Logan Everett

Logan Everett

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Logan Everett

Logan Everett

Publications by authors named "Logan Everett"

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29Publications

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Gene expression networks in the Genetic Reference Panel.

Genome Res 2020 Mar 6;30(3):485-496. Epub 2020 Mar 6.

Program in Genetics, W.M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695-7614, USA.

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http://dx.doi.org/10.1101/gr.257592.119DOI Listing
March 2020

Lisinopril Preserves Physical Resilience and Extends Life Span in a Genotype-Specific Manner in Drosophila melanogaster.

J Gerontol A Biol Sci Med Sci 2019 Nov;74(12):1844-1852

Biology of Healthy Aging Program, Division of Geriatric Medicine and Gerontology, School of Medicine, Johns Hopkins University, Baltimore.

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http://dx.doi.org/10.1093/gerona/glz152DOI Listing
November 2019

Development of a Zebrafish S1500+ Sentinel Gene Set for High-Throughput Transcriptomics.

Zebrafish 2019 08 12;16(4):331-347. Epub 2019 Jun 12.

4Division of the National Toxicology Program, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina.

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http://dx.doi.org/10.1089/zeb.2018.1720DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685209PMC
August 2019

Obp56h Modulates Mating Behavior in Drosophila melanogaster.

G3 (Bethesda) 2016 10 13;6(10):3335-3342. Epub 2016 Oct 13.

Department of Biological Sciences, Program in Genetics and W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, North Carolina 27695

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http://dx.doi.org/10.1534/g3.116.034595DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5068952PMC
October 2016

Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo.

Cell 2015 Jul;162(1):33-44

Department of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA; Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://www.cell.com/cms/attachment/2035445924/2050997248/mmc
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http://linkinghub.elsevier.com/retrieve/pii/S009286741500709
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http://dx.doi.org/10.1016/j.cell.2015.06.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4493773PMC
July 2015

Nuclear receptor Rev-erbα: up, down, and all around.

Trends Endocrinol Metab 2014 Nov 22;25(11):586-92. Epub 2014 Jul 22.

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Department of Genetics, and The Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tem.2014.06.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252361PMC
November 2014

CREB mediates the insulinotropic and anti-apoptotic effects of GLP-1 signaling in adult mouse β-cells.

Mol Metab 2014 Nov 23;3(8):803-12. Epub 2014 Aug 23.

Department of Genetics and Institute for Diabetes, Obesity, and Metabolism, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.molmet.2014.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4216406PMC
November 2014

Circadian enhancers coordinate multiple phases of rhythmic gene transcription in vivo.

Cell 2014 Nov;159(5):1140-1152

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Department of Genetics, and The Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674140131
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http://dx.doi.org/10.1016/j.cell.2014.10.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243056PMC
November 2014

Cell-specific integration of nuclear receptor function at the genome.

Wiley Interdiscip Rev Syst Biol Med 2013 Sep-Oct;5(5):615-29. Epub 2013 Jun 11.

Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Institute of Diabetes, Obesity, and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1002/wsbm.1231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3745817PMC
March 2014

CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation.

Nucleic Acids Res 2014 Jan 10;42(2):774-89. Epub 2013 Oct 10.

Department of Cell & Developmental Biology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA, Program of Gene Expression and Regulation, The Wistar Institute, Philadelphia, PA 19104, USA, Department of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA and Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1093/nar/gkt910DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3902912PMC
January 2014

Deacetylase-independent function of HDAC3 in transcription and metabolism requires nuclear receptor corepressor.

Mol Cell 2013 Dec 21;52(6):769-82. Epub 2013 Nov 21.

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, and The Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2013.10.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877208PMC
December 2013

The nuclear receptor Rev-erbα controls circadian thermogenic plasticity.

Nature 2013 Nov 27;503(7476):410-413. Epub 2013 Oct 27.

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Department of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://www.nature.com/articles/nature12642
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http://dx.doi.org/10.1038/nature12642DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839416PMC
November 2013

Integrative genomic analysis of CREB defines a critical role for transcription factor networks in mediating the fed/fasted switch in liver.

BMC Genomics 2013 May 17;14:337. Epub 2013 May 17.

Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1186/1471-2164-14-337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3671974PMC
May 2013

Epigenomic plasticity enables human pancreatic α to β cell reprogramming.

J Clin Invest 2013 Mar 22;123(3):1275-84. Epub 2013 Feb 22.

Department of Genetics and Institute for Diabetes, Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1172/JCI66514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3582140PMC
March 2013

Rev-erbα and Rev-erbβ coordinately protect the circadian clock and normal metabolic function.

Genes Dev 2012 Apr;26(7):657-67

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Department of Genetics, The Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1101/gad.186858.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323877PMC
April 2012

Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation.

Genes Dev 2011 Dec;25(23):2480-8

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://genesdev.cshlp.org/cgi/doi/10.1101/gad.175950.111
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http://dx.doi.org/10.1101/gad.175950.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3243058PMC
December 2011

Diet-induced lethality due to deletion of the Hdac3 gene in heart and skeletal muscle.

J Biol Chem 2011 Sep 1;286(38):33301-9. Epub 2011 Aug 1.

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine and Department of Genetics, and Institute for Diabetes, Obesity, and Metabolism, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1074/jbc.M111.277707DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3190900PMC
September 2011

Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis.

Nucleic Acids Res 2011 Jul 5;39(12):e78. Epub 2011 Apr 5.

Genomics and Computational Biology Program, 700 Clinical Research Building, 415 Curie Boulevard, Philadelphia, PA 19104, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkr172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130287PMC
July 2011

Species-specific strategies underlying conserved functions of metabolic transcription factors.

Mol Endocrinol 2011 Apr 3;25(4):694-706. Epub 2011 Feb 3.

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104-6149, USA.

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http://dx.doi.org/10.1210/me.2010-0454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3386547PMC
April 2011

Regulating the regulators: modulators of transcription factor activity.

Methods Mol Biol 2010 ;674:297-312

Department of Genetics, Penn Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1007/978-1-60761-854-6_19DOI Listing
December 2010

Unbiased statistical analysis for multi-stage proteomic search strategies.

J Proteome Res 2010 Feb;9(2):700-7

University of Pennsylvania, Department of Pathology and Laboratory Medicine, 613A Stellar-Chance Laboratories, 422 Curie Boulevard, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1021/pr900256vDOI Listing
February 2010

Mimosa: mixture model of co-expression to detect modulators of regulatory interaction.

Algorithms Mol Biol 2010 Jan 4;5. Epub 2010 Jan 4.

Department of Genetics, Penn Center for Bioinformatics, University of Pennsylvania, Pennsylvania, USA.

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http://almob.biomedcentral.com/articles/10.1186/1748-7188-5-
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http://dx.doi.org/10.1186/1748-7188-5-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2826332PMC
January 2010

PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes.

Nucleic Acids Res 2009 Jan 15;37(Database issue):D66-71. Epub 2008 Oct 15.

Penn Center for Bioinformatics, Department of Genetics and Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1093/nar/gkn731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686453PMC
January 2009

Paired-end genomic signature tags: a method for the functional analysis of genomes and epigenomes.

Genet Eng (N Y) 2007 ;28:159-73

Biology Department, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.

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http://dx.doi.org/10.1007/978-0-387-34504-8_9DOI Listing
January 2007

Dense subgraph computation via stochastic search: application to detect transcriptional modules.

Bioinformatics 2006 Jul;22(14):e117-23

Penn Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1093/bioinformatics/btl260DOI Listing
July 2006