Publications by authors named "Liza Konnikova"

26Publications

An RTEL1 Mutation Links to Infantile-Onset Ulcerative Colitis and Severe Immunodeficiency.

J Clin Immunol 2020 Oct 24;40(7):1010-1019. Epub 2020 Jul 24.

Pediatric Gastroenterology Unit, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Ramat Gan, Israel.

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http://dx.doi.org/10.1007/s10875-020-00829-zDOI Listing
October 2020

Artificial-cell-type aware cell-type classification in CITE-seq.

Bioinformatics 2020 Jul;36(Supplement_1):i542-i550

Department of Medicine, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1093/bioinformatics/btaa467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7355304PMC
July 2020

The Protective Effects of Calcineurin on Pancreatitis in Mice Depend on the Cellular Source.

Gastroenterology 2020 Sep 20;159(3):1036-1050.e8. Epub 2020 May 20.

Division of Pediatric Gastroenterology, Department of Pediatrics, Stanford University, Palo Alto, California. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2020.05.051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7502475PMC
September 2020

Single-Cell Analyses of Colon and Blood Reveal Distinct Immune Cell Signatures of Ulcerative Colitis and Crohn's Disease.

Gastroenterology 2020 Aug 16;159(2):591-608.e10. Epub 2020 May 16.

Division of Newborn Medicine, Boston Children's Hospital, Boston, Massachusetts; Department of Pediatrics, University of Pittsburgh Medical Center Children's Hospital, Pittsburgh, Pennsylvania; Department of Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania; Department of Developmental Biology University of Pittsburgh, Pittsburgh, Pennsylvania; Department of Pediatrics, Yale University School of Medicine, New Haven, Connecticut. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2020.04.074DOI Listing
August 2020

Recent Advances in Computer-Assisted Algorithms for Cell Subtype Identification of Cytometry Data.

Front Cell Dev Biol 2020 28;8:234. Epub 2020 Apr 28.

Department of Pediatrics, University of Pittsburgh, Pittsburgh, PA, United States.

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http://dx.doi.org/10.3389/fcell.2020.00234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7198724PMC
April 2020

Role of Nutrition in Prevention of Neonatal Spontaneous Intestinal Perforation and Its Complications: A Systematic Review.

Nutrients 2020 May 8;12(5). Epub 2020 May 8.

Division of Newborn Medicine, University of Pittsburgh Medical Center Children's Hospital of Pittsburgh, Pittsburgh, PA 15224, USA.

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http://dx.doi.org/10.3390/nu12051347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7284579PMC
May 2020

Maturation of the Human Intestinal Immune System Occurs Early in Fetal Development.

Dev Cell 2019 11 10;51(3):357-373.e5. Epub 2019 Oct 10.

Division of Newborn Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, PA 15224, USA; Department of Immunology, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Developmental Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2019.09.008DOI Listing
November 2019

Low-Dose Interleukin-2 Ameliorates Colitis in a Preclinical Humanized Mouse Model.

Cell Mol Gastroenterol Hepatol 2019 9;8(2):193-195. Epub 2019 May 9.

Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston, Massachusetts; Department of Pediatrics, Harvard Medical School, Boston, Massachusetts; Division of Gastroenterology, Brigham and Women's Hospital, Boston, Massachusetts. Electronic address:

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http://dx.doi.org/10.1016/j.jcmgh.2019.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6661391PMC
July 2020

An algorithm for the classification of mRNA patterns in eosinophilic esophagitis: Integration of machine learning.

J Allergy Clin Immunol 2018 04 19;141(4):1354-1364.e9. Epub 2017 Dec 19.

Department of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston, Mass; Department of Medicine, Harvard Medical School, Boston, Mass. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2017.11.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6425755PMC
April 2018

Enhanced TH17 Responses in Patients with IL10 Receptor Deficiency and Infantile-onset IBD.

