Publications by authors named "Liqing Zhang"

99Publications

Person Re-Identification With Reinforced Attribute Attention Selection.

IEEE Trans Image Process 2021 25;30:603-616. Epub 2020 Nov 25.

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http://dx.doi.org/10.1109/TIP.2020.3036762DOI Listing
November 2020

Delinquent Events Prediction in Temporal Networked-Guarantee Loans.

IEEE Trans Neural Netw Learn Syst 2020 Oct 13;PP. Epub 2020 Oct 13.

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http://dx.doi.org/10.1109/TNNLS.2020.3027346DOI Listing
October 2020

Cadmium accumulation in oilseed rape is promoted by intercropping with faba bean and ryegrass.

Ecotoxicol Environ Saf 2020 Dec 21;205:111162. Epub 2020 Aug 21.

College of Resources and Environment, Hunan Agricultural University, Changsha, Hunan, 410128, PR China; Key Laboratory for Rural Ecosystem Health in the Dongting Lake Area of Hunan Province, Changsha, 410128, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ecoenv.2020.111162DOI Listing
December 2020

Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro.

PLoS One 2020 25;15(6):e0234046. Epub 2020 Jun 25.

United States Department of Agriculture, Dairy and Functional Foods Research Unit, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0234046PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7316517PMC
August 2020

The Anxiety Status of Chinese Medical Workers During the Epidemic of COVID-19: A Meta-Analysis.

Psychiatry Investig 2020 May 15;17(5):475-480. Epub 2020 May 15.

Department of Psychiatry, The First Affiliated Hospital of Jinan University, Guangzhou, China.

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http://dx.doi.org/10.30773/pi.2020.0127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7265026PMC
May 2020

Characterization and Fungicide Sensitivity of Species Causing Strawberry Anthracnose in Eastern China.

Plant Dis 2020 Jul 13;104(7):1960-1968. Epub 2020 May 13.

Shanghai Key Laboratory of Protected Horticultural Technology, Forestry and Fruit Tree Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China.

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http://dx.doi.org/10.1094/PDIS-10-19-2241-REDOI Listing
July 2020

Identification of Potential Biomarkers for Thyroid Cancer Using Bioinformatics Strategy: A Study Based on GEO Datasets.

Biomed Res Int 2020 1;2020:9710421. Epub 2020 Apr 1.

Department of Otorhinolaryngology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029 Jiangsu, China.

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http://dx.doi.org/10.1155/2020/9710421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7152968PMC
April 2020

DeepMicro: deep representation learning for disease prediction based on microbiome data.

Authors:
Min Oh Liqing Zhang

Sci Rep 2020 04 7;10(1):6026. Epub 2020 Apr 7.

Department of Computer Science, Virginia Tech, Blacksburg, VA, USA.

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http://dx.doi.org/10.1038/s41598-020-63159-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7138789PMC
April 2020

Draft Genome Sequence of the Strawberry Anthracnose Pathogen .

Microbiol Resour Announc 2020 Mar 19;9(12). Epub 2020 Mar 19.

Department of Genetics, Genomics and Breeding, NIAB EMR, Kent, United Kingdom.

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http://dx.doi.org/10.1128/MRA.01598-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082466PMC
March 2020

Preoperative platelet-lymphocyte ratio predicts recurrence of laryngeal squamous cell carcinoma.

Future Oncol 2020 Feb 27;16(6):209-217. Epub 2020 Jan 27.

Department of Otorhinolaryngology, The First Affiliated Hospital, Nanjing Medical University, Nanjing, Jiangsu, 210029, PR China.

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http://dx.doi.org/10.2217/fon-2019-0527DOI Listing
February 2020

Correction to: Functional analysis of GhCHS, GhANR and GhLAR in colored fiber formation of Gossypium hirsutum L.

BMC Plant Biol 2020 01 19;20(1):28. Epub 2020 Jan 19.

Plant Genomics & Molecular Improvement of Colored Fiber Lab, Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, 310016, Zhejiang, China.

