Array ( [2008] => 1 [2010] => 1 [2011] => 1 [2015] => 4 [2016] => 1 [2017] => 1 [2018] => 1 [2020] => 2 ) Lingqi Luo | PubFacts

Publications by authors named "Lingqi Luo"

12Publications

Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-Associated Protein 1 (KEAP1) and Nuclear Factor Erythroid 2 Like 2 (Nrf2).

Authors:
Mengqi Zhong Andrew Lynch Samantha N Muellers Stefan Jehle Lingqi Luo David R Hall Reina Iwase James P Carolan Megan Egbert Amanda Wakefield Kristina Streu Christine M Harvey Paula C Ortet Dima Kozakov Sandor Vajda Karen N Allen Adrian Whitty

Biochemistry 2020 02 2;59(4):563-581. Epub 2020 Jan 2.

Biomolecular Engineering Research Center , Boston University , Boston , Massachusetts 02215 , United States.

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February 2020

The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes.

Authors:
John D Hogan Jessica L Keenan Lingqi Luo Jonas Ibn-Salem Arjun Lamba Daphne Schatzberg Michael L Piacentino Daniel T Zuch Amanda B Core Carolyn Blumberg Bernd Timmermann José Horacio Grau Emily Speranza Miguel A Andrade-Navarro Naoki Irie Albert J Poustka Cynthia A Bradham

Dev Biol 2020 04 6;460(2):139-154. Epub 2019 Dec 6.

Program in Bioinformatics, Boston University, Boston, MA, USA; Biology Department, Boston University, Boston, MA, USA; Program in Molecular and Cellular Biology and Biochemistry, Boston University, Boston, MA, USA. Electronic address:

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April 2020

Exploring the structural origins of cryptic sites on proteins.

Authors:
Dmitri Beglov David R Hall Amanda E Wakefield Lingqi Luo Karen N Allen Dima Kozakov Adrian Whitty Sandor Vajda

Proc Natl Acad Sci U S A 2018 04 26;115(15):E3416-E3425. Epub 2018 Mar 26.

Department of Biomedical Engineering, Boston University, Boston, MA 02215;

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April 2018

A benchmark testing ground for integrating homology modeling and protein docking.

Authors:
Tanggis Bohnuud Lingqi Luo Shoshana J Wodak Alexandre M J J Bonvin Zhiping Weng Sandor Vajda Ora Schueler-Furman Dima Kozakov

Proteins 2017 01 13;85(1):10-16. Epub 2016 Nov 13.

Department of Biomedical Engineering, Boston University, Boston, Massachusetts, 02215.

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January 2017

RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins.

Authors:
Michael L Piacentino Daniel T Zuch Julie Fishman Sviatlana Rose Emily E Speranza Christy Li Jia Yu Oliver Chung Janani Ramachandran Patrick Ferrell Vijeta Patel Arlene Reyna Hajerah Hameeduddin James Chaves Finnegan B Hewitt Evan Bardot David Lee Amanda B Core John D Hogan Jessica L Keenan Lingqi Luo Jasmin Coulombe-Huntington Todd A Blute Ekaterina Oleinik Jonas Ibn-Salem Albert J Poustka Cynthia A Bradham

Development 2016 Feb 11;143(4):703-14. Epub 2016 Jan 11.

Department of Biology, Boston University, Boston, MA 02215, USA Program in Molecular Biology, Cell Biology and Biochemistry, Boston University, Boston, MA 02215, USA Program in Bioinformatics, Boston University, Boston, MA 02215, USA

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February 2016

Conservation and Covariance in Small Bacterial Phosphoglycosyltransferases Identify the Functional Catalytic Core.

Authors:
Vinita Lukose Lingqi Luo Dima Kozakov Sandor Vajda Karen N Allen Barbara Imperiali

Biochemistry 2015 Dec 4;54(50):7326-34. Epub 2015 Dec 4.

Departments of Chemistry and Biology, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.

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December 2015

Ligand deconstruction: Why some fragment binding positions are conserved and others are not.

Authors:
Dima Kozakov David R Hall Stefan Jehle Sefan Jehle Lingqi Luo Stefan O Ochiana Elizabeth V Jones Michael Pollastri Karen N Allen Adrian Whitty Sandor Vajda

Proc Natl Acad Sci U S A 2015 May 27;112(20):E2585-94. Epub 2015 Apr 27.

Department of Biomedical Engineering, Boston University, Boston, MA 02215; Department of Chemistry, Boston University, Boston, MA 02215

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May 2015

The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.

Authors:
Dima Kozakov Laurie E Grove David R Hall Tanggis Bohnuud Scott E Mottarella Lingqi Luo Bing Xia Dmitri Beglov Sandor Vajda

Nat Protoc 2015 May 9;10(5):733-55. Epub 2015 Apr 9.

Department of Biomedical Engineering, Boston University, Boston, Massachusetts, USA.

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May 2015

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data.

Authors:
Joshua D Campbell Gang Liu Lingqi Luo Ji Xiao Joseph Gerrein Brenda Juan-Guardela John Tedrow Yuriy O Alekseyev Ivana V Yang Mick Correll Mark Geraci John Quackenbush Frank Sciurba David A Schwartz Naftali Kaminski W Evan Johnson Stefano Monti Avrum Spira Jennifer Beane Marc E Lenburg

RNA 2015 Feb 17;21(2):164-71. Epub 2014 Dec 17.

Bioinformatics Graduate Program, Boston University, Boston, Massachusetts 02215, USA Section of Computational Biomedicine, Boston University Medical Center, Boston, Massachusetts 02118, USA Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, Massachusetts 02118, USA

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February 2015

Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq.

Authors:
Jennifer Beane Jessica Vick Frank Schembri Christina Anderlind Adam Gower Joshua Campbell Lingqi Luo Xiao Hui Zhang Ji Xiao Yuriy O Alekseyev Shenglong Wang Shawn Levy Pierre P Massion Marc Lenburg Avrum Spira

Cancer Prev Res (Phila) 2011 Jun;4(6):803-17

The Pulmonary Center, Department of Medicine, Boston University Medical Center, Boston University, Massachusetts, USA.

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June 2011

Distinct effects of knocking down MEK1 and MEK2 on replication of herpes simplex virus type 2.

Authors:
Hao Zhang Hai Feng Lingqi Luo Qi Zhou Zhijun Luo Yihong Peng

Virus Res 2010 Jun 19;150(1-2):22-7. Epub 2010 Feb 19.

Department of Microbiology, Peking University Health Science Center, 38 Xueyuan Road, Beijing 100191, PR China.

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June 2010

Characterization of Ser338 phosphorylation for Raf-1 activation.

Authors:
Mengwei Zang Jun Gong Lingqi Luo Jing Zhou Xiaoqin Xiang Wei Huang Qiren Huang Xixi Luo Martin Olbrot Yihong Peng Changyan Chen Zhijun Luo

J Biol Chem 2008 Nov 5;283(46):31429-37. Epub 2008 Sep 5.

Department of Medicine, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

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November 2008