Liudmilla Rubbi

Liudmilla Rubbi

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Liudmilla Rubbi

Liudmilla Rubbi

Publications by authors named "Liudmilla Rubbi"

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32Publications

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DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS).

PLoS One 2019 4;14(4):e0214368. Epub 2019 Apr 4.

Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214368PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6448829PMC
April 2019

Transposon-associated epigenetic silencing during Pleurotus ostreatus life cycle.

DNA Res 2018 Oct;25(5):451-464

Genetics and Microbiology Research Group, Department of Agrarian Production, Public University of Navarre, Pamplona, Navarre, Spain.

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http://dx.doi.org/10.1093/dnares/dsy016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191308PMC
October 2018

A multi-tissue full lifespan epigenetic clock for mice.

Aging (Albany NY) 2018 10;10(10):2832-2854

Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.18632/aging.101590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224226PMC
October 2018

Prenatal Growth Patterns and Birthweight Are Associated With Differential DNA Methylation and Gene Expression of Cardiometabolic Risk Genes in Human Placentas: A Discovery-Based Approach.

Reprod Sci 2018 04 11;25(4):523-539. Epub 2017 Jul 11.

2 Division of Neonatology and Developmental Biology, Department of Pediatrics, Neonatal Research Center of the UCLA Children's Discovery and Innovation Institute, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.

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http://journals.sagepub.com/doi/10.1177/1933719117716779
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http://dx.doi.org/10.1177/1933719117716779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348426PMC
April 2018

Omega-3 fatty acids increase the unfolded protein response and improve amyloid-β phagocytosis by macrophages of patients with mild cognitive impairment.

FASEB J 2017 10 20;31(10):4359-4369. Epub 2017 Jun 20.

Department of Cell, Molecular, and Developmental Biology, UCLA Life Sciences, University of California, Los Angeles, Los Angeles, California, USA;

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http://dx.doi.org/10.1096/fj.201700290RDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5602894PMC
October 2017

Transcriptomic Modification in the Cerebral Cortex following Noninvasive Brain Stimulation: RNA-Sequencing Approach.

Neural Plast 2016 29;2016:5942980. Epub 2016 Dec 29.

Applied Neuroscience, Warfighter Interface Division, 711th Human Performance Wing, Air Force Research Laboratory, Wright-Patterson AFB, Dayton, OH 45433, USA.

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http://dx.doi.org/10.1155/2016/5942980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5227175PMC
August 2017

Cardiac Fibroblasts Adopt Osteogenic Fates and Can Be Targeted to Attenuate Pathological Heart Calcification.

Cell Stem Cell 2017 02 17;20(2):218-232.e5. Epub 2016 Nov 17.

Division of Cardiology, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles (UCLA), CA 90095, USA; Cardiovascular Research Laboratory, David Geffen School of Medicine, UCLA, CA 90095, USA; Department of Molecular, Cell and Developmental Biology, School of Letters and Sciences, UCLA, CA 90095, USA; Eli & Edythe Broad Center of Regenerative Medicine and Stem Cell Research, UCLA, CA 90095, USA; Molecular Biology Institute, UCLA, CA 90095, USA; Jonsson Comprehensive Cancer Center, UCLA, CA 90095, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2016.10.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291784PMC
February 2017

Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation.

Cell Rep 2017 01 16;18(1):54-67. Epub 2016 Dec 16.

Department of Biological Chemistry, Molecular Biology Institute, Jonsson Comprehensive Cancer Center, Bioinformatics Program, Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.11.054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5214931PMC
January 2017

Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients.

FASEB J 2016 10 1;30(10):3461-3473. Epub 2016 Jul 1.

Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, Los Angeles, California, USA; Department of Surgery, UCLA School of Medicine, University of California, Los Angeles, Los Angeles, California, USA; and

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http://dx.doi.org/10.1096/fj.201600259RRDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024692PMC
October 2016

Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells.

Cell Rep 2016 09;17(1):289-302

Department of Human Genetics and Broad Stem Cell Research Center, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247163117
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http://dx.doi.org/10.1016/j.celrep.2016.08.083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507178PMC
September 2016

Novel features of telomere biology revealed by the absence of telomeric DNA methylation.

Genome Res 2016 08 12;26(8):1047-56. Epub 2016 Jul 12.

Institute of Vegetal Biochemistry and Photosynthesis, CSIC-University of Seville, IBVF (CSIC-US), 41092 Seville, Spain.

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http://dx.doi.org/10.1101/gr.202465.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971770PMC
August 2016

Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes.

PLoS One 2015 3;10(6):e0128814. Epub 2015 Jun 3.

Department of Molecular, Cell, and Developmental Biology, University of California Los Angeles, Los Angeles, California, 90095, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128814PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4454596PMC
April 2016

DNA Methylation Indicates Susceptibility to Isoproterenol-Induced Cardiac Pathology and Is Associated With Chromatin States.