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http://dx.doi.org/10.1186/s12870-019-2211-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6969971PMC
January 2020

Skin transcriptome profiles associated with black- and white-coated regions in Boer and Macheng black crossbred goats.

Genomics 2020 03 31;112(2):1853-1860. Epub 2019 Oct 31.

Hubei Key Laboratory of Animal Embryo Engineering and Molecular Breeding, Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences, Wuhan, Hubei 430064, China. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2019.10.019DOI Listing
March 2020

Functional analysis of GhCHS, GhANR and GhLAR in colored fiber formation of Gossypium hirsutum L.

BMC Plant Biol 2019 Oct 29;19(1):455. Epub 2019 Oct 29.

Plant Genomics & Molecular Improvement of Colored Fiber Lab, Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, 310016, Zhejiang, China.

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http://dx.doi.org/10.1186/s12870-019-2065-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6819470PMC
October 2019

Orbital Rosai-Dorfman disease: a case report and literature review.

Authors:
Xin Su Liqing Zhang

J Int Med Res 2019 Nov 15;47(11):5891-5895. Epub 2019 Oct 15.

Department of Radiology, Affiliated Hangzhou First People's Hospital, Zhejiang University School of Medicine, Hangzhou, China.

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http://dx.doi.org/10.1177/0300060519878086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6862901PMC
November 2019

Four targeted genes for predicting the prognosis of colorectal cancer: A bioinformatics analysis case.

Oncol Lett 2019 Nov 13;18(5):5043-5054. Epub 2019 Sep 13.

Department of Computer Science, Virginia Tech, Blacksburg, VA 24060, USA.

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http://dx.doi.org/10.3892/ol.2019.10866DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781647PMC
November 2019

Enhanced GII.4 human norovirus infection in gnotobiotic pigs transplanted with a human gut microbiota.

J Gen Virol 2019 11;100(11):1530-1540

Department of Biomedical Sciences and Pathobiology, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1099/jgv.0.001336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7137776PMC
November 2019

Identification of Potential Biomarkers and Survival Analysis for Head and Neck Squamous Cell Carcinoma Using Bioinformatics Strategy: A Study Based on TCGA and GEO Datasets.

Biomed Res Int 2019 7;2019:7376034. Epub 2019 Aug 7.

Department of Otorhinolaryngology, The First Affiliated Hospital of Nanjing Medical University, Nanjing 210029, Jiangsu, China.

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http://dx.doi.org/10.1155/2019/7376034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6702813PMC
February 2020

Uncovering missed indels by leveraging unmapped reads.

Sci Rep 2019 07 31;9(1):11093. Epub 2019 Jul 31.

Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA.

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http://dx.doi.org/10.1038/s41598-019-47405-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6668410PMC
July 2019

Effect of antibiotic use and composting on antibiotic resistance gene abundance and resistome risks of soils receiving manure-derived amendments.

Environ Int 2019 07 3;128:233-243. Epub 2019 May 3.

Department of Civil & Environmental Engineering, Virginia Tech, Blacksburg, VA 24061, United States.

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http://dx.doi.org/10.1016/j.envint.2019.04.043DOI Listing
July 2019

vi-HMM: a novel HMM-based method for sequence variant identification in short-read data.

Hum Genomics 2019 02 13;13(1). Epub 2019 Feb 13.

Department of Statistics, Virginia Tech, 250 Drillfield Drive, Blacksburg, 24061, VA, USA.

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http://dx.doi.org/10.1186/s40246-019-0194-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6387560PMC
February 2019

Associations between Urban Green Spaces and Health are Dependent on the Analytical Scale and How Urban Green Spaces are Measured.

Int J Environ Res Public Health 2019 02 16;16(4). Epub 2019 Feb 16.

Department of Architecture, School of Design and Environment, National University of Singapore, Singapore 117566, Singapore.

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http://dx.doi.org/10.3390/ijerph16040578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6406785PMC
February 2019

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum.

mBio 2018 09 18;9(5). Epub 2018 Sep 18.

Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, USA

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http://dx.doi.org/10.1128/mBio.01089-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143742PMC
September 2018

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum.

mBio 2018 09 18;9(5). Epub 2018 Sep 18.

Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, USA

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http://dx.doi.org/10.1128/mBio.01089-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143742PMC
September 2018

Systematic Identification and Analysis of Lysine Succinylation in Strawberry Stigmata.

J Agric Food Chem 2018 Dec 5;66(50):13310-13320. Epub 2018 Dec 5.

Institute of Plant Virology , Ningbo University , Ningbo 315211 , China.

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http://dx.doi.org/10.1021/acs.jafc.8b02708DOI Listing
December 2018

Fast Quenching the Burst of Host Salicylic Acid Is Common in Early Strawberry/Colletotrichum fructicola Interaction.

Phytopathology 2019 Apr 1;109(4):531-541. Epub 2019 Mar 1.

1 Shanghai Key Laboratory of Protected Horticultural Technology, Forestry and Fruit Tree Research Institute, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China.

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http://dx.doi.org/10.1094/PHYTO-02-18-0043-RDOI Listing
April 2019

Analysis of Temporal Changes in Growth and Gene Expression for Commensal Gut Microbes in Response to the Polyphenol Naringenin.

Microbiol Insights 2018 30;11:1178636118775100. Epub 2018 May 30.

Department of Microbiology and Immunology, Temple University School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1177/1178636118775100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044793PMC
May 2018

Novel Fungal Pathogenicity and Leaf Defense Strategies Are Revealed by Simultaneous Transcriptome Analysis of and Strawberry Infected by This Fungus.

Front Plant Sci 2018 25;9:434. Epub 2018 Apr 25.

Shanghai Key Laboratory of Protected Horticultural Technology, Forestry and Fruit Tree Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, China.

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http://dx.doi.org/10.3389/fpls.2018.00434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996897PMC
April 2018

MetaCompare: a computational pipeline for prioritizing environmental resistome risk.

FEMS Microbiol Ecol 2018 07;94(7)

Department of Computer Science, Virginia Tech, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1093/femsec/fiy079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995210PMC
July 2018

Improving somatic variant identification through integration of genome and exome data.

BMC Genomics 2017 10 16;18(Suppl 7):748. Epub 2017 Oct 16.

Department of Computer Science, Virginia Tech, Blacksburg, VA, USA.

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http://dx.doi.org/10.1186/s12864-017-4134-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657037PMC
October 2017

FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data.

PeerJ 2018 12;6:e4227. Epub 2018 Jan 12.

Department of Computer Science, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America.

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http://dx.doi.org/10.7717/peerj.4227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768174PMC
January 2018

miR-202 Inhibits Cell Proliferation, Migration, and Invasion by Targeting Epidermal Growth Factor Receptor in Human Bladder Cancer.

Oncol Res 2018 Jul 3;26(6):949-957. Epub 2018 Jan 3.

Department of Gynecology, General Hospital of Jinan Military Command, Jinan, Shandong, P.R. China.

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http://dx.doi.org/10.3727/096504018X15149787144385DOI Listing
July 2018

-Cinnamaldehyde Inhibits Microglial Activation and Improves Neuronal Survival against Neuroinflammation in BV2 Microglial Cells with Lipopolysaccharide Stimulation.

Evid Based Complement Alternat Med 2017 22;2017:4730878. Epub 2017 Oct 22.

South China Research Center for Acupuncture and Moxibustion, Medical College of Acu-Moxi and Rehabilitation, Guangzhou University of Chinese Medicine, 232 Waihuan Dong Road, Guangzhou 510006, China.

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http://dx.doi.org/10.1155/2017/4730878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5671715PMC
October 2017

UPS-indel: a Universal Positioning System for Indels.

Sci Rep 2017 10 26;7(1):14106. Epub 2017 Oct 26.

Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA.

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http://www.nature.com/articles/s41598-017-14400-1
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http://dx.doi.org/10.1038/s41598-017-14400-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658412PMC
October 2017

Herbicide injury induces DNA methylome alterations in .

