.

Authors:
Peter Bailey David K Chang Katia Nones Amber L Johns Ann-Marie Patch Marie-Claude Gingras David K Miller Angelika N Christ Tim J C Bruxner Michael C Quinn Craig Nourse L Charles Murtaugh Ivon Harliwong Senel Idrisoglu Suzanne Manning Ehsan Nourbakhsh Shivangi Wani Lynn Fink Oliver Holmes Venessa Chin Matthew J Anderson Stephen Kazakoff Conrad Leonard Felicity Newell Nick Waddell Scott Wood Qinying Xu Peter J Wilson Nicole Cloonan Karin S Kassahn Darrin Taylor Kelly Quek Alan Robertson Lorena Pantano Laura Mincarelli Luis N Sanchez Lisa Evers Jianmin Wu Mark Pinese Mark J Cowley Marc D Jones Emily K Colvin Adnan M Nagrial Emily S Humphrey Lorraine A Chantrill Amanda Mawson Jeremy Humphris Angela Chou Marina Pajic Christopher J Scarlett Andreia V Pinho Marc Giry-Laterriere Ilse Rooman Jaswinder S Samra James G Kench Jessica A Lovell Neil D Merrett Christopher W Toon Krishna Epari Nam Q Nguyen Andrew Barbour Nikolajs Zeps Kim Moran-Jones Nigel B Jamieson Janet S Graham Fraser Duthie Karin Oien Jane Hair Robert Grützmann Anirban Maitra Christine A Iacobuzio-Donahue Christopher L Wolfgang Richard A Morgan Rita T Lawlor Vincenzo Corbo Claudio Bassi Borislav Rusev Paola Capelli Roberto Salvia Giampaolo Tortora Debabrata Mukhopadhyay Gloria M Petersen Donna M Munzy William E Fisher Saadia A Karim James R Eshleman Ralph H Hruban Christian Pilarsky Jennifer P Morton Owen J Sansom Aldo Scarpa Elizabeth A Musgrove Ulla-Maja Hagbo Bailey Oliver Hofmann Robert L Sutherland David A Wheeler Anthony J Gill Richard A Gibbs John V Pearson Nicola Waddell Andrew V Biankin Sean M Grimmond

Nature 2016 Mar 24;531(7592):47-52. Epub 2016 Feb 24.

Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1038/nature16965DOI Listing
March 2016

Functional Impact and Evolution of a Novel Human Polymorphic Inversion That Disrupts a Gene and Creates a Fusion Transcript.

PLoS Genet 2015 Oct 1;11(10):e1005495. Epub 2015 Oct 1.

Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.

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http://dx.doi.org/10.1371/journal.pgen.1005495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4591017PMC
October 2015

The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes.

RNA 2015 Jun 22;21(6):1085-95. Epub 2015 Apr 22.

Institute of Predictive and Personalized Medicine of Cancer (IMPPC), Can Ruti Campus, Badalona, Barcelona 08916, Spain Josep Carreras Leukaemia Research Institute (IJC), ICO-Hospital GermansTrias i Pujol, Badalona, Barcelona 08916, Spain.

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http://dx.doi.org/10.1261/rna.046482.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436662PMC
June 2015

InvFEST, a database integrating information of polymorphic inversions in the human genome.

Nucleic Acids Res 2014 Jan 18;42(Database issue):D1027-32. Epub 2013 Nov 18.

Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain, Departament de Genètica i de Microbiologia, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain and Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.

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http://dx.doi.org/10.1093/nar/gkt1122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965118PMC
January 2014

A pathogenic mechanism in Huntington's disease involves small CAG-repeated RNAs with neurotoxic activity.

PLoS Genet 2012 23;8(2):e1002481. Epub 2012 Feb 23.

Genes and Disease Programme, Centre for Genomic Regulation and Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1371/journal.pgen.1002481DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3285580PMC
February 2013

A highly expressed miR-101 isomiR is a functional silencing small RNA.

BMC Genomics 2013 Feb 15;14:104. Epub 2013 Feb 15.

Molecular and Cellular Neurobiotechnology Group, Institut de Bioenginyeria de Catalunya, Parc Científic de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1186/1471-2164-14-104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751341PMC
February 2013

A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.

Bioinformatics 2011 Nov 5;27(22):3202-3. Epub 2011 Oct 5.

Genetic Causes of Disease, Genes and Disease Programme, Centre for Genomic Regulation (CRG) and UPF, Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btr527DOI Listing
November 2011

A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing.

Nucleic Acids Res 2010 Nov 30;38(20):7219-35. Epub 2010 Jun 30.

Genetic Causes of Disease Group, Genes and Disease Program, Centre for Genomic Regulation (CRG), Catalonia, Spain.

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http://dx.doi.org/10.1093/nar/gkq575DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978354PMC
November 2010

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells.

Nucleic Acids Res 2010 Mar 11;38(5):e34. Epub 2009 Dec 11.

Genetic Causes of Disease Group, Genes and Disease Program, Centre for Genomic Regulation, Pompeu Fabra University, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1093/nar/gkp1127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836562PMC
March 2010

Identification of copy number variants defining genomic differences among major human groups.

PLoS One 2009 Sep 30;4(9):e7230. Epub 2009 Sep 30.

Genetic Causes of Disease Group, Genes and Disease Program, Center for Genomic Regulation (CRG-UPF) and CIBERESP, Barcelona, Catalonia, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007230PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747275PMC
September 2009

ProSeeK: a web server for MLPA probe design.

BMC Genomics 2008 Nov 28;9:573. Epub 2008 Nov 28.

Genes and Disease Program, Center for Genomic Regulation (CRG), Doctor Aiguader, Catalonia, Spain.

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http://dx.doi.org/10.1186/1471-2164-9-573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2625369PMC
November 2008

Genome assembly comparison identifies structural variants in the human genome.

Nat Genet 2006 Dec 22;38(12):1413-8. Epub 2006 Nov 22.

Program in Genetics and Genomic Biology, The Hospital for Sick Children and Department of Molecular and Medical Genetics, University of Toronto and The Centre for Applied Genomics, MaRS Centre, Toronto, Ontario, M5G 1L7, Canada.

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http://www.nature.com/articles/ng1921
Publisher Site
http://dx.doi.org/10.1038/ng1921DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2674632PMC
December 2006