Circ Res 2016 Mar 11;118(5):786-97. Epub 2016 Jan 11.

From the Departments of Anesthesiology and Perioperative Medicine (H.C., C.D.R., S.R., Y.W., T.M.V.), Human Genetics (A.J.L.), Microbiology, Immunology and Molecular Genetics (A.J.L.), Molecular, Cellular and Development Biology (L.D.O., L.R., M.P.), Medicine/Cardiology (J.W., Y.W., A.J.L., T.M.V.), and Physiology, David Geffen School of Medicine, University of California, Los Angeles (Y.W., T.M.V.).

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http://dx.doi.org/10.1161/CIRCRESAHA.115.305298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779427PMC
March 2016

Anti-inflammatory therapies of amyotrophic lateral sclerosis guided by immune pathways.

Am J Neurodegener Dis 2015 28;4(2):28-39. Epub 2015 Dec 28.

Department of Surgery, UCLA School of Medicine Los Angeles, CA 90095-7022.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4700124PMC
January 2016

Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle.

Plant Physiol 2015 Dec 8;169(4):2730-43. Epub 2015 Oct 8.

Molecular Biology Institute (D.L.), Department of Molecular, Cell, and Developmental Biology (D.L., M.M., L.R., S.F.-G., M.P.), Department of Chemistry and Biochemistry (J.K., S.F.-G., S.D.G., S.S.M.), and Institute for Genomics and Proteomics (S.S.M., M.P.), University of California, Los Angeles, California 90095;Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (T.H., J.U.); andSalk Institute for Biological Studies, La Jolla, California 92037 (P.D.H.)

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http://dx.doi.org/10.1104/pp.15.00861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4677889PMC
December 2015

A high-throughput screen of inactive X chromosome reactivation identifies the enhancement of DNA demethylation by 5-aza-2'-dC upon inhibition of ribonucleotide reductase.

Epigenetics Chromatin 2015 13;8:42. Epub 2015 Oct 13.

Department of Biological Chemistry, David Geffen School of Medicine, Eli and Edythe Broad Center for Regenerative Medicine, Jonsson Comprehensive Cancer Center, Molecular Biology Institute, University of California, 615 Charles E. Young Drive South, BSRB 390D, Los Angeles, 90095 USA.

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http://dx.doi.org/10.1186/s13072-015-0034-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604769PMC
October 2015

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse.

Elife 2015 Apr 7;4:e06205. Epub 2015 Apr 7.

Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, United States.

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http://dx.doi.org/10.7554/eLife.06205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412109PMC
April 2015

Scl binds to primed enhancers in mesoderm to regulate hematopoietic and cardiac fate divergence.

EMBO J 2015 Mar 6;34(6):759-77. Epub 2015 Jan 6.

Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA Eli and Edythe Broad Stem Cell Research Center, University of California, Los Angeles, CA, USA

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http://dx.doi.org/10.15252/embj.201490542DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4369313PMC
March 2015

The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging.

Biol Sex Differ 2014 13;5. Epub 2014 Jun 13.

Department of Human Genetics, David Geffen School of Medicine at University of California Los Angeles (UCLA), Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1186/2042-6410-5-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4074311PMC
June 2014

Determining DNA methylation profiles using sequencing.

Methods Mol Biol 2011 ;733:223-38

Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA.

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http://dx.doi.org/10.1007/978-1-61779-089-8_16DOI Listing
July 2011

Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling.

Sci Signal 2011 Mar 29;4(166):ra18. Epub 2011 Mar 29.

Crump Institute for Molecular Imaging; Institute for Molecular Medicine; Jonsson Comprehensive Cancer Center, California NanoSystems Institute, David Geffen School of Medicine, Department of Molecular & Medical Pharmacology, University of California, Los Angeles CA 90095, USA.

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http://dx.doi.org/10.1126/scisignal.2001314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4057100PMC
March 2011

Integrated microfluidic and imaging platform for a kinase activity radioassay to analyze minute patient cancer samples.

Cancer Res 2010 Nov 13;70(21):8299-308. Epub 2010 Sep 13.

Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, University of California, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-0851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989903PMC
November 2010

A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster.

Mol Cell 2008 Dec;32(5):685-95

Wellcome Trust Centre for Cell Biology, Institute for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK.

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http://dx.doi.org/10.1016/j.molcel.2008.09.027DOI Listing
December 2008

Histone acetylation regulates the time of replication origin firing.

Mol Cell 2002 Nov;10(5):1223-33

Department of Biological Chemistry, UCLA School of Medicine, Boyer Hall, University of California-Los Angeles, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1016/s1097-2765(02)00702-5DOI Listing
November 2002