PeerJ 2017 20;5:e3560. Epub 2017 Jul 20.

Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA, USA.

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http://dx.doi.org/10.7717/peerj.3560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5522609PMC
July 2017

Differential transcript profiling alters regulatory gene expression during the development of Gossypium arboreum, G.stocksii and somatic hybrids.

Sci Rep 2017 06 9;7(1):3120. Epub 2017 Jun 9.

Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou, 310016, Zhejiang Province, China.

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http://dx.doi.org/10.1038/s41598-017-03431-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5466607PMC
June 2017

Shortened preoperative fasting for prevention of complications associated with laparoscopic cholecystectomy: a meta-analysis.

J Int Med Res 2017 Feb 12;45(1):22-37. Epub 2017 Jan 12.

1 The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.

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http://dx.doi.org/10.1177/0300060516676411DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5536598PMC
February 2017

The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii.

Anaerobe 2016 Dec 11;42:130-141. Epub 2016 Oct 11.

Department of Microbiology and Immunology, Temple University School of Medicine, 3400 North Broad Street, Philadelphia, USA.

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http://dx.doi.org/10.1016/j.anaerobe.2016.10.004DOI Listing
December 2016

MetaStorm: A Public Resource for Customizable Metagenomics Annotation.

PLoS One 2016 15;11(9):e0162442. Epub 2016 Sep 15.

Department of Computer Science, Virginia Tech, Blacksburg, Virginia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162442PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5025195PMC
August 2017

SPAI: an interactive platform for indel analysis.

BMC Genomics 2016 08 31;17 Suppl 5:496. Epub 2016 Aug 31.

Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864
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http://dx.doi.org/10.1186/s12864-016-2824-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009558PMC
August 2016

Trans-cinnamaldehyde improves memory impairment by blocking microglial activation through the destabilization of iNOS mRNA in mice challenged with lipopolysaccharide.

Neuropharmacology 2016 11 16;110(Pt A):503-518. Epub 2016 Aug 16.

Department of Physiology, School of Basic Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00283908163034
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http://dx.doi.org/10.1016/j.neuropharm.2016.08.013DOI Listing
November 2016

VEGFR-1 targeted DNAzyme via transcatheter arterial delivery influences tumor vasculature assessed through dynamic contrast-enhanced magnetic resonance imaging.

Oncol Rep 2016 Sep 12;36(3):1339-44. Epub 2016 Jul 12.

Department of Radiology, Xiangya Hospital, Central South University, Changsha, Hunan 410008, P.R. China.

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http://dx.doi.org/10.3892/or.2016.4933DOI Listing
September 2016

A Facile Process for the Preparation of Three-Dimensional Hollow Zn(OH)2 Nanoflowers at Room Temperature.

Chemistry 2016 Aug 4;22(32):11143-7. Epub 2016 Jul 4.

Center for Research at the Bio/Nano Interface, Department of Chemistry and Department of Physiology and Functional Genomics, Shands Cancer Center, UF Genetics Institute and McKnight Brain Institute, University of Florida, Gainesville, Florida, 32611-7200, USA.

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http://dx.doi.org/10.1002/chem.201600906DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512704PMC
August 2016

[Diagnostic value of liver imaging reporting and data system MRI on primary hepatocellular carcinoma].

Zhong Nan Da Xue Xue Bao Yi Xue Ban 2016 Apr;41(4):380-7

Department of Radiology, Xiangya Hospital, Central South University, Changsha 410008, China.

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http://dx.doi.org/10.11817/j.issn.1672-7347.2016.04.007DOI Listing
April 2016

A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads.

PLoS One 2016 24;11(3):e0151826. Epub 2016 Mar 24.

Department of Computer Science, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, Virginia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151826PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4806927PMC
August 2016

Transcriptomic study of high‑glucose effects on human skin fibroblast cells.

Mol Med Rep 2016 Mar 28;13(3):2627-34. Epub 2016 Jan 28.

Department of Dermatology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang 325000, P.R. China.