Inflamm Bowel Dis 2017 11;23(11):1950-1961

1Division of Pediatric Gastroenterology and Nutrition, Edmond and Lily Safra Children's Hospital, Sheba Medical Center, Tel Hashomer, Ramat-Gan, Israel; 2Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; 3Department of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston, Massachusetts; 4VEO-IBD Consortium; 5Department of Pediatrics and Newborn Medicine, Brigham and Women's Hospital, Boston, Massachusetts; 6Harvard Medical School, Boston, Massachusetts; 7Great Ormond Street Hospital London, London, England; 8Translational Gastroenterology Unit, University of Oxford, Oxford, England; 9Division of Gastroenterology, Hepatology and Nutrition, Department of Medicine, University of Florida, Gainesville, Florida; 10Division of Gastroenterology and Nutrition, The Children's Hospital at Montefiore, Bronx, New York; 11Pediatric Gastroenterology Unit, Soroka University Medical Center and Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel; 12Department of Pediatrics, Kurume University School of Medicine, Kurume, Japan; 13Department of Pediatric Hematology and Oncology, Hannover Medical School, Hannover, Germany; 14Department of Gastroenterology, Children's National Medical Center, Washington, DC; 15Division of Pediatric Hematology and Oncology, University of Michigan, Ann Arbor, Michigan; 16Hospital das Clınicas, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil; 17Division of Gastroenterology, McMaster Children's Hospital, West Hamilton, Ontario, Canada; 18Dr von Hauner Children's Hospital, Ludwig-Maximilians-University, Munich, Germany; 19Division of Pathology, Boston Children's Hospital, Boston, Massachusetts; 20Department of Pediatrics, University of Oxford, Oxford, England; 21Inflammatory Bowel Disease Center and Cell Biology Program, Research Institute, Hospital for Sick Children, Toronto, Ontario, Canada; 22Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of Toronto, Hospital for Sick Children, Toronto, Ontario, Canada; 23Department of Biochemistry, Institute of Medical Science, University of Toronto, Toronto, Ontario, Canada; and 24Division of Gastroenterology, Hepatology and Endoscopy, Brigham and Women's Hospital, Boston, Massachusetts.

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http://dx.doi.org/10.1097/MIB.0000000000001270DOI Listing
November 2017

Impact of Antibiotics on Necrotizing Enterocolitis and Antibiotic-Associated Diarrhea.

Gastroenterol Clin North Am 2017 03;46(1):61-76

Division of Infectious Diseases, Department of Pediatrics, The Children's Hospital of Philadelphia, University of Pennsylvania School of Medicine, 3535 Market Street, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.gtc.2016.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5314436PMC
March 2017

MUCOSAL IMMUNOLOGY. Individual intestinal symbionts induce a distinct population of RORγ⁺ regulatory T cells.

Science 2015 Aug 13;349(6251):993-7. Epub 2015 Aug 13.

Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston 02115, MA, USA. Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.aaa9420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4700932PMC
August 2015

The zebrafish down syndrome cell adhesion molecule is involved in cell movement during embryogenesis.

Dev Biol 2005 Mar;279(1):44-57

Cellular and Molecular Physiology, Tufts University School of Medicine, 136 Harrison Avenue, M and V 709, Boston, MA 02111, USA.

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http://dx.doi.org/10.1016/j.ydbio.2004.12.001DOI Listing
March 2005

Knockdown of STAT3 expression by RNAi induces apoptosis in astrocytoma cells.

BMC Cancer 2003 Sep 17;3:23. Epub 2003 Sep 17.

Department of Physiology, Tufts University School of Medicine, 136 Harrison Ave, Boston, Massachusetts 02111, USA.

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http://dx.doi.org/10.1186/1471-2407-3-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC212316PMC
September 2003

Clinical dilemma in triplet pregnancy: when is it appropriate to intervene for a jeopardized fetus?

J Perinatol 2003 Apr-May;23(3):229-34

Department of Pediatrics, Floating Hospital for Children, New England Medical Center, Boston, MA 02111, USA.

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http://dx.doi.org/10.1038/sj.jp.7210888DOI Listing
October 2003