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http://dx.doi.org/10.3892/mmr.2016.4822DOI Listing
March 2016

Tumor abnormal protein (TAP) examination contributes to primary diagnosis of bladder cancer.

Int J Clin Exp Med 2015 15;8(10):18528-32. Epub 2015 Oct 15.

Department of Pharmacy, General Hospital of Jinan Military Command Jinan, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4694364PMC
January 2016

HMMvar-func: a new method for predicting the functional outcome of genetic variants.

BMC Bioinformatics 2015 Oct 30;16:351. Epub 2015 Oct 30.

Department of Computer Science, Virginia Polytechnic Institute & State University, Blacksburg, USA.

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http://dx.doi.org/10.1186/s12859-015-0781-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4628267PMC
October 2015

Involvement of miR528 in the Regulation of Arsenite Tolerance in Rice (Oryza sativa L.).

J Agric Food Chem 2015 Oct 2;63(40):8849-61. Epub 2015 Oct 2.

Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences , Hangzhou 310021, People's Republic of China.

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http://dx.doi.org/10.1021/acs.jafc.5b04191DOI Listing
October 2015

Identification and analysis of the N(6)-methyladenosine in the Saccharomyces cerevisiae transcriptome.

Sci Rep 2015 Sep 7;5:13859. Epub 2015 Sep 7.

Department of Computer Science, Virginia Tech, Blacksburg, VA 24060, United States of America.

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http://dx.doi.org/10.1038/srep13859DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4561376PMC
September 2015

A Boosting-Based Spatial-Spectral Model for Stroke Patients' EEG Analysis in Rehabilitation Training.

IEEE Trans Neural Syst Rehabil Eng 2016 Jan 20;24(1):169-79. Epub 2015 Aug 20.

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http://dx.doi.org/10.1109/TNSRE.2015.2466079DOI Listing
January 2016

Performance evaluation of indel calling tools using real short-read data.

Hum Genomics 2015 Aug 19;9:20. Epub 2015 Aug 19.

Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA.

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http://www.humgenomics.com/content/9/1/20
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http://dx.doi.org/10.1186/s40246-015-0042-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545535PMC
August 2015

Predicting the combined effect of multiple genetic variants.

Hum Genomics 2015 Jul 30;9:18. Epub 2015 Jul 30.

Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.

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http://dx.doi.org/10.1186/s40246-015-0040-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520001PMC
July 2015

Clear cell renal cell carcinoma located in sinus renalis confused with renal pelvis mass in image.

Asian J Urol 2015 Jul 18;2(3):185-186. Epub 2015 Jun 18.

Department of Urology, Beijing Hospital of the Ministry of Health, Beijing, China.

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https://linkinghub.elsevier.com/retrieve/pii/S22143882150007
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http://dx.doi.org/10.1016/j.ajur.2015.06.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5730704PMC
July 2015

Bayesian Robust Tensor Factorization for Incomplete Multiway Data.

IEEE Trans Neural Netw Learn Syst 2016 Apr 9;27(4):736-48. Epub 2015 Jun 9.

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http://dx.doi.org/10.1109/TNNLS.2015.2423694DOI Listing
April 2016

Uncorrelated multiway discriminant analysis for motor imagery EEG classification.

Int J Neural Syst 2015 Jun 26;25(4):1550013. Epub 2015 Feb 26.

Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.

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http://dx.doi.org/10.1142/S0129065715500136DOI Listing
June 2015

The pattern of DNA cleavage intensity around indels.

Sci Rep 2015 Feb 9;5:8333. Epub 2015 Feb 9.

Department of Computer Science, Virginia Tech, Blacksburg VA 24060.

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http://dx.doi.org/10.1038/srep08333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321175PMC
February 2015

Vindel: a simple pipeline for checking indel redundancy.

BMC Bioinformatics 2014 Nov 19;15:359. Epub 2014 Nov 19.

Department of Computer Science, Virginia Tech, Blacksburg, VA, 24061, USA.

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http://dx.doi.org/10.1186/s12859-014-0359-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245841PMC
November 2014

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions.

Bioinformatics 2015 Jan 16;31(1):119-20. Epub 2014 Sep 16.

Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063009, China, Department of Computer Science, Virginia Tech, Blacksburg, VA 24060, School of Life Science and Technology, Bioinformatics and Computer-Aided Drug Discovery, Gordon Life Science Institute, Boston, MA 02478, Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA 22904, Department of Computer Science, Vassar College, Poughkeepsie, NY 12604, USA, Excellence in Genomic Medicine Research, Key Laboratory for Neuro-Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China and Excellence in Genomic Medicine Research, Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063009, China, Department of Computer Science, Virginia Tech, Blacksburg, VA 24060, School of Life Science and Technology, Bioinformatics and Computer-Aided Drug Discovery, Gordon Life Science Institute, Boston, MA 02478, Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA 22904, Department of Computer Science, Vassar College, Poughkeepsie, NY 12604, USA, Excellence in Genomic Medicine Research, Key Laboratory for Neuro-Information of Ministry of Education, Center of Bioinformatics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China and Excellence in Genomic Medicine Research, Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia Department of Physics, School of Sciences, Center for Genomics and Computational Biology, Hebei United University, Tangshan 063009, Chin

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January 2015

TssB is essential for virulence and required for type VI secretion system in Ralstonia solanacearum.

Microb Pathog 2014 Sep 24;74:1-7. Epub 2014 Jun 24.

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.micpath.2014.06.006DOI Listing
September 2014

Objective and comprehensive evaluation of bisulfite short read mapping tools.

Adv Bioinformatics 2014 15;2014:472045. Epub 2014 Apr 15.

Department of Computer Science, Virginia Tech, Blacksburg, VA 24061, USA.

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May 2014

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII.

Protein Cell 2014 May 15;5(5):357-68. Epub 2014 Apr 15.

State Key Laboratory of Biomembrane and Membrane Biotechnology, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996161PMC
May 2014

Germline transmission of an embryonic stem cell line derived from BALB/c cataract mice.

PLoS One 2014 4;9(3):e90707. Epub 2014 Mar 4.

Eastern Hepatobiliary Surgical Hospital, The Second Military Medical University, Shanghai, China; Xinyuan Institute of Medicine and Biotechnology, College of Life Science, Zhejiang Sci-Tech University, Hangzhou, Zhejiang, China.

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November 2014

Two rice authentic histidine phosphotransfer proteins, OsAHP1 and OsAHP2, mediate cytokinin signaling and stress responses in rice.

Plant Physiol 2014 May 27;165(1):335-45. Epub 2014 Feb 27.

Hebei Key Laboratory of Molecular and Cellular Biology , Hebei Normal University, Shijiazhuang 050024, China.

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May 2014

Expression of recombinant human alpha-lactalbumin in the milk of transgenic goats using a hybrid pomoter/enhancer.

J Anal Methods Chem 2014 9;2014:281031. Epub 2014 Jan 9.

College of Veterinary Medicine and Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, Jiangsu 225009, China.

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February 2014

Quantitative prediction of the effect of genetic variation using hidden Markov models.

BMC Bioinformatics 2014 Jan 9;15. Epub 2014 Jan 9.

Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893606PMC
January 2014

TransPS: A Transcriptome Post Scaffolding Method for Assembling High Quality Contigs.

Comput Biol J 2014 28;2014. Epub 2014 May 28.

Department of Computer Science, Virginia Tech, Blacksburg, VA.

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May 2014

Preliminary studies of a novel cyclopentadienyl tricarbonyl technetium-99m fatty acid derivative for myocardical imaging.

J Labelled Comp Radiopharm 2013 Jan 7;56(1):1-5. Epub 2012 Dec 7.

Department of Nuclear Medicine, Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, China, 310009; Key Laboratory of Radiopharmaceuticals of Ministry of Education, College of Chemistry, Beijing Normal University, Beijing, China, 100875.

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January 2013

A tensor-based scheme for stroke patients' motor imagery EEG analysis in BCI-FES rehabilitation training.

J Neurosci Methods 2014 Jan 23;222:238-49. Epub 2013 Nov 23.

MOE-Microsoft Key Laboratory for Intelligent Computing and Intelligent Systems, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China. Electronic address:

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January 2014

An EEG diagnosis system for quasi brain death based on complexity and energy analyses.

Annu Int Conf IEEE Eng Med Biol Soc 2013 ;2013:7132-5

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September 2015

Gaussian mixture modeling in stroke patients' rehabilitation EEG data analysis.

Annu Int Conf IEEE Eng Med Biol Soc 2013 ;2013:2208-11

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August 2015

A competitive brain computer interface: multi-person car racing system.

Annu Int Conf IEEE Eng Med Biol Soc 2013 ;2013:2200-3

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August 2015

Neurophysiological substrates of stroke patients with motor imagery-based Brain-Computer Interface training.

Int J Neurosci 2014 Jun 31;124(6):403-15. Epub 2013 Oct 31.

1Department of Rehabilitation, Huashan Hospital, Fudan University, Shanghai, China.

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June 2014

Cobalt chains composed of hexagonal intercrossed microplatelets: shape-controlled synthesis, growth mechanism, and magnetic properties.

J Colloid Interface Sci 2013 Nov 27;410:116-23. Epub 2013 Aug 27.

Institute of Chemistry for Functionalized Materials, Liaoning Normal University, Dalian, Liaoning 116029, PR China. Electronic address:

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November 2013

Higher order partial least squares (HOPLS): a generalized multilinear regression method.

IEEE Trans Pattern Anal Mach Intell 2013 Jul;35(7):1660-73

Brain Science Institute, RIKEN, Saitama, Japan.

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July 2013

Design of assistive wheelchair system directly steered by human thoughts.

Int J Neural Syst 2013 Jun 23;23(3):1350013. Epub 2013 Apr 23.

MOE-Microsoft Key Laboratory for Intelligent Computing and Intelligent Systems, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China.

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June 2013

Combining ERPs and EEG spectral features for decoding intended movement direction.

Annu Int Conf IEEE Eng Med Biol Soc 2012 ;2012:1769-72

Shanghai Jiao Tong University, Shanghai, 200240 China.

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July 2013

Establishment of mouse teratocarcinomas stem cells line and screening genes responsible for malignancy.

PLoS One 2012 31;7(8):e43955. Epub 2012 Aug 31.

Laboratory of Viral and Gene Therapy, Eastern Hepatobiliary Surgical Hospital, The Second Military Medical University, Shanghai, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432059PMC
February 2013

Cloning and functional analysis of a novel chitinase gene Trchi1 from Trichothecium roseum.

Biotechnol Lett 2012 Oct 4;34(10):1921-8. Epub 2012 Jul 4.

Institute of Plant Protection, Shandong Agricultural University, Taian 271018, China.

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October 2012

Active training paradigm for motor imagery BCI.

Exp Brain Res 2012 Jun 5;219(2):245-54. Epub 2012 Apr 5.

MOE-Microsoft Key Laboratory for Intelligent Computing and Intelligent Systems, Department of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.

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June 2012

Prediction of disease and phenotype associations from genome-wide association studies.

PLoS One 2011 4;6(11):e27175. Epub 2011 Nov 4.

Genetics, Bioinformatics, and Computational Biology Program, Virginia Tech, Blacksburg, Virginia, United States of America.

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March 2012

A network of SCOP hidden Markov models and its analysis.

BMC Bioinformatics 2011 May 23;12:191. Epub 2011 May 23.

Department of Computer Science, Virginia Tech, Blacksburg, VA 24061, USA.

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May 2011

The N-terminal domain of NPC1L1 protein binds cholesterol and plays essential roles in cholesterol uptake.

J Biol Chem 2011 Jul 20;286(28):25088-97. Epub 2011 May 20.

State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue-Yang Road, Shanghai 200031, China.

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July 2011